Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003558

Physical Location & Seq

Genomic Coordinates Forward (+)

70461043 .. 70463977

Gene Structure 2935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG407600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCAGACCCATCCCGTCGTCCCTGTTCTCTATGGCCCCCTGCCCTTTTGCTTTAAGTACCCCCATCCCTCCTCCAGTATATTCACTCCTCTCAAACCTTCCCACAACTCCCAAAAATTCTCGACCGACTTCCCCACACGCGCCATGTACGGTCACAACGGCAACGCATTCCCACGCGCCAACGACTTCGAGGGCCTGCCAATGCCGGCCCTGCCCTTCGGGACATACAACAATGACTACCACCACCTCGGCGCGGCGGCGAATGAGTTCAGCAACAACAGCTGTAGCAGCGGCTGCAGCAGCTACGGTGGCTCGCCCACCTATGCGAGTACCACTACCACTACGACTATTCATGATCATGAGGTTGAGCCGAGCCTGATGATTCAGAGGAGTGTGAGCAGCCACTCGCTCCAGAAGAACGTCGGGACCCACCGGCTCGTCTCGGACTTGCTGGAGCTCGAGACCGGCCCCGTCCGGAGGGTTTATAGCACCGGCGACTTGGATTTGCAGAGGATTAACAATACTAATGGGGTGCAAGTGCAACTAATGGGGTGCAGCTACAGATCGTCATCAGAAAGTAGTCCATTGTCAAGCGAGAGCAGTATGATCATTGAAGGAATGAGCAAAGCCTGTCGTTACAGTCCTGAGGAGAAGAAAGAGAGAATCGAGAGGTACAGAAGCAAGAGAAACCTCAGGAACTTCAACAAAACGATTAAGGTTTGGTTAATTCTGCTACACCTTTCTCATTCTTTTAGTCTCTTCCTCTTTTTACTTTTATCAAGACGTGATATCTTTAGCATTCTTCGGCTAGTTGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

273

Amino Acids

30.67

Weight (kDa)

9.08

Isoelectric Point (pI)

59.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59990 AT5G59990
fragaria_vesca	FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540
malus_domestica	MD03G1105500.v1.1 MD11G1118000.v1.1
prunus_persica	Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1
pyrus_communis	pycom03g08470 pycom11g09890
rosa_chinensis	RchiOBHm_Chr5g0062181
rosa_laevigata	RLG00000035540
rosa_multiflora	Rmu_ssc0000409.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018530
rosa_rugosa	Rorug05G0346600 Rorug05G0346700 Rorug05G0346800 Rorug05G0346900 Rorug05G0347000 Rorug05G0347100 Rorug05G0347200 Rorug05G0347200
rosa_samantha	Rh5AG407600 Rh5BG421300 Rh5CG445300 Rh5DG436300
rosa_wichuraiana	Rw5G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	141, 177, 254
AccIII	TCCGGA	1 cut(s)	474
AciI	CCGC	3 cut(s)	254, 257, 291
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	4 cut(s)	59, 149, 331, 674
AfiI	CCNNNNNNNGG	2 cut(s)	253, 477
AgsI	TTSAA	2 cut(s)	614, 703
AjiI	CACGTC	1 cut(s)	785
AluBI	AGCT	4 cut(s)	282, 303, 457, 558
AluI	AGCT	4 cut(s)	282, 303, 457, 558
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	3 cut(s)	445, 455, 761
AlwNI	CAGNNNCTG	1 cut(s)	294
Ama87I	CYCGRG	1 cut(s)	458
Aor13HI	TCCGGA	1 cut(s)	474
AoxI	GGCC	4 cut(s)	34, 193, 207, 466
ApeKI	GCWGC	6 cut(s)	288, 294, 297, 300, 399, 555
ApoI	RAATTY	1 cut(s)	116
Asp700I	GAANNNNTTC	1 cut(s)	266
AspLEI	GCGC	3 cut(s)	143, 179, 254
AspS9I	GGNCC	5 cut(s)	35, 193, 208, 426, 467
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	426
AxyI	CCTNAGG	2 cut(s)	645, 692
BanII	GRGCYC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	6 cut(s)	281, 300, 309, 312, 411, 567
BccI	CCATC	2 cut(s)	18, 72
BceAI	ACGGC	1 cut(s)	175
BclI	TGATCA	2 cut(s)	355, 606
BcoDI	GTCTC	3 cut(s)	445, 455, 761
BfaI	CTAG	1 cut(s)	809
BfmI	CTRYAG	3 cut(s)	283, 295, 559
BisI	GCNGC	9 cut(s)	255, 258, 289, 292, 295, 298, 301, 400, 556
BlsI	GCNGC	9 cut(s)	256, 259, 290, 293, 296, 299, 302, 401, 557
Bme18I	GGWCC	1 cut(s)	426
BmeT110I	CYCGRG	1 cut(s)	458
BmgBI	CACGTC	1 cut(s)	785
BmgT120I	GGNCC	5 cut(s)	35, 193, 208, 426, 467
BmiI	GGNNCC	4 cut(s)	37, 427, 428, 469
BpmI	CTGGAG	3 cut(s)	58, 395, 473
BsaBI	GATNNNNATC	1 cut(s)	568
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	474
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 477
Bse118I	RCCGGY	4 cut(s)	205, 432, 464, 491
Bse1I	ACTGG	1 cut(s)	75
Bse21I	CCTNAGG	2 cut(s)	645, 692
Bse8I	GATNNNNATC	1 cut(s)	568
BseAI	TCCGGA	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	2 cut(s)	10, 64
BseJI	GATNNNNATC	1 cut(s)	568
BseLI	CCNNNNNNNGG	2 cut(s)	253, 477
BseMII	CTCAG	2 cut(s)	636, 706
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	4 cut(s)	61, 78, 403, 662
BseXI	GCAGC	6 cut(s)	281, 300, 309, 312, 411, 567
BsgI	GTGCAG	1 cut(s)	574
Bsh1236I	CGCG	3 cut(s)	141, 177, 254
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	4 cut(s)	36, 195, 209, 468
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	5 cut(s)	206, 433, 465, 475, 492
BslFI	GGGAC	3 cut(s)	5, 235, 439
BslI	CCNNNNNNNGG	2 cut(s)	253, 477
BsmAI	GTCTC	3 cut(s)	445, 455, 761
BsmBI	CGTCTC	1 cut(s)	445
BsmFI	GGGAC	3 cut(s)	5, 235, 439
BsmI	GAATGC	2 cut(s)	167, 798
BsnI	GGCC	4 cut(s)	36, 195, 209, 468
Bso31I	GGTCTC	1 cut(s)	455
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp13I	TCCGGA	1 cut(s)	474
Bsp143I	GATC	3 cut(s)	355, 563, 606
BspACI	CCGC	3 cut(s)	254, 257, 291
BspANI	GGCC	4 cut(s)	36, 195, 209, 468
BspCNI	CTCAG	2 cut(s)	637, 705
BspEI	TCCGGA	1 cut(s)	474
BspFNI	CGCG	3 cut(s)	141, 177, 254
BspHI	TCATGA	2 cut(s)	352, 358
BspLI	GGNNCC	4 cut(s)	37, 427, 428, 469
BspMAI	CTGCAG	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	455
BsrFI	RCCGGY	4 cut(s)	205, 432, 464, 491
BsrI	ACTGG	1 cut(s)	75
BssAI	RCCGGY	4 cut(s)	205, 432, 464, 491
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	3 cut(s)	355, 563, 606
Bst4CI	ACNGT	3 cut(s)	152, 308, 641
Bst6I	CTCTTC	1 cut(s)	764
BstAPI	GCANNNNNTGC	1 cut(s)	294
BstC8I	GCNNGC	3 cut(s)	197, 207, 314
BstDEI	CTNAG	2 cut(s)	645, 692
BstF5I	GGATG	2 cut(s)	10, 64
BstFNI	CGCG	3 cut(s)	141, 177, 254
BstHHI	GCGC	3 cut(s)	143, 179, 254
BstKTI	GATC	3 cut(s)	358, 566, 609
BstMAI	GTCTC	3 cut(s)	445, 455, 761
BstMBI	GATC	3 cut(s)	355, 563, 606
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	7 cut(s)	211, 279, 288, 294, 297, 300, 309
BstSFI	CTRYAG	3 cut(s)	283, 295, 559
BstUI	CGCG	3 cut(s)	141, 177, 254
BstV1I	GCAGC	6 cut(s)	281, 300, 309, 312, 411, 567
Bsu36I	CCTNAGG	2 cut(s)	645, 692
BsuRI	GGCC	4 cut(s)	36, 195, 209, 468
BtrI	CACGTC	1 cut(s)	785
BtsCI	GGATG	2 cut(s)	10, 64
Cac8I	GCNNGC	3 cut(s)	197, 207, 314
CaiI	CAGNNNCTG	1 cut(s)	294
CciI	TCATGA	2 cut(s)	352, 358
CfoI	GCGC	3 cut(s)	143, 179, 254
Cfr10I	RCCGGY	4 cut(s)	205, 432, 464, 491
Cfr13I	GGNCC	5 cut(s)	35, 193, 208, 426, 467
Csp6I	GTAC	4 cut(s)	58, 148, 330, 673
CviAII	CATG	3 cut(s)	145, 353, 359
CviQI	GTAC	4 cut(s)	58, 148, 330, 673
DdeI	CTNAG	2 cut(s)	645, 692
DpnI	GATC	3 cut(s)	357, 565, 608
DpnII	GATC	3 cut(s)	355, 563, 606
Eam1104I	CTCTTC	1 cut(s)	764
EarI	CTCTTC	1 cut(s)	764
Ecl136II	GAGCTC	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	455
Eco32I	GATATC	1 cut(s)	790
Eco47I	GGWCC	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	457
Eco81I	CCTNAGG	2 cut(s)	645, 692
Eco88I	CYCGRG	1 cut(s)	458
EcoICRI	GAGCTC	1 cut(s)	457
EcoO109I	RGGNCCY	2 cut(s)	193, 426
EcoRV	GATATC	1 cut(s)	790
EcoT38I	GRGCYC	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	445
FaeI	CATG	3 cut(s)	148, 356, 362
FaiI	YATR	9 cut(s)	33, 80, 146, 226, 324, 354, 360, 486, 605
FaqI	GGGAC	3 cut(s)	5, 235, 439
FatI	CATG	3 cut(s)	144, 352, 358
FbaI	TGATCA	2 cut(s)	355, 606
Fnu4HI	GCNGC	9 cut(s)	255, 258, 289, 292, 295, 298, 301, 400, 556
FokI	GGATG	1 cut(s)	51
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	9 cut(s)	255, 258, 289, 292, 295, 298, 301, 400, 556
FspBI	CTAG	1 cut(s)	809
GlaI	GCGC	3 cut(s)	142, 178, 253
GluI	GCNGC	9 cut(s)	255, 258, 289, 292, 295, 298, 301, 400, 556
GsuI	CTGGAG	3 cut(s)	58, 395, 473
HaeIII	GGCC	4 cut(s)	36, 195, 209, 468
HapII	CCGG	5 cut(s)	206, 433, 465, 475, 492
HhaI	GCGC	3 cut(s)	143, 179, 254
Hin1II	CATG	3 cut(s)	148, 356, 362
Hin6I	GCGC	3 cut(s)	141, 177, 252
HinP1I	GCGC	3 cut(s)	141, 177, 252
HinfI	GANTC	2 cut(s)	382, 663
HpaII	CCGG	5 cut(s)	206, 433, 465, 475, 492
Hpy188I	TCNGA	3 cut(s)	387, 445, 574
Hpy99I	CGWCG	2 cut(s)	20, 425
HpyAV	CCTTC	3 cut(s)	108, 226, 608
HpyCH4III	ACNGT	3 cut(s)	152, 308, 641
HpyCH4IV	ACGT	2 cut(s)	420, 784
HpyCH4V	TGCA	6 cut(s)	4, 297, 508, 535, 541, 555
HpyF10VI	GCNNNNNNNGC	7 cut(s)	211, 279, 288, 294, 297, 300, 309
HpyF3I	CTNAG	2 cut(s)	645, 692
HpySE526I	ACGT	2 cut(s)	420, 784
Hsp92II	CATG	3 cut(s)	148, 356, 362
HspAI	GCGC	3 cut(s)	141, 177, 252
KflI	GGGWCCC	1 cut(s)	426
Kpn2I	TCCGGA	1 cut(s)	474
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
Ksp22I	TGATCA	2 cut(s)	355, 606
Kzo9I	GATC	3 cut(s)	355, 563, 606
LmnI	GCTCC	2 cut(s)	414, 454
Lsp1109I	GCAGC	6 cut(s)	281, 300, 309, 312, 411, 567
MaeI	CTAG	1 cut(s)	809
MaeII	ACGT	2 cut(s)	420, 784
MaeIII	GTNAC	2 cut(s)	152, 635
MalI	GATC	3 cut(s)	357, 565, 608
MboI	GATC	3 cut(s)	355, 563, 606
MboII	GAAGA	4 cut(s)	427, 664, 751, 794
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	2 cut(s)	116, 726
MroI	TCCGGA	1 cut(s)	474
MroNI	GCCGGC	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	4 cut(s)	54, 516, 714, 725
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	2 cut(s)	282, 291
MspI	CCGG	5 cut(s)	206, 433, 465, 475, 492
Mva1269I	GAATGC	2 cut(s)	167, 798
MvnI	CGCG	3 cut(s)	141, 177, 254
MwoI	GCNNNNNNNGC	7 cut(s)	211, 279, 288, 294, 297, 300, 309
NaeI	GCCGGC	1 cut(s)	207
NdeII	GATC	3 cut(s)	355, 563, 606
NgoMIV	GCCGGC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	148, 356, 362
NlaIV	GGNNCC	4 cut(s)	37, 427, 428, 469
NmeAIII	GCCGAG	2 cut(s)	228, 396
NmuCI	GTSAC	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	458
PagI	TCATGA	2 cut(s)	352, 358
PctI	GAATGC	2 cut(s)	167, 798
PdiI	GCCGGC	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	382, 663
PkrI	GCNGC	9 cut(s)	256, 259, 290, 293, 296, 299, 302, 401, 557
PpuMI	RGGWCCY	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	426
PspN4I	GGNNCC	4 cut(s)	37, 427, 428, 469
PspPI	GGNCC	5 cut(s)	35, 193, 208, 426, 467
PspPPI	RGGWCCY	1 cut(s)	426
PstI	CTGCAG	1 cut(s)	299
PstNI	CAGNNNCTG	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	282
RsaI	GTAC	4 cut(s)	59, 149, 331, 674
RsaNI	GTAC	4 cut(s)	58, 148, 330, 673
RseI	CAYNNNNRTG	1 cut(s)	357
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	4 cut(s)	54, 516, 714, 725
SatI	GCNGC	9 cut(s)	255, 258, 289, 292, 295, 298, 301, 400, 556
Sau3AI	GATC	3 cut(s)	355, 563, 606
Sau96I	GGNCC	5 cut(s)	35, 193, 208, 426, 467
SduI	GDGCHC	1 cut(s)	459
SfcI	CTRYAG	3 cut(s)	283, 295, 559
Sfr274I	CTCGAG	1 cut(s)	458
SgrAI	CRCCGGYG	1 cut(s)	491
SinI	GGWCC	1 cut(s)	426
SlaI	CTCGAG	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	116, 726
SsiI	CCGC	3 cut(s)	254, 257, 291
SspMI	CTAG	1 cut(s)	809
SstI	GAGCTC	1 cut(s)	459
TaaI	ACNGT	3 cut(s)	152, 308, 641
TaiI	ACGT	2 cut(s)	423, 787
TaqI	TCGA	4 cut(s)	122, 189, 459, 666
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	2 cut(s)	116, 726
TauI	GCSGC	3 cut(s)	257, 260, 294
TfiI	GAWTC	2 cut(s)	382, 663
Tru1I	TTAA	4 cut(s)	54, 516, 714, 725
Tru9I	TTAA	4 cut(s)	54, 516, 714, 725
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	6 cut(s)	288, 294, 297, 300, 399, 555
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	426
XapI	RAATTY	1 cut(s)	116
XhoI	CTCGAG	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.