Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003558

Physical Location & Seq

Genomic Coordinates Forward (+)

42880603 .. 42882253

Gene Structure 1651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0346700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCGGGATCACAATCTGCTAGTGTATCGAAGAAGACAAAGTCGAAGGAAAAACGTTCGAAGCCTAAGAAGACCAAGTCTTTGAAGTCACCAACAACATCTTCATTTTCTGGTGGATCTCACTCAAAGAAGGGAAAGTCCAAAAAGAACGAAGTTGAACCAACCGGGGGACTAAAGTTGCTGAAGCGGCATGCGGTGACTATGTCACGCATTACAAGCCACAAGAATCGTATTCAGAAGAAGGTTGTTTTATTTAACCGAAAAGGGACCCCTTGTGGGAAGGTGGCTAAGCAAATGCAAAGCTACATTGGTGTATTGGCAAGAAGGAAGGTACCGATAATAAGGGAAAACTGGAAAGCGGCAACTGATGAAGAGAAGAACAAAATCTGGCAACGTGTTCAGGTTCCATTTTTGATTGGTCCTGAAGCTAAAAAATTGGTCTTGGAATCTGCTGCAACGAAGTGGAGGCAATTCAAGTCTCTACTTACTTCCAAGTACATTATCCCCTATTTGGATGACCATGAAGCCTTGCGATATCCTCCAGATGATTATCCTTTCATCCTTGCTGACCATTGGACAGAATTTGTGAAAATGCGGACGAAGGCCTCATTCCTGGAAAAGCGTCGTGAGCAACAAGAAAGGCGCAGCTTGAATAAGTATCCTCATAGAATGTCCCGTAAGGGATATGCAGGGTTGGAGGATGAGTTGGCTACCGGAATGAGTGACGAAGAAGTTGATAGGGCCACTTTGTGGATAAAAGGACGGCAAACAAAGGATGGCAGTTTCAATGATGAGGAGTCAAAAAAGACTGCTGAAAAGATAGCAAACTTGAAGAGAAAGGTTGCTAGTGGAGAACTAAATGCTGAAGGAACAAATGATGTCTTGACATTGGCTTTGGGGACTCCAGAGCATGGGGGAAGAGTGCGGGGAATAGGAGGTTTTGTCACTCCCTCTACTTACTTCCACCTCCCTAAACGTAGAAAGGAGAGCATAGAAGCTACTGTCAGAGTTAGTGTGCAGAAAATATTGTTAGAGGAGAGAGAGAAGATAGTAGAGGAGGCAAGGGAGAAGATACTAGAGGAGGCAAGGGAGAGGATAATACAGGAATCGAAAGAAAAAATACTTGTAGATGAGCGGGCTATGTGGGAGGCCAAGTTTGCTGAACTTGAAGCAAAGGTAAATGGAAAAGAAGGTGCAACTATTCAGCCACATATGCATCTGGCCAAGGAAGTTGCTCAAGGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

415

Amino Acids

47.2

Weight (kDa)

9.93

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	189 - 317	4e-14	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59990 AT5G59990
fragaria_vesca	FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540
malus_domestica	MD03G1105500.v1.1 MD11G1118000.v1.1
prunus_persica	Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1
pyrus_communis	pycom03g08470 pycom11g09890
rosa_chinensis	RchiOBHm_Chr5g0062181
rosa_laevigata	RLG00000035540
rosa_multiflora	Rmu_ssc0000409.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018530
rosa_rugosa	Rorug05G0346600 Rorug05G0346700 Rorug05G0346800 Rorug05G0346900 Rorug05G0347000 Rorug05G0347100 Rorug05G0347200 Rorug05G0347200
rosa_samantha	Rh5AG407600 Rh5BG421300 Rh5CG445300 Rh5DG436300
rosa_wichuraiana	Rw5G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	331
AccB7I	CCANNNNNTGG	2 cut(s)	750, 911
AccBSI	CCGCTC	1 cut(s)	1135
AciI	CCGC	7 cut(s)	5, 187, 194, 359, 595, 925, 1135
AclI	AACGTT	1 cut(s)	55
AclWI	GGATC	2 cut(s)	16, 124
AcoI	YGGCCR	1 cut(s)	1221
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	3 cut(s)	203, 444, 885
AdeI	CACNNNGTG	1 cut(s)	750
AfaI	GTAC	2 cut(s)	333, 497
AfiI	CCNNNNNNNGG	5 cut(s)	167, 276, 511, 750, 911
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	7 cut(s)	85, 158, 475, 652, 787, 832, 1169
AjnI	CCWGG	1 cut(s)	612
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
AluBI	AGCT	4 cut(s)	303, 428, 648, 998
AluI	AGCT	4 cut(s)	303, 428, 648, 998
Alw26I	GTCTC	1 cut(s)	483
AlwI	GGATC	2 cut(s)	16, 124
AoxI	GGCC	4 cut(s)	603, 741, 1149, 1221
ApeKI	GCWGC	2 cut(s)	452, 645
ApoI	RAATTY	1 cut(s)	581
ArsI	GACNNNNNNTTYG	4 cut(s)	64, 96, 877, 909
Asp718I	GGTACC	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	3 cut(s)	267, 419, 741
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	81, 208
AsuII	TTCGAA	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	267, 419
BalI	TGGCCA	1 cut(s)	1223
BanI	GGYRCC	1 cut(s)	331
BbsI	GAAGAC	2 cut(s)	41, 77
BbvI	GCAGC	2 cut(s)	439, 657
BccI	CCATC	1 cut(s)	770
BceAI	ACGGC	1 cut(s)	779
BciT130I	CCWGG	1 cut(s)	614
BciVI	GTATCC	1 cut(s)	669
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	483
BfaI	CTAG	3 cut(s)	21, 846, 1076
BfuI	GTATCC	1 cut(s)	669
BisI	GCNGC	4 cut(s)	188, 360, 453, 646
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	4 cut(s)	189, 361, 454, 647
Bme1390I	CCNGG	2 cut(s)	166, 614
Bme18I	GGWCC	2 cut(s)	267, 419
BmgT120I	GGNCC	3 cut(s)	267, 419, 741
BmiI	GGNNCC	4 cut(s)	268, 269, 333, 405
BmrFI	CCNGG	2 cut(s)	166, 614
BmsI	GCATC	1 cut(s)	1225
BpiI	GAAGAC	2 cut(s)	41, 77
BpmI	CTGGAG	2 cut(s)	525, 888
Bpu1102I	GCTNAGC	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	1221
BpuMI	CCSGG	1 cut(s)	166
BsaBI	GATNNNNATC	2 cut(s)	13, 549
BsaJI	CCNNGG	2 cut(s)	165, 1224
BsaWI	WCCGGW	1 cut(s)	713
BsaXI	ACNNNNNCTCC	6 cut(s)	689, 719, 927, 957, 1139, 1169
Bsc4I	CCNNNNNNNGG	5 cut(s)	167, 276, 511, 750, 911
Bse1I	ACTGG	1 cut(s)	356
Bse8I	GATNNNNATC	2 cut(s)	13, 549
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	2 cut(s)	165, 1224
BseGI	GGATG	4 cut(s)	520, 558, 706, 781
BseJI	GATNNNNATC	2 cut(s)	13, 549
BseLI	CCNNNNNNNGG	5 cut(s)	167, 276, 511, 750, 911
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	4 cut(s)	809, 1049, 1070, 1094
BseXI	GCAGC	2 cut(s)	439, 657
BsgI	GTGCAG	1 cut(s)	1037
BshFI	GGCC	4 cut(s)	605, 743, 1151, 1223
BshNI	GGYRCC	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	165, 714
BslFI	GGGAC	4 cut(s)	183, 280, 658, 913
BslI	CCNNNNNNNGG	5 cut(s)	167, 276, 511, 750, 911
BsmAI	GTCTC	1 cut(s)	483
BsmFI	GGGAC	4 cut(s)	183, 280, 658, 913
BsnI	GGCC	4 cut(s)	605, 743, 1151, 1223
Bsp119I	TTCGAA	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	8, 116
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	7 cut(s)	5, 187, 194, 359, 595, 925, 1135
BspANI	GGCC	4 cut(s)	605, 743, 1151, 1223
BspLI	GGNNCC	4 cut(s)	268, 269, 333, 405
BspPI	GGATC	2 cut(s)	16, 124
BspT104I	TTCGAA	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	331
BsrBI	CCGCTC	1 cut(s)	1135
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	165, 1224
BssMI	GATC	2 cut(s)	8, 116
BssT1I	CCWWGG	1 cut(s)	1224
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	2 cut(s)	1003, 1245
Bst6I	CTCTTC	3 cut(s)	366, 827, 913
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	192, 1137
BstDEI	CTNAG	2 cut(s)	66, 288
BstF5I	GGATG	4 cut(s)	520, 558, 706, 781
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	2 cut(s)	11, 119
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	2 cut(s)	8, 116
BstMWI	GCNNNNNNNGC	5 cut(s)	187, 216, 628, 1157, 1213
BstNI	CCWGG	1 cut(s)	614
BstNSI	RCATGY	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	164, 612
BstV1I	GCAGC	2 cut(s)	439, 657
BstV2I	GAAGAC	2 cut(s)	41, 77
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuI	GTATCC	1 cut(s)	669
BsuRI	GGCC	4 cut(s)	605, 743, 1151, 1223
BtsCI	GGATG	4 cut(s)	520, 558, 706, 781
Cac8I	GCNNGC	2 cut(s)	192, 1137
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	3 cut(s)	267, 419, 741
CseI	GACGC	1 cut(s)	611
Csp6I	GTAC	2 cut(s)	332, 496
CviAII	CATG	3 cut(s)	191, 521, 911
CviQI	GTAC	2 cut(s)	332, 496
DdeI	CTNAG	2 cut(s)	66, 288
DpnI	GATC	2 cut(s)	10, 118
DpnII	GATC	2 cut(s)	8, 116
DraIII	CACNNNGTG	1 cut(s)	750
EaeI	YGGCCR	1 cut(s)	1221
Eam1104I	CTCTTC	3 cut(s)	366, 827, 913
EarI	CTCTTC	3 cut(s)	366, 827, 913
Eco130I	CCWWGG	1 cut(s)	1224
Eco147I	AGGCCT	1 cut(s)	605
Eco32I	GATATC	1 cut(s)	536
Eco47I	GGWCC	2 cut(s)	267, 419
Eco57I	CTGAAG	3 cut(s)	203, 444, 885
EcoO109I	RGGNCCY	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	612
EcoRV	GATATC	1 cut(s)	536
EcoT14I	CCWWGG	1 cut(s)	1224
EcoT22I	ATGCAT	1 cut(s)	1218
ErhI	CCWWGG	1 cut(s)	1224
FaeI	CATG	3 cut(s)	194, 524, 914
FaqI	GGGAC	4 cut(s)	183, 280, 658, 913
FatI	CATG	3 cut(s)	190, 520, 910
FauI	CCCGC	2 cut(s)	918, 1128
FauNDI	CATATG	1 cut(s)	1212
Fnu4HI	GCNGC	4 cut(s)	188, 360, 453, 646
FokI	GGATG	4 cut(s)	527, 545, 713, 788
Fsp4HI	GCNGC	4 cut(s)	188, 360, 453, 646
FspBI	CTAG	3 cut(s)	21, 846, 1076
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	4 cut(s)	188, 360, 453, 646
GsuI	CTGGAG	2 cut(s)	525, 888
HaeIII	GGCC	4 cut(s)	605, 743, 1151, 1223
HapII	CCGG	2 cut(s)	165, 714
HgaI	GACGC	1 cut(s)	611
HhaI	GCGC	1 cut(s)	645
Hin1II	CATG	3 cut(s)	194, 524, 914
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HinfI	GANTC	5 cut(s)	226, 446, 797, 901, 1106
HpaII	CCGG	2 cut(s)	165, 714
HphI	GGTGA	2 cut(s)	81, 208
Hpy188I	TCNGA	2 cut(s)	237, 1007
Hpy188III	TCNNGA	5 cut(s)	422, 542, 626, 883, 905
Hpy99I	CGWCG	1 cut(s)	627
HpyAV	CCTTC	9 cut(s)	40, 124, 235, 274, 318, 322, 595, 860, 1184
HpyCH4III	ACNGT	2 cut(s)	1003, 1245
HpyCH4IV	ACGT	3 cut(s)	55, 394, 976
HpyCH4V	TGCA	6 cut(s)	298, 455, 689, 1018, 1196, 1216
HpyF10VI	GCNNNNNNNGC	5 cut(s)	187, 216, 628, 1157, 1213
HpyF3I	CTNAG	2 cut(s)	66, 288
HpySE526I	ACGT	3 cut(s)	55, 394, 976
Hsp92II	CATG	3 cut(s)	194, 524, 914
HspAI	GCGC	1 cut(s)	643
KflI	GGGWCCC	1 cut(s)	267
KpnI	GGTACC	1 cut(s)	335
Kzo9I	GATC	2 cut(s)	8, 116
Lsp1109I	GCAGC	2 cut(s)	439, 657
LweI	GCATC	1 cut(s)	1225
MaeI	CTAG	3 cut(s)	21, 846, 1076
MaeII	ACGT	3 cut(s)	55, 394, 976
MaeIII	GTNAC	5 cut(s)	87, 196, 204, 722, 943
MalI	GATC	2 cut(s)	10, 118
MbiI	CCGCTC	1 cut(s)	1135
MboI	GATC	2 cut(s)	8, 116
MflI	RGATCY	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	1223
MluCI	AATT	3 cut(s)	434, 470, 581
MluNI	TGGCCA	1 cut(s)	1223
MlyI	GAGTC	2 cut(s)	806, 895
MmeI	TCCRAC	1 cut(s)	675
Mox20I	TGGCCA	1 cut(s)	1223
Mph1103I	ATGCAT	1 cut(s)	1218
MscI	TGGCCA	1 cut(s)	1223
MseI	TTAA	1 cut(s)	255
Msp20I	TGGCCA	1 cut(s)	1223
MspI	CCGG	2 cut(s)	165, 714
MspR9I	CCNGG	2 cut(s)	166, 614
MvaI	CCWGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	5 cut(s)	187, 216, 628, 1157, 1213
NciI	CCSGG	1 cut(s)	166
NdeI	CATATG	1 cut(s)	1212
NdeII	GATC	2 cut(s)	8, 116
NlaIII	CATG	3 cut(s)	194, 524, 914
NlaIV	GGNNCC	4 cut(s)	268, 269, 333, 405
NmuCI	GTSAC	5 cut(s)	87, 196, 204, 722, 943
NsiI	ATGCAT	1 cut(s)	1218
NspI	RCATGY	1 cut(s)	194
NspV	TTCGAA	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	605
PfeI	GAWTC	3 cut(s)	226, 446, 1106
PflFI	GACNNNGTC	3 cut(s)	40, 76, 202
PflMI	CCANNNNNTGG	2 cut(s)	750, 911
PfoI	TCCNGGA	1 cut(s)	612
PkrI	GCNGC	4 cut(s)	189, 361, 454, 647
PleI	GAGTC	2 cut(s)	805, 895
PpsI	GAGTC	2 cut(s)	805, 895
PpuMI	RGGWCCY	1 cut(s)	267
Psp1406I	AACGTT	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	4 cut(s)	268, 269, 333, 405
PspPI	GGNCC	3 cut(s)	267, 419, 741
PspPPI	RGGWCCY	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	116
PsyI	GACNNNGTC	3 cut(s)	40, 76, 202
RsaI	GTAC	2 cut(s)	333, 497
RsaNI	GTAC	2 cut(s)	332, 496
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	4 cut(s)	188, 360, 453, 646
Sau3AI	GATC	2 cut(s)	8, 116
Sau96I	GGNCC	3 cut(s)	267, 419, 741
SchI	GAGTC	2 cut(s)	806, 895
ScrFI	CCNGG	2 cut(s)	166, 614
SfaNI	GCATC	1 cut(s)	1225
SfuI	TTCGAA	1 cut(s)	59
SinI	GGWCC	2 cut(s)	267, 419
SmlI	CTYRAG	1 cut(s)	1236
SmoI	CTYRAG	1 cut(s)	1236
SphI	GCATGC	1 cut(s)	194
Sse9I	AATT	3 cut(s)	434, 470, 581
SseBI	AGGCCT	1 cut(s)	605
SsiI	CCGC	7 cut(s)	5, 187, 194, 359, 595, 925, 1135
SspI	AATATT	1 cut(s)	1026
SspMI	CTAG	3 cut(s)	21, 846, 1076
StuI	AGGCCT	1 cut(s)	605
StyD4I	CCNGG	2 cut(s)	164, 612
StyI	CCWWGG	1 cut(s)	1224
TaaI	ACNGT	2 cut(s)	1003, 1245
TaiI	ACGT	3 cut(s)	58, 397, 979
TaqI	TCGA	4 cut(s)	29, 44, 59, 1109
TasI	AATT	3 cut(s)	434, 470, 581
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	2 cut(s)	190, 362
TfiI	GAWTC	3 cut(s)	226, 446, 1106
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseFI	GTSAC	5 cut(s)	87, 196, 204, 722, 943
TseI	GCWGC	2 cut(s)	452, 645
Tsp45I	GTSAC	5 cut(s)	87, 196, 204, 722, 943
TspDTI	ATGAA	4 cut(s)	93, 384, 537, 547
Tth111I	GACNNNGTC	3 cut(s)	40, 76, 202
Van91I	CCANNNNNTGG	2 cut(s)	750, 911
VpaK11BI	GGWCC	2 cut(s)	267, 419
XapI	RAATTY	1 cut(s)	581
XceI	RCATGY	1 cut(s)	194
XspI	CTAG	3 cut(s)	21, 846, 1076
Zsp2I	ATGCAT	1 cut(s)	1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.