Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003558

Physical Location & Seq

Genomic Coordinates Reverse (-)

10700914 .. 10704513

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1118000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTACGGTCACAACAGCACCGCATTCCCATGCGCCCCCGATTTTCAGTATCATCAGGGCTCGCATGAGGCTCTTCCACTGCAGTACCATCACGACCACCTTGTCTCCGCCGAGTTCAGCAGCAGCTGTAGCAGCGGCTGCAGCAGCCACGGAGCCTCGCCGATCAGCAACAGGGCTCACGAGTGCTACGGAAACCCGGCCCCAAACCTGATTCAGCGCAGCGTCAGCAGCCATTCACTGCAGAAGACTCGCGGGACCCACAAGCTGGTCTCCGACTTGCTGGAGTCAGAGACCGTCCCGGTCCGCCGGGTGTATAGCACTGGGGATTTGGATTTGCAGACGATCAATAGCATGCATAGTAACGGGGTGCAAGTGGTACAGCACTTGCAATATGGTGGTTATAACAGATCATCAGAAAGTAGTCCGCTGTCGAGTGAGAGCAGTATGATAATAGAAGGGATGAGCAAAGCTTGCCCGTACAGTCCCGAGGAGAAGAAAGAGAGAATTGAGAGGTACAGAAGCAAGCGCAACCAAAGAAACTTCAACAAGACCATAAAGTATGCTTGTAGGAAGACATTGGCGGACAGCCGGCCGCGCATCAGAGGCCGGTTTGCTAGGAACGACGAAATTGAGAAGAATTCAAATGTTCAATGGAGCAACATGAGTGGGGAAGAAGATGAGGAGGAGGACGATAGTTGGATCAACCTTCTTGATGCATTTTCTTCAATCGAATCTAATTCCATAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

250

Amino Acids

28.05

Weight (kDa)

6.31

Isoelectric Point (pI)

76.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	166 - 207	5.9e-19	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59990 AT5G59990
fragaria_vesca	FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540
malus_domestica	MD03G1105500.v1.1 MD11G1118000.v1.1
prunus_persica	Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1
pyrus_communis	pycom03g08470 pycom11g09890
rosa_chinensis	RchiOBHm_Chr5g0062181
rosa_laevigata	RLG00000035540
rosa_multiflora	Rmu_ssc0000409.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018530
rosa_rugosa	Rorug05G0346600 Rorug05G0346700 Rorug05G0346800 Rorug05G0346900 Rorug05G0347000 Rorug05G0347100 Rorug05G0347200 Rorug05G0347200
rosa_samantha	Rh5AG407600 Rh5BG421300 Rh5CG445300 Rh5DG436300
rosa_wichuraiana	Rw5G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AasI	GACNNNNNNGTC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccII	CGCG	2 cut(s)	252, 595
AciI	CCGC	8 cut(s)	21, 108, 135, 252, 304, 425, 581, 593
AclWI	GGATC	1 cut(s)	707
AcoI	YGGCCR	1 cut(s)	590
AcsI	RAATTY	1 cut(s)	637
AfaI	GTAC	5 cut(s)	5, 86, 378, 479, 515
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	4 cut(s)	544, 642, 650, 726
AluBI	AGCT	3 cut(s)	126, 265, 470
AluI	AGCT	3 cut(s)	126, 265, 470
Alw26I	GTCTC	3 cut(s)	109, 274, 284
AlwI	GGATC	1 cut(s)	707
AlwNI	CAGNNNCTG	2 cut(s)	126, 138
Ama87I	CYCGRG	1 cut(s)	485
AoxI	GGCC	3 cut(s)	198, 590, 604
ApeKI	GCWGC	8 cut(s)	120, 123, 132, 138, 141, 144, 219, 228
ApoI	RAATTY	1 cut(s)	637
AspLEI	GCGC	4 cut(s)	35, 219, 528, 597
AspS9I	GGNCC	3 cut(s)	199, 255, 301
AsuC2I	CCSGG	3 cut(s)	197, 299, 308
AvaI	CYCGRG	1 cut(s)	485
AvaII	GGWCC	2 cut(s)	255, 301
BaeI	ACNNNNGTAYC	2 cut(s)	68, 101
BanII	GRGCYC	2 cut(s)	62, 178
BauI	CACGAG	1 cut(s)	179
BbsI	GAAGAC	2 cut(s)	251, 578
BbvI	GCAGC	8 cut(s)	125, 132, 135, 144, 153, 156, 231, 240
BccI	CCATC	1 cut(s)	96
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BcnI	CCSGG	3 cut(s)	197, 299, 308
BcoDI	GTCTC	3 cut(s)	109, 274, 284
BfaI	CTAG	2 cut(s)	615, 748
BfmI	CTRYAG	4 cut(s)	80, 127, 139, 239
Bme1390I	CCNGG	3 cut(s)	197, 299, 308
Bme18I	GGWCC	2 cut(s)	255, 301
BmeT110I	CYCGRG	1 cut(s)	485
BmgT120I	GGNCC	3 cut(s)	199, 255, 301
BmiI	GGNNCC	4 cut(s)	154, 201, 256, 257
BmrFI	CCNGG	3 cut(s)	197, 299, 308
BmrI	ACTGGG	1 cut(s)	330
BmsI	GCATC	2 cut(s)	606, 703
BmuI	ACTGGG	1 cut(s)	330
BpiI	GAAGAC	2 cut(s)	251, 578
BpmI	CTGGAG	1 cut(s)	302
BpuMI	CCSGG	3 cut(s)	197, 299, 308
BsaI	GGTCTC	2 cut(s)	274, 284
BsaJI	CCNNGG	2 cut(s)	148, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse118I	RCCGGY	2 cut(s)	588, 606
Bse1I	ACTGG	1 cut(s)	325
BseDI	CCNNGG	2 cut(s)	148, 486
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseNI	ACTGG	1 cut(s)	325
BseRI	GAGGAG	3 cut(s)	503, 695, 698
BseX3I	CGGCCG	1 cut(s)	590
BseXI	GCAGC	8 cut(s)	125, 132, 135, 144, 153, 156, 231, 240
Bsh1236I	CGCG	2 cut(s)	252, 595
Bsh1285I	CGRYCG	1 cut(s)	593
BshFI	GGCC	3 cut(s)	200, 592, 606
BsiEI	CGRYCG	1 cut(s)	593
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	5 cut(s)	197, 299, 307, 589, 607
BslFI	GGGAC	3 cut(s)	268, 281, 468
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	3 cut(s)	109, 274, 284
BsmFI	GGGAC	3 cut(s)	268, 281, 468
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	3 cut(s)	200, 592, 606
Bso31I	GGTCTC	2 cut(s)	274, 284
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	2 cut(s)	62, 178
Bsp143I	GATC	4 cut(s)	162, 342, 407, 699
BspACI	CCGC	8 cut(s)	21, 108, 135, 252, 304, 425, 581, 593
BspANI	GGCC	3 cut(s)	200, 592, 606
BspFNI	CGCG	2 cut(s)	252, 595
BspLI	GGNNCC	4 cut(s)	154, 201, 256, 257
BspMAI	CTGCAG	3 cut(s)	84, 143, 243
BspPI	GGATC	1 cut(s)	707
BspQI	GCTCTTC	1 cut(s)	78
BspTNI	GGTCTC	2 cut(s)	274, 284
BsrFI	RCCGGY	2 cut(s)	588, 606
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	2 cut(s)	588, 606
BssECI	CCNNGG	2 cut(s)	148, 486
BssMI	GATC	4 cut(s)	162, 342, 407, 699
BssSI	CACGAG	1 cut(s)	179
Bst2BI	CACGAG	1 cut(s)	179
Bst4CI	ACNGT	3 cut(s)	8, 295, 482
Bst6I	CTCTTC	1 cut(s)	78
BstAPI	GCANNNNNTGC	2 cut(s)	138, 471
BstC8I	GCNNGC	5 cut(s)	62, 353, 472, 524, 590
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	465
BstFNI	CGCG	2 cut(s)	252, 595
BstHHI	GCGC	4 cut(s)	35, 219, 528, 597
BstKTI	GATC	4 cut(s)	165, 345, 410, 702
BstMAI	GTCTC	3 cut(s)	109, 274, 284
BstMBI	GATC	4 cut(s)	162, 342, 407, 699
BstMCI	CGRYCG	1 cut(s)	593
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	3 cut(s)	195, 297, 306
BstSFI	CTRYAG	4 cut(s)	80, 127, 139, 239
BstUI	CGCG	2 cut(s)	252, 595
BstV1I	GCAGC	8 cut(s)	125, 132, 135, 144, 153, 156, 231, 240
BstV2I	GAAGAC	2 cut(s)	251, 578
BstZI	CGGCCG	1 cut(s)	590
BsuRI	GGCC	3 cut(s)	200, 592, 606
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	465
BtsI	GCAGTG	2 cut(s)	77, 236
BtsIMutI	CAGTG	3 cut(s)	77, 236, 318
Cac8I	GCNNGC	5 cut(s)	62, 353, 472, 524, 590
CaiI	CAGNNNCTG	2 cut(s)	126, 138
CfoI	GCGC	4 cut(s)	35, 219, 528, 597
Cfr10I	RCCGGY	2 cut(s)	588, 606
Cfr13I	GGNCC	3 cut(s)	199, 255, 301
CpoI	CGGWCCG	1 cut(s)	301
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	5 cut(s)	4, 85, 377, 478, 514
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CspI	CGGWCCG	1 cut(s)	301
CviAII	CATG	4 cut(s)	30, 65, 352, 661
CviQI	GTAC	5 cut(s)	4, 85, 377, 478, 514
DpnI	GATC	4 cut(s)	164, 344, 409, 701
DpnII	GATC	4 cut(s)	162, 342, 407, 699
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	590
EagI	CGGCCG	1 cut(s)	590
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EciI	GGCGGA	3 cut(s)	97, 293, 596
EclXI	CGGCCG	1 cut(s)	590
Eco24I	GRGCYC	2 cut(s)	62, 178
Eco31I	GGTCTC	2 cut(s)	274, 284
Eco47I	GGWCC	2 cut(s)	255, 301
Eco52I	CGGCCG	1 cut(s)	590
Eco88I	CYCGRG	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	255
EcoRI	GAATTC	1 cut(s)	637
EcoT22I	ATGCAT	2 cut(s)	357, 718
EcoT38I	GRGCYC	2 cut(s)	62, 178
FaeI	CATG	4 cut(s)	33, 68, 355, 664
FaqI	GGGAC	3 cut(s)	268, 281, 468
FatI	CATG	4 cut(s)	29, 64, 351, 660
FauI	CCCGC	1 cut(s)	245
FokI	GGATG	1 cut(s)	472
FriOI	GRGCYC	2 cut(s)	62, 178
FspBI	CTAG	2 cut(s)	615, 748
GlaI	GCGC	4 cut(s)	34, 218, 527, 596
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	3 cut(s)	200, 592, 606
HapII	CCGG	5 cut(s)	197, 299, 307, 589, 607
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	4 cut(s)	35, 219, 528, 597
Hin1II	CATG	4 cut(s)	33, 68, 355, 664
Hin6I	GCGC	4 cut(s)	33, 217, 526, 595
HinP1I	GCGC	4 cut(s)	33, 217, 526, 595
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	4 cut(s)	211, 247, 284, 731
HpaII	CCGG	5 cut(s)	197, 299, 307, 589, 607
Hpy188I	TCNGA	4 cut(s)	274, 289, 415, 602
Hpy188III	TCNNGA	4 cut(s)	92, 179, 485, 710
Hpy99I	CGWCG	1 cut(s)	626
HpyAV	CCTTC	2 cut(s)	449, 716
HpyCH4III	ACNGT	3 cut(s)	8, 295, 482
HpyCH4V	TGCA	8 cut(s)	82, 141, 241, 337, 355, 370, 388, 716
Hsp92II	CATG	4 cut(s)	33, 68, 355, 664
HspAI	GCGC	4 cut(s)	33, 217, 526, 595
KflI	GGGWCCC	1 cut(s)	255
KroI	GCCGGC	1 cut(s)	588
KroNI	GCCGGC	1 cut(s)	590
Kzo9I	GATC	4 cut(s)	162, 342, 407, 699
LguI	GCTCTTC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	152, 654
Lsp1109I	GCAGC	8 cut(s)	125, 132, 135, 144, 153, 156, 231, 240
LweI	GCATC	2 cut(s)	606, 703
MaeI	CTAG	2 cut(s)	615, 748
MaeIII	GTNAC	2 cut(s)	8, 359
MalI	GATC	4 cut(s)	164, 344, 409, 701
MboI	GATC	4 cut(s)	162, 342, 407, 699
MboII	GAAGA	8 cut(s)	65, 256, 505, 583, 646, 683, 686, 714
MhlI	GDGCHC	2 cut(s)	62, 178
MluCI	AATT	4 cut(s)	504, 627, 637, 736
MlyI	GAGTC	2 cut(s)	241, 293
MmeI	TCCRAC	2 cut(s)	297, 677
MnlI	CCTC	8 cut(s)	61, 166, 481, 504, 596, 673, 676, 679
Mph1103I	ATGCAT	2 cut(s)	357, 718
MroNI	GCCGGC	1 cut(s)	588
MslI	CAYNNNNRTG	1 cut(s)	28
MspA1I	CMGCKG	3 cut(s)	126, 135, 427
MspI	CCGG	5 cut(s)	197, 299, 307, 589, 607
MspR9I	CCNGG	3 cut(s)	197, 299, 308
Mva1269I	GAATGC	1 cut(s)	23
MvnI	CGCG	2 cut(s)	252, 595
NaeI	GCCGGC	1 cut(s)	590
NciI	CCSGG	3 cut(s)	197, 299, 308
NdeII	GATC	4 cut(s)	162, 342, 407, 699
NgoMIV	GCCGGC	1 cut(s)	588
NlaIII	CATG	4 cut(s)	33, 68, 355, 664
NlaIV	GGNNCC	4 cut(s)	154, 201, 256, 257
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	8
NsiI	ATGCAT	2 cut(s)	357, 718
NspI	RCATGY	1 cut(s)	355
PaeI	GCATGC	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	78
PctI	GAATGC	1 cut(s)	23
PdiI	GCCGGC	1 cut(s)	590
PfeI	GAWTC	2 cut(s)	211, 731
PflMI	CCANNNNNTGG	1 cut(s)	265
PleI	GAGTC	2 cut(s)	241, 292
PpsI	GAGTC	2 cut(s)	241, 292
PpuMI	RGGWCCY	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	255
PspN4I	GGNNCC	4 cut(s)	154, 201, 256, 257
PspPI	GGNCC	3 cut(s)	199, 255, 301
PspPPI	RGGWCCY	1 cut(s)	255
PstI	CTGCAG	3 cut(s)	84, 143, 243
PstNI	CAGNNNCTG	2 cut(s)	126, 138
PvuII	CAGCTG	1 cut(s)	126
RsaI	GTAC	5 cut(s)	5, 86, 378, 479, 515
RsaNI	GTAC	5 cut(s)	4, 85, 377, 478, 514
RseI	CAYNNNNRTG	1 cut(s)	28
Rsr2I	CGGWCCG	1 cut(s)	301
RsrII	CGGWCCG	1 cut(s)	301
SapI	GCTCTTC	1 cut(s)	78
Sau3AI	GATC	4 cut(s)	162, 342, 407, 699
Sau96I	GGNCC	3 cut(s)	199, 255, 301
SchI	GAGTC	2 cut(s)	241, 293
ScrFI	CCNGG	3 cut(s)	197, 299, 308
SduI	GDGCHC	2 cut(s)	62, 178
SetI	ASST	7 cut(s)	102, 128, 210, 267, 472, 515, 708
SfaNI	GCATC	2 cut(s)	606, 703
SfcI	CTRYAG	4 cut(s)	80, 127, 139, 239
SinI	GGWCC	2 cut(s)	255, 301
SmiMI	CAYNNNNRTG	1 cut(s)	28
SphI	GCATGC	1 cut(s)	355
Sse9I	AATT	4 cut(s)	504, 627, 637, 736
SsiI	CCGC	8 cut(s)	21, 108, 135, 252, 304, 425, 581, 593
SspMI	CTAG	2 cut(s)	615, 748
StyD4I	CCNGG	3 cut(s)	195, 297, 306
TaaI	ACNGT	3 cut(s)	8, 295, 482
TaqI	TCGA	2 cut(s)	431, 729
TasI	AATT	4 cut(s)	504, 627, 637, 736
TauI	GCSGC	2 cut(s)	138, 595
TfiI	GAWTC	2 cut(s)	211, 731
TscAI	CASTG	3 cut(s)	84, 243, 325
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	8 cut(s)	120, 123, 132, 138, 141, 144, 219, 228
Tsp45I	GTSAC	1 cut(s)	8
TspGWI	ACGGA	2 cut(s)	165, 204
TspRI	CASTG	3 cut(s)	84, 243, 325
Van91I	CCANNNNNTGG	1 cut(s)	265
VpaK11BI	GGWCC	2 cut(s)	255, 301
XapI	RAATTY	1 cut(s)	637
XceI	RCATGY	1 cut(s)	355
XspI	CTAG	2 cut(s)	615, 748
Zsp2I	ATGCAT	2 cut(s)	357, 718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.