Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003558

Physical Location & Seq

Genomic Coordinates Reverse (-)

9053283 .. 9056562

Gene Structure 3280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1105500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTACGGACACAACAGCACCGCATTCCCACGCGCCCCCGATTTTCAGTATCATCACGGCTCGCATGCGGCTCTTCCGTTGCCATATCATCACGACCACCTTGTCTCCGCCGAGTTCAGCAACAGCTGTAGCAGCGGCTCCAGCAGCTACGGAGCCTCGCCGATCAGCAACGGGGCTTACGAGTGCTACGGAGAACCGGACCCGAACCTGATTCAGCGAAGCGTCAGCAGCCATTCACTGCAGAAGACTTGCGGGACCCACAAGTTGGTCTCCGACTTGCTGGAGTCAGAAACCGGCCATGTCCGCCGGGTTTATAGCACTGGGGACTTGGATTTGCAGACAATTAATAGCAAGAACAGTAATGGGGTGCAAGTAGTGCAGCAATTGCAGTATGGTGGTTATAATAGAACATCATCAGAAAGTAGTCTGCTATCGAGTGAGACCAGTATGATTATAGAAGGGATGAGCAAAGCCTGTCGGTATAGTCCCGAGGAGAAGAAGGAGAGAATTGAGAGGTATAGAAGCAAGCGCAACCAAAGAAACTTCAGCAAGACCATTAAGTACGCTTGTAGGAAGACATTGGCAGACAGCCGGCCGCGCATCAGAGGCCGGTTTGCAAGGAATGATGAAATTGAGAAGAGTCCTAATGTTCAATGGAGCAACATGAGTGGGGAAGAAGATGAGGAGGAGGACGATAGTTGGTTCAACCTTCTCGATGCATTTTCTTCAATCGAATCTAATTCTGTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

251

Amino Acids

28.12

Weight (kDa)

6.21

Isoelectric Point (pI)

64.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	167 - 208	8e-19	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59990 AT5G59990
fragaria_vesca	FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540
malus_domestica	MD03G1105500.v1.1 MD11G1118000.v1.1
prunus_persica	Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1
pyrus_communis	pycom03g08470 pycom11g09890
rosa_chinensis	RchiOBHm_Chr5g0062181
rosa_laevigata	RLG00000035540
rosa_multiflora	Rmu_ssc0000409.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018530
rosa_rugosa	Rorug05G0346600 Rorug05G0346700 Rorug05G0346800 Rorug05G0346900 Rorug05G0347000 Rorug05G0347100 Rorug05G0347200 Rorug05G0347200
rosa_samantha	Rh5AG407600 Rh5BG421300 Rh5CG445300 Rh5DG436300
rosa_wichuraiana	Rw5G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AasI	GACNNNNNNGTC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccII	CGCG	2 cut(s)	33, 598
AciI	CCGC	7 cut(s)	21, 68, 108, 135, 252, 304, 596
AcoI	YGGCCR	2 cut(s)	295, 593
AcuI	CTGAAG	1 cut(s)	529
AfaI	GTAC	2 cut(s)	5, 563
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	653, 706, 729
AluBI	AGCT	2 cut(s)	126, 147
AluI	AGCT	2 cut(s)	126, 147
Alw26I	GTCTC	3 cut(s)	109, 274, 434
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	3 cut(s)	295, 593, 607
ApeKI	GCWGC	4 cut(s)	132, 144, 228, 379
AseI	ATTAAT	1 cut(s)	345
AspLEI	GCGC	3 cut(s)	35, 531, 600
AspS9I	GGNCC	2 cut(s)	199, 255
AsuC2I	CCSGG	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	2 cut(s)	199, 255
BbsI	GAAGAC	2 cut(s)	251, 581
BbvI	GCAGC	4 cut(s)	144, 156, 240, 391
BceAI	ACGGC	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	3 cut(s)	109, 274, 434
BfaI	CTAG	1 cut(s)	751
BfmI	CTRYAG	2 cut(s)	127, 239
BisI	GCNGC	7 cut(s)	69, 133, 136, 145, 229, 380, 596
BlsI	GCNGC	7 cut(s)	70, 134, 137, 146, 230, 381, 597
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	2 cut(s)	199, 255
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	199, 255
BmiI	GGNNCC	5 cut(s)	139, 154, 201, 256, 257
BmrFI	CCNGG	1 cut(s)	308
BmrI	ACTGGG	1 cut(s)	330
BmsI	GCATC	2 cut(s)	609, 706
BmuI	ACTGGG	1 cut(s)	330
BpiI	GAAGAC	2 cut(s)	251, 581
BpmI	CTGGAG	2 cut(s)	124, 302
BpuMI	CCSGG	1 cut(s)	308
BsaI	GGTCTC	2 cut(s)	274, 434
BsaJI	CCNNGG	1 cut(s)	489
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse118I	RCCGGY	3 cut(s)	293, 591, 609
Bse1I	ACTGG	2 cut(s)	325, 444
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	468
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseNI	ACTGG	2 cut(s)	325, 444
BseRI	GAGGAG	3 cut(s)	506, 698, 701
BseX3I	CGGCCG	1 cut(s)	593
BseXI	GCAGC	4 cut(s)	144, 156, 240, 391
BsgI	GTGCAG	1 cut(s)	398
Bsh1236I	CGCG	2 cut(s)	33, 598
Bsh1285I	CGRYCG	1 cut(s)	596
BshFI	GGCC	3 cut(s)	297, 595, 609
BsiEI	CGRYCG	1 cut(s)	596
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	5 cut(s)	197, 294, 307, 592, 610
BslFI	GGGAC	3 cut(s)	268, 338, 471
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	3 cut(s)	109, 274, 434
BsmFI	GGGAC	3 cut(s)	268, 338, 471
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	3 cut(s)	297, 595, 609
Bso31I	GGTCTC	2 cut(s)	274, 434
BsoBI	CYCGRG	1 cut(s)	488
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	7 cut(s)	21, 68, 108, 135, 252, 304, 596
BspANI	GGCC	3 cut(s)	297, 595, 609
BspFNI	CGCG	2 cut(s)	33, 598
BspLI	GGNNCC	5 cut(s)	139, 154, 201, 256, 257
BspMAI	CTGCAG	1 cut(s)	243
BspQI	GCTCTTC	1 cut(s)	78
BspTNI	GGTCTC	2 cut(s)	274, 434
BsrFI	RCCGGY	3 cut(s)	293, 591, 609
BsrI	ACTGG	2 cut(s)	325, 444
BssAI	RCCGGY	3 cut(s)	293, 591, 609
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	2 cut(s)	78, 632
BstAPI	GCANNNNNTGC	2 cut(s)	376, 385
BstC8I	GCNNGC	4 cut(s)	62, 66, 527, 593
BstF5I	GGATG	1 cut(s)	468
BstFNI	CGCG	2 cut(s)	33, 598
BstHHI	GCGC	3 cut(s)	35, 531, 600
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	3 cut(s)	109, 274, 434
BstMBI	GATC	1 cut(s)	162
BstMCI	CGRYCG	1 cut(s)	596
BstMWI	GCNNNNNNNGC	9 cut(s)	132, 141, 144, 228, 303, 376, 385, 597, 606
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	2 cut(s)	127, 239
BstUI	CGCG	2 cut(s)	33, 598
BstV1I	GCAGC	4 cut(s)	144, 156, 240, 391
BstV2I	GAAGAC	2 cut(s)	251, 581
BstZI	CGGCCG	1 cut(s)	593
BsuRI	GGCC	3 cut(s)	297, 595, 609
BtsCI	GGATG	1 cut(s)	468
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	2 cut(s)	236, 318
Cac8I	GCNNGC	4 cut(s)	62, 66, 527, 593
CfoI	GCGC	3 cut(s)	35, 531, 600
Cfr10I	RCCGGY	3 cut(s)	293, 591, 609
Cfr13I	GGNCC	2 cut(s)	199, 255
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	4, 562
CspCI	CAANNNNNGTGG	2 cut(s)	649, 684
CviAII	CATG	3 cut(s)	65, 299, 664
CviQI	GTAC	2 cut(s)	4, 562
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	2 cut(s)	295, 593
EagI	CGGCCG	1 cut(s)	593
Eam1104I	CTCTTC	2 cut(s)	78, 632
EarI	CTCTTC	2 cut(s)	78, 632
EciI	GGCGGA	2 cut(s)	97, 293
EclXI	CGGCCG	1 cut(s)	593
Eco31I	GGTCTC	2 cut(s)	274, 434
Eco47I	GGWCC	2 cut(s)	199, 255
Eco52I	CGGCCG	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	529
Eco88I	CYCGRG	1 cut(s)	488
EcoO109I	RGGNCCY	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	721
FaeI	CATG	3 cut(s)	68, 302, 667
FaqI	GGGAC	3 cut(s)	268, 338, 471
FatI	CATG	3 cut(s)	64, 298, 663
FauI	CCCGC	1 cut(s)	245
Fnu4HI	GCNGC	7 cut(s)	69, 133, 136, 145, 229, 380, 596
FokI	GGATG	1 cut(s)	475
Fsp4HI	GCNGC	7 cut(s)	69, 133, 136, 145, 229, 380, 596
FspBI	CTAG	1 cut(s)	751
GlaI	GCGC	3 cut(s)	34, 530, 599
GluI	GCNGC	7 cut(s)	69, 133, 136, 145, 229, 380, 596
GsuI	CTGGAG	2 cut(s)	124, 302
HaeIII	GGCC	3 cut(s)	297, 595, 609
HapII	CCGG	5 cut(s)	197, 294, 307, 592, 610
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	3 cut(s)	35, 531, 600
Hin1II	CATG	3 cut(s)	68, 302, 667
Hin6I	GCGC	3 cut(s)	33, 529, 598
HinP1I	GCGC	3 cut(s)	33, 529, 598
HinfI	GANTC	4 cut(s)	211, 284, 640, 734
HpaII	CCGG	5 cut(s)	197, 294, 307, 592, 610
Hpy188I	TCNGA	4 cut(s)	274, 289, 418, 605
Hpy188III	TCNNGA	3 cut(s)	92, 488, 713
HpyAV	CCTTC	3 cut(s)	452, 493, 719
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	7 cut(s)	241, 337, 370, 379, 388, 617, 719
HpyF10VI	GCNNNNNNNGC	9 cut(s)	132, 141, 144, 228, 303, 376, 385, 597, 606
Hsp92II	CATG	3 cut(s)	68, 302, 667
HspAI	GCGC	3 cut(s)	33, 529, 598
KflI	GGGWCCC	1 cut(s)	255
KroI	GCCGGC	1 cut(s)	591
KroNI	GCCGGC	1 cut(s)	593
Kzo9I	GATC	1 cut(s)	162
LguI	GCTCTTC	1 cut(s)	78
LmnI	GCTCC	3 cut(s)	143, 152, 657
Lsp1109I	GCAGC	4 cut(s)	144, 156, 240, 391
LweI	GCATC	2 cut(s)	609, 706
MaeI	CTAG	1 cut(s)	751
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	8 cut(s)	65, 256, 508, 586, 649, 686, 689, 717
MfeI	CAATTG	1 cut(s)	383
MluCI	AATT	5 cut(s)	342, 383, 507, 630, 739
MlyI	GAGTC	2 cut(s)	293, 649
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	7 cut(s)	166, 484, 507, 599, 676, 679, 682
Mph1103I	ATGCAT	1 cut(s)	721
MroNI	GCCGGC	1 cut(s)	591
MseI	TTAA	2 cut(s)	345, 558
MspA1I	CMGCKG	2 cut(s)	126, 135
MspI	CCGG	5 cut(s)	197, 294, 307, 592, 610
MspR9I	CCNGG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	23
MvnI	CGCG	2 cut(s)	33, 598
MwoI	GCNNNNNNNGC	9 cut(s)	132, 141, 144, 228, 303, 376, 385, 597, 606
NaeI	GCCGGC	1 cut(s)	593
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	1 cut(s)	162
NgoMIV	GCCGGC	1 cut(s)	591
NlaIII	CATG	3 cut(s)	68, 302, 667
NlaIV	GGNNCC	5 cut(s)	139, 154, 201, 256, 257
NmeAIII	GCCGAG	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	721
NspI	RCATGY	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	68
PciSI	GCTCTTC	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	23
PdiI	GCCGGC	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	211, 734
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	7 cut(s)	70, 134, 137, 146, 230, 381, 597
PleI	GAGTC	2 cut(s)	292, 648
PpsI	GAGTC	2 cut(s)	292, 648
PpuMI	RGGWCCY	1 cut(s)	255
PshBI	ATTAAT	1 cut(s)	345
PsiI	TTATAA	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	255
PspN4I	GGNNCC	5 cut(s)	139, 154, 201, 256, 257
PspPI	GGNCC	2 cut(s)	199, 255
PspPPI	RGGWCCY	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	243
PvuII	CAGCTG	1 cut(s)	126
RsaI	GTAC	2 cut(s)	5, 563
RsaNI	GTAC	2 cut(s)	4, 562
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	345, 558
SatI	GCNGC	7 cut(s)	69, 133, 136, 145, 229, 380, 596
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	2 cut(s)	199, 255
SchI	GAGTC	2 cut(s)	293, 649
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	6 cut(s)	102, 128, 149, 210, 518, 711
SfaNI	GCATC	2 cut(s)	609, 706
SfcI	CTRYAG	2 cut(s)	127, 239
SinI	GGWCC	2 cut(s)	199, 255
SphI	GCATGC	1 cut(s)	68
Sse9I	AATT	5 cut(s)	342, 383, 507, 630, 739
SsiI	CCGC	7 cut(s)	21, 68, 108, 135, 252, 304, 596
SspMI	CTAG	1 cut(s)	751
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	3 cut(s)	434, 714, 732
TasI	AATT	5 cut(s)	342, 383, 507, 630, 739
TauI	GCSGC	3 cut(s)	71, 138, 598
TfiI	GAWTC	2 cut(s)	211, 734
Tru1I	TTAA	2 cut(s)	345, 558
Tru9I	TTAA	2 cut(s)	345, 558
TscAI	CASTG	2 cut(s)	243, 325
TseI	GCWGC	4 cut(s)	132, 144, 228, 379
TspDTI	ATGAA	1 cut(s)	642
TspGWI	ACGGA	4 cut(s)	21, 66, 165, 204
TspRI	CASTG	2 cut(s)	243, 325
Van91I	CCANNNNNTGG	1 cut(s)	265
VpaK11BI	GGWCC	2 cut(s)	199, 255
VspI	ATTAAT	1 cut(s)	345
XceI	RCATGY	1 cut(s)	68
XspI	CTAG	1 cut(s)	751
Zsp2I	ATGCAT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.