Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000409.1

Orthogroup ID

OG0003558

Physical Location & Seq

Genomic Coordinates Forward (+)

35852 .. 37372

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000409.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgtttttcggtgttgatggcatgcagaggattaacagtactaatggggtgcaagtgcagcaattgcatagcagctacagatcatcatcagaaagtagtccattgtcaagcgagagcagtatgatcattgaaggaatgagcaaagcctgtcgttacagtcctgaggagaagaaagagagaatcgagaggtacagaagcaagagaaacctcaggaacttcaacaaaacgattaagtatgcatgtaggaagacattggcggacagcaggccgcgcatcagagggcgatttgcaaggaatgatgaaattgatcagaagaattcccctaatgttcagtggagccaaatgagtggggaggaagatgaagaggatggcgatggttggatcaacctgcttgatgcattctcttcaatcgaatcaaattccttaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

143

Amino Acids

16.45

Weight (kDa)

7.75

Isoelectric Point (pI)

80.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59990 AT5G59990
fragaria_vesca	FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540
malus_domestica	MD03G1105500.v1.1 MD11G1118000.v1.1
prunus_persica	Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1
pyrus_communis	pycom03g08470 pycom11g09890
rosa_chinensis	RchiOBHm_Chr5g0062181
rosa_laevigata	RLG00000035540
rosa_multiflora	Rmu_ssc0000409.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018530
rosa_rugosa	Rorug05G0346600 Rorug05G0346700 Rorug05G0346800 Rorug05G0346900 Rorug05G0347000 Rorug05G0347100 Rorug05G0347200 Rorug05G0347200
rosa_samantha	Rh5AG407600 Rh5BG421300 Rh5CG445300 Rh5DG436300
rosa_wichuraiana	Rw5G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	396
AccII	CGCG	1 cut(s)	271
AciI	CCGC	2 cut(s)	257, 269
AclWI	GGATC	1 cut(s)	389
AcsI	RAATTY	2 cut(s)	316, 418
AfaI	GTAC	2 cut(s)	40, 191
AgsI	TTSAA	3 cut(s)	131, 220, 408
AluBI	AGCT	1 cut(s)	75
AluI	AGCT	1 cut(s)	75
AlwI	GGATC	1 cut(s)	389
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	2 cut(s)	58, 72
ApoI	RAATTY	2 cut(s)	316, 418
AspLEI	GCGC	1 cut(s)	273
AxyI	CCTNAGG	2 cut(s)	162, 209
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	70, 84
BccI	CCATC	3 cut(s)	11, 362, 368
BclI	TGATCA	2 cut(s)	123, 307
BfaI	CTAG	1 cut(s)	430
BfmI	CTRYAG	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	396
BisI	GCNGC	3 cut(s)	59, 73, 269
BlsI	GCNGC	3 cut(s)	60, 74, 270
BmcAI	AGTACT	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	338
BmsI	GCATC	2 cut(s)	282, 385
BpiI	GAAGAC	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	85
Bse21I	CCTNAGG	2 cut(s)	162, 209
Bse8I	GATNNNNATC	1 cut(s)	85
BseGI	GGATG	1 cut(s)	373
BseJI	GATNNNNATC	1 cut(s)	85
BseMII	CTCAG	2 cut(s)	153, 223
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	70, 84
BsgI	GTGCAG	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	268
Bsp143I	GATC	4 cut(s)	80, 123, 307, 381
BspACI	CCGC	2 cut(s)	257, 269
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	154, 222
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	338
BspMI	ACCTGC	1 cut(s)	396
BspPI	GGATC	1 cut(s)	389
BssMI	GATC	4 cut(s)	80, 123, 307, 381
Bst4CI	ACNGT	2 cut(s)	38, 158
Bst6I	CTCTTC	2 cut(s)	357, 409
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	23, 266
BstDEI	CTNAG	2 cut(s)	162, 209
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	4 cut(s)	83, 126, 310, 384
BstMBI	GATC	4 cut(s)	80, 123, 307, 381
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 64, 270
BstNSI	RCATGY	2 cut(s)	25, 243
BstSFI	CTRYAG	1 cut(s)	76
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	70, 84
BstV2I	GAAGAC	1 cut(s)	254
BstXI	CCANNNNNNTGG	1 cut(s)	347
Bsu36I	CCTNAGG	2 cut(s)	162, 209
BsuRI	GGCC	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	338
BveI	ACCTGC	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	23, 266
CfoI	GCGC	1 cut(s)	273
Csp6I	GTAC	2 cut(s)	39, 190
CviAII	CATG	2 cut(s)	22, 240
CviJI	RGCY	4 cut(s)	75, 146, 268, 339
CviKI_1	RGCY	4 cut(s)	75, 146, 268, 339
CviQI	GTAC	2 cut(s)	39, 190
DdeI	CTNAG	2 cut(s)	162, 209
DpnI	GATC	4 cut(s)	82, 125, 309, 383
DpnII	GATC	4 cut(s)	80, 123, 307, 381
Eam1104I	CTCTTC	2 cut(s)	357, 409
EarI	CTCTTC	2 cut(s)	357, 409
EciI	GGCGGA	1 cut(s)	272
Eco81I	CCTNAGG	2 cut(s)	162, 209
EcoRI	GAATTC	1 cut(s)	316
EcoT22I	ATGCAT	2 cut(s)	241, 400
FaeI	CATG	2 cut(s)	25, 243
FaiI	YATR	5 cut(s)	23, 69, 122, 237, 241
FatI	CATG	2 cut(s)	21, 239
FbaI	TGATCA	2 cut(s)	123, 307
Fnu4HI	GCNGC	3 cut(s)	59, 73, 269
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	3 cut(s)	59, 73, 269
FspBI	CTAG	1 cut(s)	430
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	3 cut(s)	59, 73, 269
HaeIII	GGCC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	25, 243
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	2 cut(s)	180, 413
Hpy188I	TCNGA	3 cut(s)	91, 278, 312
Hpy188III	TCNNGA	3 cut(s)	161, 184, 211
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	2 cut(s)	38, 158
HpyCH4V	TGCA	7 cut(s)	25, 52, 58, 67, 239, 290, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 64, 270
HpyF3I	CTNAG	2 cut(s)	162, 209
Hsp92II	CATG	2 cut(s)	25, 243
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	2 cut(s)	123, 307
Kzo9I	GATC	4 cut(s)	80, 123, 307, 381
LmnI	GCTCC	1 cut(s)	336
LpnPI	CCDG	5 cut(s)	160, 174, 196, 250, 401
Lsp1109I	GCAGC	2 cut(s)	70, 84
LweI	GCATC	2 cut(s)	282, 385
MaeI	CTAG	1 cut(s)	430
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	4 cut(s)	82, 125, 309, 383
MboI	GATC	4 cut(s)	80, 123, 307, 381
MboII	GAAGA	6 cut(s)	181, 259, 325, 368, 374, 396
MfeI	CAATTG	1 cut(s)	62
MluCI	AATT	4 cut(s)	62, 303, 316, 418
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	7 cut(s)	21, 157, 180, 218, 272, 346, 358
Mph1103I	ATGCAT	2 cut(s)	241, 400
MseI	TTAA	3 cut(s)	33, 231, 425
MunI	CAATTG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	398
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	3 cut(s)	58, 64, 270
NdeII	GATC	4 cut(s)	80, 123, 307, 381
NlaIII	CATG	2 cut(s)	25, 243
NlaIV	GGNNCC	1 cut(s)	338
NsiI	ATGCAT	2 cut(s)	241, 400
NspI	RCATGY	2 cut(s)	25, 243
PaeI	GCATGC	1 cut(s)	25
PctI	GAATGC	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	180, 413
PkrI	GCNGC	3 cut(s)	60, 74, 270
PspN4I	GGNNCC	1 cut(s)	338
RsaI	GTAC	2 cut(s)	40, 191
RsaNI	GTAC	2 cut(s)	39, 190
SaqAI	TTAA	3 cut(s)	33, 231, 425
SatI	GCNGC	3 cut(s)	59, 73, 269
Sau3AI	GATC	4 cut(s)	80, 123, 307, 381
ScaI	AGTACT	1 cut(s)	40
SetI	ASST	4 cut(s)	77, 191, 210, 390
SfaNI	GCATC	2 cut(s)	282, 385
SfcI	CTRYAG	1 cut(s)	76
SphI	GCATGC	1 cut(s)	25
Sse9I	AATT	4 cut(s)	62, 303, 316, 418
SsiI	CCGC	2 cut(s)	257, 269
SspMI	CTAG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	38, 158
TaqI	TCGA	2 cut(s)	183, 411
TasI	AATT	4 cut(s)	62, 303, 316, 418
TatI	WGTACW	1 cut(s)	38
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	180, 413
Tru1I	TTAA	3 cut(s)	33, 231, 425
Tru9I	TTAA	3 cut(s)	33, 231, 425
TscAI	CASTG	1 cut(s)	338
TseI	GCWGC	2 cut(s)	58, 72
TspDTI	ATGAA	2 cut(s)	315, 375
TspRI	CASTG	1 cut(s)	338
XapI	RAATTY	2 cut(s)	316, 418
XceI	RCATGY	2 cut(s)	25, 243
XspI	CTAG	1 cut(s)	430
ZrmI	AGTACT	1 cut(s)	40
Zsp2I	ATGCAT	2 cut(s)	241, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.