AT5G61780

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004359
Physical Location & Seq
Forward (+)
24821203 .. 24826969
5767 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61780.1

Sequence Viewer

Length: 2958 bp
ATGGCGACTGGGGCAGCAACTGAGAACCAGTGGCTCAAAGGGAGAGTGAAGGCTGTTACCTCCGGAGACTGCTTGGTGATCACGGCTTTGACCCACAACAGAGCTGGCCCACCTCCGGAAAAGACCATCACTCTTTCTTCTCTTATGGCTCCTAAGATGGCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAGGGAGTTTCTAAGGAAGCTTTGCATTGGAAAGGAGGTTGCTTTCAAAGTGGATTACAAAGTGGAAGCAATTGCCGGAAGAGAATTTGGCTCTGTTTACCTTGGTAACGAAAATCTTGCGAAGCTTGTTGTTCAAAATGGCTGGGCAAAGGTCAGACGGCCAGGTCAGCAGAATCAGGATAAGGTTAGTCCTTACATTGCGGAGCTGGAACAGCTTGAAGAGCAGGCTCAGCAGGAAGGATTTGGTCGTTGGAGCAAGGTTCCTGGTGCTGCTGAGGCATCTATCAGAAATCTTCCTCCTTCTGCCGTTGGAGATTCTGGCAATTTTGATGCCATGGGTCTTTTAGCCGCAAGTAAAGGCAAACCCATGGAAGGTATTGTTGAGCAAGTCCGTGATGGCAGCACCATTCGGGTTTATCTTCTTCCGGAATTTCAGTTTGTTCAAGTATTTGTTGCTGGACTCCAGGCTCCATCGATGGGAAGGAGACAATCAACACAAGAAGCTGTCGTTGATCCTGATGTTACAGCAACTTCGAATGGAGATGCTTCTGCTGAGACGCGTGGCCCTCTAACAACAGCTCAGAGACTTGCTGCCTCAGCAGCATCGTCTGTTGAGGTTTCCTCTGATCCGTTTGCAATGGAAGCCAAGTACTTTACTGAGCTTCGTGTGCTTAATAGAGATGTTCGTATTGTTCTTGAAGGCGTTGACAAGTTCAACAATCTGATTGGGTCAGTATACTATTCCGATGGGGATACAGTTAAAGACTTGGGTTTGGAGCTGGTTGAAAATGGTCTTGCTAAGTACGTTGAGTGGAGTGCCAACATGTTGGATGAAGAAGCCAAAAAGAAATTGAAAGCTACAGAACTTCAATGCAAGAAAAACCGGGTGAAAATGTGGGCAAACTACGTCCCTCCAGCTAGCAACTCCAAGGCAATTCATGACCAGAATTTTACCGGAAAGGTAGTGGAAGTTGTGAGCGGGGACTGCTTAGTAGTTGCTGATGATTCTATCCCATTCGGGAGCCCAATGGCGGAGCGCAGAGTTTGTCTTTCCAGTATCAGGTCTCCTAAAATGGGTAACCCACGCAGAGAGGAGAAACCTGCCCCTTATGCGCGCGAAGCCAAGGAGTTTCTGAGACAAAAGCTTATCGGAATGGAGGTTATTGTTCAAATGGAATACTCAAGGAAGATTAGCCCAGGAGATGGTGTTACTACTTCTGGAGCTGGTGATAGGGTCATGGATTTCGGCTCAGTGTTCCTTCCATCTCCTACCAAGGGTGATACAGCTGTAGCAGCTGCAGCAACTCCTGGAGCGAATATTGCTGAACTCATTATTTCCCGTGGCTTAGGGACTGTGGTTCGACATCGTGACTTTGAAGAGAGGTCGAACCATTATGACGCTCTCCTGGCTGCTGAAGCTCGTGCTATTGCTGGGAAGAAGAATATCCATTCTGCAAAGGATTCTCCAGCCCTACACATTGCAGACCTGACTGTGGCCTCGGCCAAGAAGGCTAAAGATTTCCTGCCATCCCTGCAGAGAATCAACCAGATATCTGCCGTTGTGGAATATGTGCTAAGTGGACATCGGTTCAAGCTATACATTCCAAAAGAATCGTGCAGCATTGCCTTTGCATTCTCTGGTGTCAGATGTCCTGGCCGTGGCGAACCCTATTCGGAAGAAGCTATTGCTTTAATGAGACGTAAGATCATGCAGAGAGATGTCGAGATTGTAGTTGAAAATGTGGATAGAACCGGTACTTTCTTGGGATCAATGTGGGAGAAAAACTCAAAGACGAACGCAGGAACATATCTTCTTGAAGCTGGCCTGGCAAAAATGCAGACTGGCTTTGGTGCAGACAGGATTCCCGAAGCTCATATTCTTGAAATGGCAGAACGATCTGCTAAAAATCAGAAACTGAAGATTTGGGAAAACTATGTTGAAGGAGAGGAAGTAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAACACTAAAGGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTTGGCGATCAAAAAGTAGCTTCGATTCAAAACCAGCTTGCAGCTCTGAGTCTTAAAGACGCTCCCATTATTGGATCGTTTAATCCTAAGAAGGGTGACATCGTCCTTGCACAATTTAGCCTCGATAACTCCTGGAACCGCGCAATGATTGTTAATGGACCTCGAGGAGCAGTTCAATCTCCAGAGGAGGAATTTGAAGTGTTCTACATCGATTATGGAAACCAAGAAATAGTTCCGTACAGCGCAATACGCCCTGTGGACCCTTCAGTATCCTCAGCACCAGGGCTAGCACAGCTCTGCAGACTTGCCTACATAAAAGTTCCAGGCAAGGAAGAGGACTTTGGTCGTGACGCCGGAGAGTATTTGCATACCGTAACACTCGAAAGTGGTAAAGAGTTCAGGGCAGTGGTAGAGGAAAGAGATACTTCAGGAGGCAAAGTGAAGGGCCAAGGAACTGGAACTGAGCTCGTTGTAACTCTCATCGCTGTCGATGATGAGATCTCTGTCAATGCAGCAATGCTTCAGGAAGGAATAGCCAGGATGGAGAAACGCAGGAGATGGGAACCGAAAGACAAGCAAGCCGCTCTTGATGCTCTTGAGAAGTTCCAAGACGAAGCTCGCAAATCTAGGACCGGAATCTGGGAGTACGGAGATATCCAATCTGATGATGAGGACAATGTTCCAGTCAGGAAACCGGGTCGCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010371 GO:0010372 GO:0010467 GO:0010468 GO:0010494 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016070 GO:0016071 GO:0016101 GO:0016102 GO:0016114 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019439 GO:0019747 GO:0019752 GO:0030054 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046394 GO:0046483 GO:0046686 GO:0046700 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05169 ko05203 map05169 map05203
Pfam Domains
Protein Families
SNase TUDOR

Protein Analysis

985

Amino Acids

107.74

Weight (kDa)

6.2

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNase PF00565 42 - 153 2.9e-12 Staphylococcal nuclease homologue
SNase PF00565 274 - 368 1.4e-12 Staphylococcal nuclease homologue
SNase PF00565 612 - 711 5e-12 Staphylococcal nuclease homologue
TUDOR PF00567 730 - 853 4.4e-21 Tudor domain
SNase PF00565 852 - 965 1.7e-07 Staphylococcal nuclease homologue
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 363
AbsI CCTCGAGG 1 cut(s) 2412
Acc36I ACCTGC 1 cut(s) 1309
AccB7I CCANNNNNTGG 1 cut(s) 1403
AccBSI CCGCTC 2 cut(s) 1179, 2834
AccI GTMKAC 1 cut(s) 936
AccII CGCG 5 cut(s) 760, 1315, 1317, 2391, 2952
AccIII TCCGGA 3 cut(s) 62, 115, 625
AciI CCGC 8 cut(s) 401, 549, 1179, 1232, 2229, 2389, 2832, 2952
AclWI GGATC 4 cut(s) 707, 821, 1975, 2332
AcoI YGGCCR 3 cut(s) 359, 1701, 1855
AcsI RAATTY 4 cut(s) 284, 629, 1147, 2441
AcuI CTGAAG 5 cut(s) 1635, 2138, 2499, 2661, 2756
AcyI GRCGYC 1 cut(s) 2601
AfaI GTAC 6 cut(s) 851, 1004, 1957, 2220, 2489, 2897
AflIII ACRYGT 2 cut(s) 758, 1023
AgeI ACCGGT 1 cut(s) 1952
AjuI GAANNNNNNNTTGG 4 cut(s) 2466, 2498, 2574, 2606
Alw21I GWGCWC 1 cut(s) 2718
Alw26I GTCTC 7 cut(s) 60, 679, 749, 778, 1269, 1330, 1891
AlwI GGATC 4 cut(s) 707, 821, 1975, 2332
AlwNI CAGNNNCTG 2 cut(s) 20, 2116
Ama87I CYCGRG 1 cut(s) 2412
Aor13HI TCCGGA 3 cut(s) 62, 115, 625
AoxI GGCC 8 cut(s) 106, 359, 763, 1695, 1701, 1855, 2023, 2695
ApoI RAATTY 4 cut(s) 284, 629, 1147, 2441
AsiGI ACCGGT 1 cut(s) 1952
Asp700I GAANNNNTTC 1 cut(s) 2481
AspLEI GCGC 5 cut(s) 1239, 1315, 1317, 2393, 2495
AspS9I GGNCC 6 cut(s) 107, 764, 2408, 2509, 2695, 2880
AsuC2I CCSGG 2 cut(s) 1085, 2946
AsuHPI GGTGA 5 cut(s) 88, 1099, 1439, 1490, 2357
AsuII TTCGAA 1 cut(s) 734
AsuNHI GCTAGC 2 cut(s) 1118, 2536
AvaI CYCGRG 1 cut(s) 2412
AvaII GGWCC 3 cut(s) 2408, 2509, 2880
BaeI ACNNNNGTAYC 2 cut(s) 1473, 1506
BanII GRGCYC 2 cut(s) 1226, 2718
BauI CACGAG 1 cut(s) 1620
Bbv12I GWGCWC 1 cut(s) 2718
BbvCI CCTCAGC 3 cut(s) 474, 796, 2524
BceAI ACGGC 5 cut(s) 99, 374, 491, 1742, 1842
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciVI GTATCC 2 cut(s) 946, 2530
BclI TGATCA 1 cut(s) 78
BcnI CCSGG 2 cut(s) 1085, 2946
BcoDI GTCTC 7 cut(s) 60, 679, 749, 778, 1269, 1330, 1891
BfaI CTAG 3 cut(s) 1119, 2537, 2877
BfmI CTRYAG 5 cut(s) 1059, 1488, 1497, 1733, 2548
BfuAI ACCTGC 1 cut(s) 1309
BfuI GTATCC 2 cut(s) 946, 2530
BglI GCCNNNNNGGC 1 cut(s) 1709
BglII AGATCT 1 cut(s) 2748
BlpI GCTNAGC 1 cut(s) 429
BmcAI AGTACT 2 cut(s) 851, 2220
Bme18I GGWCC 3 cut(s) 2408, 2509, 2880
BmeT110I CYCGRG 1 cut(s) 2412
BmgT120I GGNCC 6 cut(s) 107, 764, 2408, 2509, 2695, 2880
BmiI GGNNCC 7 cut(s) 150, 462, 669, 1223, 2387, 2511, 2814
BmrI ACTGGG 1 cut(s) 18
BmsI GCATC 5 cut(s) 488, 520, 733, 812, 2830
BmtI GCTAGC 2 cut(s) 1122, 2540
BmuI ACTGGG 1 cut(s) 18
BoxI GACNNNNGTC 1 cut(s) 2592
BplI GAGNNNNNCTC 4 cut(s) 806, 838, 1970, 2002
BpmI CTGGAG 6 cut(s) 647, 1098, 1440, 1530, 1650, 2415
Bpu10I CCTNAGC 4 cut(s) 474, 796, 1546, 2524
Bpu1102I GCTNAGC 1 cut(s) 429
Bpu14I TTCGAA 1 cut(s) 734
BpuEI CTTGAG 2 cut(s) 1366, 2867
BpuMI CCSGG 2 cut(s) 1085, 2946
Bsa29I ATCGAT 2 cut(s) 674, 2460
BsaHI GRCGYC 1 cut(s) 2601
BsaI GGTCTC 1 cut(s) 1269
BsaWI WCCGGW 6 cut(s) 62, 115, 625, 1154, 1952, 2882
BsaXI ACNNNNNCTCC 6 cut(s) 1392, 1422, 2136, 2166, 2673, 2703
Bse118I RCCGGY 1 cut(s) 1952
Bse1I ACTGG 6 cut(s) 13, 28, 1254, 2047, 2710, 2933
Bse3DI GCAATG 6 cut(s) 396, 843, 1677, 1821, 2400, 2772
BseAI TCCGGA 3 cut(s) 62, 115, 625
BseCI ATCGAT 2 cut(s) 674, 2460
BseGI GGATG 3 cut(s) 1036, 1727, 2796
BseMI GCAATG 6 cut(s) 396, 843, 1677, 1821, 2400, 2772
BseNI ACTGG 6 cut(s) 13, 28, 1254, 2047, 2710, 2933
BsePI GCGCGC 1 cut(s) 1313
BseRI GAGGAG 4 cut(s) 183, 1307, 2430, 2450
BseYI CCCAGC 2 cut(s) 342, 1631
BsgI GTGCAG 2 cut(s) 1837, 2073
Bsh1236I CGCG 5 cut(s) 760, 1315, 1317, 2391, 2952
Bsh1285I CGRYCG 1 cut(s) 2233
BshFI GGCC 8 cut(s) 108, 361, 765, 1697, 1703, 1857, 2025, 2697
BshTI ACCGGT 1 cut(s) 1952
BshVI ATCGAT 2 cut(s) 674, 2460
BsiEI CGRYCG 1 cut(s) 2233
BsiHKAI GWGCWC 1 cut(s) 2718
BsiHKCI CYCGRG 1 cut(s) 2412
BslFI GGGAC 3 cut(s) 1094, 1196, 1564
BsmAI GTCTC 7 cut(s) 60, 679, 749, 778, 1269, 1330, 1891
BsmBI CGTCTC 2 cut(s) 749, 1891
BsmFI GGGAC 3 cut(s) 1094, 1196, 1564
BsmI GAATGC 1 cut(s) 1832
BsnI GGCC 8 cut(s) 108, 361, 765, 1697, 1703, 1857, 2025, 2697
Bso31I GGTCTC 1 cut(s) 1269
BsoBI CYCGRG 1 cut(s) 2412
Bsp119I TTCGAA 1 cut(s) 734
Bsp1286I GDGCHC 2 cut(s) 1226, 2718
Bsp13I TCCGGA 3 cut(s) 62, 115, 625
Bsp143I GATC 9 cut(s) 78, 712, 826, 1905, 1967, 2096, 2257, 2324, 2748
Bsp1720I GCTNAGC 1 cut(s) 429
Bsp19I CCATGG 2 cut(s) 534, 567
BspACI CCGC 8 cut(s) 401, 549, 1179, 1232, 2229, 2389, 2832, 2952
BspANI GGCC 8 cut(s) 108, 361, 765, 1697, 1703, 1857, 2025, 2697
BspDI ATCGAT 2 cut(s) 674, 2460
BspEI TCCGGA 3 cut(s) 62, 115, 625
BspFNI CGCG 5 cut(s) 760, 1315, 1317, 2391, 2952
BspHI TCATGA 1 cut(s) 1138
BspLI GGNNCC 7 cut(s) 150, 462, 669, 1223, 2387, 2511, 2814
BspMAI CTGCAG 3 cut(s) 1501, 1737, 2552
BspMI ACCTGC 1 cut(s) 1309
BspOI GCTAGC 2 cut(s) 1122, 2540
BspPI GGATC 4 cut(s) 707, 821, 1975, 2332
BspQI GCTCTTC 1 cut(s) 414
BspT104I TTCGAA 1 cut(s) 734
BspTNI GGTCTC 1 cut(s) 1269
BsrBI CCGCTC 2 cut(s) 1179, 2834
BsrDI GCAATG 6 cut(s) 396, 843, 1677, 1821, 2400, 2772
BsrFI RCCGGY 1 cut(s) 1952
BsrI ACTGG 6 cut(s) 13, 28, 1254, 2047, 2710, 2933
BssAI RCCGGY 1 cut(s) 1952
BssHII GCGCGC 1 cut(s) 1313
BssMI GATC 9 cut(s) 78, 712, 826, 1905, 1967, 2096, 2257, 2324, 2748
BssNAI GTATAC 1 cut(s) 937
BssNI GRCGYC 1 cut(s) 2601
BssSI CACGAG 1 cut(s) 1620
BssT1I CCWWGG 7 cut(s) 301, 534, 567, 1128, 1323, 1473, 2698
Bst1107I GTATAC 1 cut(s) 937
Bst2BI CACGAG 1 cut(s) 1620
Bst4CI ACNGT 6 cut(s) 958, 1555, 1693, 2162, 2251, 2623
Bst6I CTCTTC 4 cut(s) 274, 414, 1572, 2577
BstACI GRCGYC 1 cut(s) 2601
BstBI TTCGAA 1 cut(s) 734
BstDSI CCRYGG 4 cut(s) 534, 567, 1540, 1858
BstEII GGTNACC 1 cut(s) 1277
BstF5I GGATG 3 cut(s) 1036, 1727, 2796
BstFNI CGCG 5 cut(s) 760, 1315, 1317, 2391, 2952
BstHHI GCGC 5 cut(s) 1239, 1315, 1317, 2393, 2495
BstKTI GATC 9 cut(s) 81, 715, 829, 1908, 1970, 2099, 2260, 2327, 2751
BstMAI GTCTC 7 cut(s) 60, 679, 749, 778, 1269, 1330, 1891
BstMBI GATC 9 cut(s) 78, 712, 826, 1905, 1967, 2096, 2257, 2324, 2748
BstMCI CGRYCG 1 cut(s) 2233
BstNSI RCATGY 1 cut(s) 1027
BstPAI GACNNNNGTC 1 cut(s) 2592
BstPI GGTNACC 1 cut(s) 1277
BstSFI CTRYAG 5 cut(s) 1059, 1488, 1497, 1733, 2548
BstUI CGCG 5 cut(s) 760, 1315, 1317, 2391, 2952
BstX2I RGATCY 1 cut(s) 2748
BstXI CCANNNNNNTGG 2 cut(s) 1027, 2705
BstYI RGATCY 1 cut(s) 2748
BstZ17I GTATAC 1 cut(s) 937
Bsu15I ATCGAT 2 cut(s) 674, 2460
BsuI GTATCC 2 cut(s) 946, 2530
BsuRI GGCC 8 cut(s) 108, 361, 765, 1697, 1703, 1857, 2025, 2697
BsuTUI ATCGAT 2 cut(s) 674, 2460
BtgI CCRYGG 4 cut(s) 534, 567, 1540, 1858
BtgZI GCGATG 1 cut(s) 2716
BtsCI GGATG 3 cut(s) 1036, 1727, 2796
BtsI GCAGTG 1 cut(s) 2661
BtsIMutI CAGTG 3 cut(s) 35, 1458, 2661
BveI ACCTGC 1 cut(s) 1309
CaiI CAGNNNCTG 2 cut(s) 20, 2116
CciI TCATGA 1 cut(s) 1138
CfoI GCGC 5 cut(s) 1239, 1315, 1317, 2393, 2495
Cfr10I RCCGGY 1 cut(s) 1952
Cfr13I GGNCC 6 cut(s) 107, 764, 2408, 2509, 2695, 2880
ClaI ATCGAT 2 cut(s) 674, 2460
CseI GACGC 4 cut(s) 766, 1607, 2318, 2609
Csp6I GTAC 6 cut(s) 850, 1003, 1956, 2219, 2488, 2896
CspAI ACCGGT 1 cut(s) 1952
CviAII CATG 7 cut(s) 192, 535, 568, 1024, 1139, 1438, 1909
CviQI GTAC 6 cut(s) 850, 1003, 1956, 2219, 2488, 2896
DpnI GATC 9 cut(s) 80, 714, 828, 1907, 1969, 2098, 2259, 2326, 2750
DpnII GATC 9 cut(s) 78, 712, 826, 1905, 1967, 2096, 2257, 2324, 2748
DrdI GACNNNNNNGTC 1 cut(s) 363
DseDI GACNNNNNNGTC 1 cut(s) 363
EaeI YGGCCR 3 cut(s) 359, 1701, 1855
Eam1104I CTCTTC 4 cut(s) 274, 414, 1572, 2577
EarI CTCTTC 4 cut(s) 274, 414, 1572, 2577
EciI GGCGGA 1 cut(s) 1247
Ecl136II GAGCTC 1 cut(s) 2716
Eco130I CCWWGG 7 cut(s) 301, 534, 567, 1128, 1323, 1473, 2698
Eco24I GRGCYC 2 cut(s) 1226, 2718
Eco31I GGTCTC 1 cut(s) 1269
Eco32I GATATC 2 cut(s) 1752, 2905
Eco47I GGWCC 3 cut(s) 2408, 2509, 2880
Eco53kI GAGCTC 1 cut(s) 2716
Eco57I CTGAAG 5 cut(s) 1635, 2138, 2499, 2661, 2756
Eco88I CYCGRG 1 cut(s) 2412
Eco91I GGTNACC 1 cut(s) 1277
EcoICRI GAGCTC 1 cut(s) 2716
EcoO65I GGTNACC 1 cut(s) 1277
EcoRV GATATC 2 cut(s) 1752, 2905
EcoT14I CCWWGG 7 cut(s) 301, 534, 567, 1128, 1323, 1473, 2698
EcoT38I GRGCYC 2 cut(s) 1226, 2718
ErhI CCWWGG 7 cut(s) 301, 534, 567, 1128, 1323, 1473, 2698
Esp3I CGTCTC 2 cut(s) 749, 1891
FaeI CATG 7 cut(s) 195, 538, 571, 1027, 1142, 1441, 1912
FalI AAGNNNNNCTT 4 cut(s) 2659, 2691, 2820, 2852
FaqI GGGAC 3 cut(s) 1094, 1196, 1564
FatI CATG 7 cut(s) 191, 534, 567, 1023, 1138, 1437, 1908
FauI CCCGC 2 cut(s) 1172, 2945
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 1 cut(s) 936
FokI GGATG 3 cut(s) 1043, 1714, 2803
FriOI GRGCYC 2 cut(s) 1226, 2718
FspBI CTAG 3 cut(s) 1119, 2537, 2877
GlaI GCGC 5 cut(s) 1238, 1314, 1316, 2392, 2494
GsaI CCCAGC 2 cut(s) 346, 1635
GsuI CTGGAG 6 cut(s) 647, 1098, 1440, 1530, 1650, 2415
HaeIII GGCC 8 cut(s) 108, 361, 765, 1697, 1703, 1857, 2025, 2697
HgaI GACGC 4 cut(s) 766, 1607, 2318, 2609
HhaI GCGC 5 cut(s) 1239, 1315, 1317, 2393, 2495
Hin1I GRCGYC 1 cut(s) 2601
Hin1II CATG 7 cut(s) 195, 538, 571, 1027, 1142, 1441, 1912
Hin6I GCGC 5 cut(s) 1237, 1313, 1315, 2391, 2493
HinP1I GCGC 5 cut(s) 1237, 1313, 1315, 2391, 2493
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HindIII AAGCTT 3 cut(s) 218, 323, 1343
HphI GGTGA 5 cut(s) 88, 1099, 1439, 1490, 2357
Hpy166II GTNNAC 6 cut(s) 298, 907, 937, 1781, 2158, 2509
Hpy8I GTNNAC 6 cut(s) 298, 907, 937, 1781, 2158, 2509
HpyCH4III ACNGT 6 cut(s) 958, 1555, 1693, 2162, 2251, 2623
HpyCH4IV ACGT 3 cut(s) 1005, 1107, 1900
HpySE526I ACGT 3 cut(s) 1005, 1107, 1900
Hsp92I GRCGYC 1 cut(s) 2601
Hsp92II CATG 7 cut(s) 195, 538, 571, 1027, 1142, 1441, 1912
HspAI GCGC 5 cut(s) 1237, 1313, 1315, 2391, 2493
Kpn2I TCCGGA 3 cut(s) 62, 115, 625
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 9 cut(s) 78, 712, 826, 1905, 1967, 2096, 2257, 2324, 2748
LguI GCTCTTC 1 cut(s) 414
LweI GCATC 5 cut(s) 488, 520, 733, 812, 2830
MaeI CTAG 3 cut(s) 1119, 2537, 2877
MaeII ACGT 3 cut(s) 1005, 1107, 1900
MalI GATC 9 cut(s) 80, 714, 828, 1907, 1969, 2098, 2259, 2326, 2750
MbiI CCGCTC 2 cut(s) 1179, 2834
MboI GATC 9 cut(s) 78, 712, 826, 1905, 1967, 2096, 2257, 2324, 2748
MfeI CAATTG 1 cut(s) 270
MflI RGATCY 1 cut(s) 2748
MhlI GDGCHC 2 cut(s) 1226, 2718
MluCI AATT 9 cut(s) 270, 284, 523, 629, 1049, 1134, 1147, 2363, 2441
MluI ACGCGT 1 cut(s) 758
MlyI GAGTC 2 cut(s) 654, 2308
MmeI TCCRAC 3 cut(s) 431, 490, 1008
MroI TCCGGA 3 cut(s) 62, 115, 625
MroXI GAANNNNTTC 1 cut(s) 2481
MseI TTAA 6 cut(s) 873, 960, 1892, 2304, 2331, 2403
MspA1I CMGCKG 2 cut(s) 1487, 1496
MunI CAATTG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 1832
MvnI CGCG 5 cut(s) 760, 1315, 1317, 2391, 2952
NciI CCSGG 2 cut(s) 1085, 2946
NcoI CCATGG 2 cut(s) 534, 567
NdeII GATC 9 cut(s) 78, 712, 826, 1905, 1967, 2096, 2257, 2324, 2748
NheI GCTAGC 2 cut(s) 1118, 2536
NlaIII CATG 7 cut(s) 195, 538, 571, 1027, 1142, 1441, 1912
NlaIV GGNNCC 7 cut(s) 150, 462, 669, 1223, 2387, 2511, 2814
NmeAIII GCCGAG 1 cut(s) 1679
NmuCI GTSAC 3 cut(s) 1568, 2345, 2597
NspI RCATGY 1 cut(s) 1027
NspV TTCGAA 1 cut(s) 734
PaeR7I CTCGAG 1 cut(s) 2412
PagI TCATGA 1 cut(s) 1138
PauI GCGCGC 1 cut(s) 1313
PciI ACATGT 1 cut(s) 1023
PciSI GCTCTTC 1 cut(s) 414
PctI GAATGC 1 cut(s) 1832
PdmI GAANNNNTTC 1 cut(s) 2481
PfeI GAWTC 9 cut(s) 373, 515, 1205, 1661, 1740, 1811, 2062, 2275, 2886
PflFI GACNNNGTC 1 cut(s) 2351
PflMI CCANNNNNTGG 1 cut(s) 1403
PfoI TCCNGGA 2 cut(s) 1507, 2381
PinAI ACCGGT 1 cut(s) 1952
PleI GAGTC 2 cut(s) 654, 2307
PpsI GAGTC 2 cut(s) 654, 2307
PscI ACATGT 1 cut(s) 1023
PshAI GACNNNNGTC 1 cut(s) 2592
Psp124BI GAGCTC 1 cut(s) 2718
PspEI GGTNACC 1 cut(s) 1277
PspFI CCCAGC 2 cut(s) 342, 1631
PspN4I GGNNCC 7 cut(s) 150, 462, 669, 1223, 2387, 2511, 2814
PspPI GGNCC 6 cut(s) 107, 764, 2408, 2509, 2695, 2880
PspXI VCTCGAGB 1 cut(s) 2412
PstI CTGCAG 3 cut(s) 1501, 1737, 2552
PstNI CAGNNNCTG 2 cut(s) 20, 2116
PsuI RGATCY 1 cut(s) 2748
PsyI GACNNNGTC 1 cut(s) 2351
PteI GCGCGC 1 cut(s) 1313
PvuII CAGCTG 2 cut(s) 1487, 1496
RsaI GTAC 6 cut(s) 851, 1004, 1957, 2220, 2489, 2897
RsaNI GTAC 6 cut(s) 850, 1003, 1956, 2219, 2488, 2896
SacI GAGCTC 1 cut(s) 2718
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 6 cut(s) 873, 960, 1892, 2304, 2331, 2403
Sau3AI GATC 9 cut(s) 78, 712, 826, 1905, 1967, 2096, 2257, 2324, 2748
Sau96I GGNCC 6 cut(s) 107, 764, 2408, 2509, 2695, 2880
ScaI AGTACT 2 cut(s) 851, 2220
SchI GAGTC 2 cut(s) 654, 2308
SduI GDGCHC 2 cut(s) 1226, 2718
SfaNI GCATC 5 cut(s) 488, 520, 733, 812, 2830
SfcI CTRYAG 5 cut(s) 1059, 1488, 1497, 1733, 2548
Sfr274I CTCGAG 1 cut(s) 2412
SfuI TTCGAA 1 cut(s) 734
SinI GGWCC 3 cut(s) 2408, 2509, 2880
SlaI CTCGAG 1 cut(s) 2412
SmlI CTYRAG 3 cut(s) 1381, 2412, 2846
SmoI CTYRAG 3 cut(s) 1381, 2412, 2846
Sse9I AATT 9 cut(s) 270, 284, 523, 629, 1049, 1134, 1147, 2363, 2441
SsiI CCGC 8 cut(s) 401, 549, 1179, 1232, 2229, 2389, 2832, 2952
SspI AATATT 1 cut(s) 1519
SspMI CTAG 3 cut(s) 1119, 2537, 2877
SstI GAGCTC 1 cut(s) 2718
StyI CCWWGG 7 cut(s) 301, 534, 567, 1128, 1323, 1473, 2698
TaaI ACNGT 6 cut(s) 958, 1555, 1693, 2162, 2251, 2623
TaiI ACGT 3 cut(s) 1008, 1110, 1903
TasI AATT 9 cut(s) 270, 284, 523, 629, 1049, 1134, 1147, 2363, 2441
TatI WGTACW 2 cut(s) 849, 2218
TauI GCSGC 2 cut(s) 551, 2834
TfiI GAWTC 9 cut(s) 373, 515, 1205, 1661, 1740, 1811, 2062, 2275, 2886
Tru1I TTAA 6 cut(s) 873, 960, 1892, 2304, 2331, 2403
Tru9I TTAA 6 cut(s) 873, 960, 1892, 2304, 2331, 2403
TscAI CASTG 3 cut(s) 35, 1458, 2661
TseFI GTSAC 3 cut(s) 1568, 2345, 2597
Tsp45I GTSAC 3 cut(s) 1568, 2345, 2597
TspDTI ATGAA 2 cut(s) 1047, 1127
TspGWI ACGGA 5 cut(s) 581, 819, 2228, 2475, 2913
TspRI CASTG 3 cut(s) 35, 1458, 2661
Tth111I GACNNNGTC 1 cut(s) 2351
Van91I CCANNNNNTGG 1 cut(s) 1403
VpaK11BI GGWCC 3 cut(s) 2408, 2509, 2880
XapI RAATTY 4 cut(s) 284, 629, 1147, 2441
XceI RCATGY 1 cut(s) 1027
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XhoI CTCGAG 1 cut(s) 2412
XmiI GTMKAC 1 cut(s) 936
XmnI GAANNNNTTC 1 cut(s) 2481
XspI CTAG 3 cut(s) 1119, 2537, 2877
ZrmI AGTACT 2 cut(s) 851, 2220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.