Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003558

Physical Location & Seq

Genomic Coordinates Reverse (-)

42885587 .. 42886609

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0346900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCTGTTGTGCATGAAGTAGGGGATGCATCTCCTCTTGTTTTAACACGTATTCATGCAGTCTGTTCAAATGTTGGAACCGAAGGTTGTGATTGGCATCTTCGCGCTCTGTCATCATCTGCCAATGGTTGCCTTTATATAACAGAGTTGAATAATATTCACACTTGCAAGGGTGTAGTTAGGACTCAAAAGCACAAGCTTTTGGGATCCAAGGTTGTCAAGACTTGCATTGCTGCCGATGTTAGCTATAATCTTTCATTGAAGCCAAGGGAGATTATGAGTGAGTTCAAGTTAACATATGGGTTTGATATTTCCTACAAGGTTGCCTTGAAAGCAAAGCATAGGGCTAAGGAAGCAATATATGGTTCTGATGCAGATTCATTCAGCAAGTTATCTTGGTATAAGGAAGCTGTTTTGCTGAGTAACCCGGGCTCTTCTTTTGTGCTGGAAGTTGACCCATCTACTAATCGTTTTCAGTGGCTTTTTGTGGTTTACGGAGGTTGTGTTAAAGGCTTCCAATTCTGTTTGCCTGTGTTTTATGTTGATGGAACGTTTGGTAAAAGCATTTACAAGGGTCAGATTCTTTCTGCAACTGGAAGGAATGGAAATCAAGATGGGTCGGCAGATACCATGCGCAGCTGCGCAGCAGTTGAAGCGCTTCCTTCAGACAACAGTGCTTGGTTTCAAGCTGTTGTATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

233

Amino Acids

25.43

Weight (kDa)

8.52

Isoelectric Point (pI)

26.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59990 AT5G59990
fragaria_vesca	FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540
malus_domestica	MD03G1105500.v1.1 MD11G1118000.v1.1
prunus_persica	Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1
pyrus_communis	pycom03g08470 pycom11g09890
rosa_chinensis	RchiOBHm_Chr5g0062181
rosa_laevigata	RLG00000035540
rosa_multiflora	Rmu_ssc0000409.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018530
rosa_rugosa	Rorug05G0346600 Rorug05G0346700 Rorug05G0346800 Rorug05G0346900 Rorug05G0347000 Rorug05G0347100 Rorug05G0347200 Rorug05G0347200
rosa_samantha	Rh5AG407600 Rh5BG421300 Rh5CG445300 Rh5DG436300
rosa_wichuraiana	Rw5G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	635, 643
AccII	CGCG	1 cut(s)	105
AclI	AACGTT	1 cut(s)	551
AclWI	GGATC	2 cut(s)	201, 214
AcuI	CTGAAG	1 cut(s)	648
AfeI	AGCGCT	1 cut(s)	657
AflIII	ACRYGT	1 cut(s)	47
AgsI	TTSAA	7 cut(s)	69, 151, 262, 289, 331, 653, 686
AluBI	AGCT	5 cut(s)	199, 246, 410, 639, 689
AluI	AGCT	5 cut(s)	199, 246, 410, 639, 689
AlwI	GGATC	2 cut(s)	201, 214
Ama87I	CYCGRG	1 cut(s)	427
Aor51HI	AGCGCT	1 cut(s)	657
ApeKI	GCWGC	4 cut(s)	233, 636, 639, 644
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	4 cut(s)	107, 636, 644, 658
AsuC2I	CCSGG	2 cut(s)	428, 429
AvaI	CYCGRG	1 cut(s)	427
BamHI	GGATCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	434
BbvI	GCAGC	4 cut(s)	220, 626, 648, 656
BccI	CCATC	3 cut(s)	466, 539, 608
BcnI	CCSGG	2 cut(s)	428, 429
BfoI	RGCGCY	1 cut(s)	659
BisI	GCNGC	4 cut(s)	234, 637, 640, 645
BlsI	GCNGC	4 cut(s)	235, 638, 641, 646
Bme1390I	CCNGG	2 cut(s)	428, 429
BmeT110I	CYCGRG	1 cut(s)	427
BmiI	GGNNCC	2 cut(s)	79, 208
BmrFI	CCNGG	2 cut(s)	428, 429
BmsI	GCATC	4 cut(s)	16, 38, 106, 361
Bpu10I	CCTNAGC	1 cut(s)	348
BpuMI	CCSGG	2 cut(s)	428, 429
BsaAI	YACGTR	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	96
BsaJI	CCNNGG	3 cut(s)	210, 266, 427
BsaXI	ACNNNNNCTCC	2 cut(s)	489, 519
Bse1I	ACTGG	1 cut(s)	598
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	96
BseDI	CCNNGG	3 cut(s)	210, 266, 427
BseGI	GGATG	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	4 cut(s)	220, 626, 648, 656
Bsh1236I	CGCG	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	428
BsoBI	CYCGRG	1 cut(s)	427
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	79, 208
BspPI	GGATC	2 cut(s)	201, 214
BspQI	GCTCTTC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	598
BssECI	CCNNGG	3 cut(s)	210, 266, 427
BssMI	GATC	1 cut(s)	206
BssT1I	CCWWGG	2 cut(s)	210, 266
Bst4CI	ACNGT	1 cut(s)	674
Bst6I	CTCTTC	1 cut(s)	439
BstBAI	YACGTR	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	348, 419
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	659
BstHHI	GCGC	4 cut(s)	107, 636, 644, 658
BstKTI	GATC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 353, 653
BstSCI	CCNGG	2 cut(s)	426, 427
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	4 cut(s)	220, 626, 648, 656
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	482, 679
CfoI	GCGC	4 cut(s)	107, 636, 644, 658
Cfr9I	CCCGGG	1 cut(s)	427
CviAII	CATG	3 cut(s)	14, 56, 631
DdeI	CTNAG	2 cut(s)	348, 419
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Eco130I	CCWWGG	2 cut(s)	210, 266
Eco24I	GRGCYC	1 cut(s)	434
Eco47III	AGCGCT	1 cut(s)	657
Eco57I	CTGAAG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	427
EcoT14I	CCWWGG	2 cut(s)	210, 266
EcoT22I	ATGCAT	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	434
ErhI	CCWWGG	2 cut(s)	210, 266
FaeI	CATG	3 cut(s)	17, 59, 634
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	3 cut(s)	13, 55, 630
FauNDI	CATATG	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	234, 637, 640, 645
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	4 cut(s)	234, 637, 640, 645
FspI	TGCGCA	2 cut(s)	635, 643
GlaI	GCGC	4 cut(s)	106, 635, 643, 657
GluI	GCNGC	4 cut(s)	234, 637, 640, 645
HaeII	RGCGCY	1 cut(s)	659
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	4 cut(s)	107, 636, 644, 658
Hin1II	CATG	3 cut(s)	17, 59, 634
Hin6I	GCGC	4 cut(s)	105, 634, 642, 656
HinP1I	GCGC	4 cut(s)	105, 634, 642, 656
HincII	GTYRAC	2 cut(s)	294, 454
HindII	GTYRAC	2 cut(s)	294, 454
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	3 cut(s)	184, 377, 580
HpaI	GTTAAC	1 cut(s)	294
HpaII	CCGG	1 cut(s)	428
Hpy166II	GTNNAC	3 cut(s)	294, 454, 493
Hpy188I	TCNGA	3 cut(s)	370, 579, 667
Hpy188III	TCNNGA	2 cut(s)	220, 611
Hpy8I	GTNNAC	3 cut(s)	294, 454, 493
HpyAV	CCTTC	3 cut(s)	77, 591, 672
HpyCH4III	ACNGT	1 cut(s)	674
HpyCH4IV	ACGT	2 cut(s)	49, 551
HpyCH4V	TGCA	7 cut(s)	13, 29, 59, 168, 228, 374, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 353, 653
HpyF3I	CTNAG	2 cut(s)	348, 419
HpySE526I	ACGT	2 cut(s)	49, 551
Hsp92II	CATG	3 cut(s)	17, 59, 634
HspAI	GCGC	4 cut(s)	105, 634, 642, 656
KspAI	GTTAAC	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	206
LguI	GCTCTTC	1 cut(s)	439
LpnPI	CCDG	4 cut(s)	431, 441, 543, 579
Lsp1109I	GCAGC	4 cut(s)	220, 626, 648, 656
LweI	GCATC	4 cut(s)	16, 38, 106, 361
MaeII	ACGT	2 cut(s)	49, 551
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MboII	GAAGA	2 cut(s)	92, 426
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	1 cut(s)	518
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	45, 491
Mph1103I	ATGCAT	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	4 cut(s)	44, 293, 507, 700
MspA1I	CMGCKG	1 cut(s)	639
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	2 cut(s)	428, 429
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	332, 353, 653
NciI	CCSGG	2 cut(s)	428, 429
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	1 cut(s)	206
NlaIII	CATG	3 cut(s)	17, 59, 634
NlaIV	GGNNCC	2 cut(s)	79, 208
NsbI	TGCGCA	2 cut(s)	635, 643
NsiI	ATGCAT	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	2 cut(s)	377, 580
PkrI	GCNGC	4 cut(s)	235, 638, 641, 646
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Ppu21I	YACGTR	1 cut(s)	50
Psp1406I	AACGTT	1 cut(s)	551
PspN4I	GGNNCC	2 cut(s)	79, 208
PsuI	RGATCY	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	639
SapI	GCTCTTC	1 cut(s)	439
SaqAI	TTAA	4 cut(s)	44, 293, 507, 700
SatI	GCNGC	4 cut(s)	234, 637, 640, 645
Sau3AI	GATC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	428, 429
SduI	GDGCHC	1 cut(s)	434
SfaNI	GCATC	4 cut(s)	16, 38, 106, 361
SmaI	CCCGGG	1 cut(s)	429
Sse9I	AATT	1 cut(s)	518
SspI	AATATT	1 cut(s)	157
StyD4I	CCNGG	2 cut(s)	426, 427
StyI	CCWWGG	2 cut(s)	210, 266
TaaI	ACNGT	1 cut(s)	674
TaiI	ACGT	2 cut(s)	52, 554
TasI	AATT	1 cut(s)	518
TfiI	GAWTC	2 cut(s)	377, 580
Tru1I	TTAA	4 cut(s)	44, 293, 507, 700
Tru9I	TTAA	4 cut(s)	44, 293, 507, 700
TscAI	CASTG	2 cut(s)	482, 679
TseI	GCWGC	4 cut(s)	233, 636, 639, 644
TspDTI	ATGAA	4 cut(s)	30, 44, 246, 369
TspGWI	ACGGA	1 cut(s)	510
TspMI	CCCGGG	1 cut(s)	427
TspRI	CASTG	2 cut(s)	482, 679
XmaI	CCCGGG	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	657
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.