Rroxscaffold_7G00170450

Staphylococcal nuclease domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004359
Physical Location & Seq
Forward (+)
10912726 .. 10916117
3392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170450.1

Sequence Viewer

Length: 2709 bp
ATGGCCCTCAACCCAAACAAGACCGGAATCCCACTAGAAAAAACCATCACTCTGTCCTCACTTATGGCGCCCAGGCTGGCCCGAAGAGATGGCGTTGATGAGCCCTTTGCATGGTACAGTAGAGAGTTTCTGAGGCAGCTCTGCTTAGGAGAGGAGGTTGTCTTCAAGGTGGACGATGTTATAAAATCCGTAGGCCGGGATTTCGGTTCTGTCTTCCTTACCAAGAGCAACGATAATGTCGCAAAGCTTGTTGTTTCTCAAGGCTGGGCAAAGGTCAGGGAGCCACCGAGTCAGCCAACAGGTCCGAGACAGGGCCAACAGAAACAGATAGTAAAAGTTAGTCCTTACCTTGAAGAACTTCTTAGCCTCGAAGAGAAAGCAAAGACTGAAGGTCTTGGTTGCTGGACCAAGGTTCCGGGTGCTGCTGAGGAATCTATTAGGTGTCTACCTCCCAACAACAACTTTGATGCAATGAGTCTGTTAGCAGAAAACAAGGGCCAGCCCATGGAGGCTATTGTGGAGCTAGTTCGTGATGGCAGCACAGTGGGGGTTTACTTGCTTCCGGAGTTTCAGTTTGTCCGTGTATTCGTTGCAGGAACTCAGGCCCCCTCCATGAAAAGGAGCCATGGAACAGAAGATACTGTCGCAGTTGCTGAAGCGTTTGCATTGGAATCTAAATTCTTTACAGAAGCTCGTGTGTTGAATAGGGATGTGCATATTGTTCTGCAAGGTGTTGACAAGTTCAGAAATTTGATTGGGTCAGTGTATTACCCTGATGGAGAATCCGAAAAGGACTTGGGGCTGGAGCTTGTGGAGAATGGTTATGCAAAATATGTCGAATGGAGCGCAAACCTGATGGAGGAAGAAGCAAAGAAACAGCTCAAGGCTGCAGAGCTTGAAGCTAAGAAAAGCAAGTTGAGGATGTGGACAAATTACGTACCCCCAGCTACAGGTTCAAAGCCAATTCATGACAAGAATTTCACAGGAATGGTTGTGGAGGTTGTGAGTGGGGACTGCATCATTGTGGCTGATGATTCTCTTCCATCTGGCAGTCCACTAGCAGAGAGGAGAGTCAACCTTTCTAGTATTTGGTGTCCGAAGATGCACAATCCTCGTAGAGATGAAAAGCCGGCTCCATATGCACGCGAAGCAAAGGAGTTGCTGAGGACACGCCTTATTGGTAGCCAAGTGAGTGTTCAATTGGAGTATTCTAGGAAGGTTGGCCAAGGAGATGCAATGGATTTTGGATCAGTCTTTGTGAAGGCTGTGGAGAAAGATGCAAGTGGGCAGGTTGGGGGGAATGTTGCTGAGCTCATGGTTGCACGTGGCCTTGGCACCGTTGTTAAACATCGAGATTTTGAGGAGAGATCGCACTATTATGATGCTCTTCTTGCTGCTGAGTCGCGTGCTATTGCCGGCAAGAAAGGAATACATTCTTCCAAGGAAGCCCCAGTCATGCACACAAGAGACTTGACAACTGAACCTGCCAAGAAAGCAAGCGAGTTCTTGCCATTCTTGCAGCGAAATAGGAAAATTCCTGCCATTGTGGAATATGTCCTTAGTGGTCATCGTTTTAAGCTATTTCTTCCCAAGGAAACATGCAGCATTGCCTTCTCTTTCTCAGGTGTGAGATGTCCCCATCGTGAGGAGCCCTTTTCGGATGAAGCAATTGCAGTCATGAGGCGAAGAATAATGCAGAGAGAAGTTGAGATTGAGGTGGAGAGTGTTGACAAAACTGGAACTTTCTTGGGAACTTTATGGGAATCGGGGACCAATATGTCAATTGCTCTCGTTGGAGCTGGCCTTGCAAAATATACTCCCTTTGGCAACAGCGATAGGATTCTGGATGCTCACCTTCTTGAACAAGCTCAAAAATCTGCCAAACAGCAGAAATTGAAAGTCTGGGAGAAGTATGATCAAGGACAGGAAGTTTCCAAGAAACAGAAAAAGGTGCTAAATGTTGTAGTTACAGAGATTTTGGACAGCGGTAAATTTTATGTTCAGACAACTGAGGATCAAAACACTGCCTGTATTCAGCAACAGCTTGCTTCTTTGAATCTTCAAGAATCTGATCCTGTAACCGATACTGATTTCAAGCCTAAGAAGGGAGACATTATCCTTGCTCAGTTTAGTGCAGACAATTCTTGGAACCGTGCAATGATTATCAATGCTCCTAGAGCAGCTGTAGAATCCTCTCAAGACGAGTATGAAGTTTTCTACATTGATTATGGTAATCAAGAGGTTGTCCCTTTCAGTCAGTTACGACCTCTCGACTCTTCACTTGCCACTGCACCTGGACTCGCCCAACTGTGCAGCCTTGCATATGTTAAGGTCCCAAGCTTGGAGGATAATTTTGGTGAAGAAGCAGCAGAGTTCTTGAGTGAGCAAACATTGAGCAGTTCCATAAAGTTCAGGGCCTTGATTGAGGGAAGGGATCTTTCAGAAGGAAAAGTTGTTAAAGGGCAGGGAACCGGACCAGCTCTTATGGTAACTCTTGAGGCAGGTGATGATGAGATGAGTATCAATGCTGCCATGGTTCGAGAGGGACTTGCTAGCCTGGACAAAGAGAAGAAATTTTGGAAGTCTTCCGAAACCTTGAGAGAGTTCCAGGAAGAAGCAAGGACCTATCGGCGAGGCATGTGGGAAGATGGAGATATTTATGCTCATGTGGACAGGGCTCGTCCCATTACAAAGACTGCTGGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010371 GO:0010372 GO:0010467 GO:0010468 GO:0010494 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016070 GO:0016071 GO:0016101 GO:0016102 GO:0016114 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019439 GO:0019747 GO:0019752 GO:0030054 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046394 GO:0046483 GO:0046686 GO:0046700 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05169 ko05203 map05169 map05203
Pfam Domains
Protein Families
SNase TUDOR

Protein Analysis

902

Amino Acids

100.28

Weight (kDa)

5.83

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNase PF00565 15 - 136 8.4e-07 Staphylococcal nuclease homologue
SNase PF00565 200 - 310 5.9e-14 Staphylococcal nuclease homologue
SNase PF00565 357 - 478 1.5e-06 Staphylococcal nuclease homologue
SNase PF00565 539 - 636 3.7e-14 Staphylococcal nuclease homologue
TUDOR PF00567 649 - 774 3.5e-23 Tudor domain
SNase PF00565 781 - 883 5.9e-08 Staphylococcal nuclease homologue
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
AarI CACCTGC 1 cut(s) 2492
AasI GACNNNNNNGTC 1 cut(s) 1777
Acc36I ACCTGC 3 cut(s) 1279, 1492, 2492
AccB1I GGYRCC 2 cut(s) 67, 1334
AccB7I CCANNNNNTGG 1 cut(s) 505
AccI GTMKAC 1 cut(s) 445
AccII CGCG 2 cut(s) 1146, 1405
AccIII TCCGGA 1 cut(s) 562
AciI CCGC 1 cut(s) 1986
AclWI GGATC 4 cut(s) 1255, 2022, 2066, 2442
AcoI YGGCCR 1 cut(s) 1222
AcsI RAATTY 6 cut(s) 677, 748, 976, 1533, 1991, 2573
AcuI CTGAAG 2 cut(s) 408, 675
AcvI CACGTG 1 cut(s) 1325
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 2 cut(s) 116, 939
AhdI GACNNNNNGTC 1 cut(s) 390
AjnI CCWGG 4 cut(s) 71, 2293, 2556, 2607
AjuI GAANNNNNNNTTGG 2 cut(s) 1179, 1211
Alw21I GWGCWC 1 cut(s) 1314
Alw26I GTCTC 3 cut(s) 301, 1461, 2103
AlwI GGATC 4 cut(s) 1255, 2022, 2066, 2442
AlwNI CAGNNNCTG 1 cut(s) 653
Aor13HI TCCGGA 1 cut(s) 562
ApoI RAATTY 6 cut(s) 677, 748, 976, 1533, 1991, 2573
Asp700I GAANNNNTTC 2 cut(s) 357, 1432
AspLEI GCGC 2 cut(s) 70, 848
AsuC2I CCSGG 2 cut(s) 197, 417
AsuHPI GGTGA 3 cut(s) 1844, 2369, 2516
AsuNHI GCTAGC 1 cut(s) 2552
AvaII GGWCC 6 cut(s) 302, 405, 1770, 2332, 2474, 2622
BalI TGGCCA 1 cut(s) 1224
BanI GGYRCC 2 cut(s) 67, 1334
BanII GRGCYC 4 cut(s) 105, 1314, 1653, 2680
BauI CACGAG 1 cut(s) 693
BbrPI CACGTG 1 cut(s) 1325
BbsI GAAGAC 3 cut(s) 154, 205, 2577
Bbv12I GWGCWC 1 cut(s) 1314
BbvCI CCTCAGC 2 cut(s) 426, 1163
BccI CCATC 8 cut(s) 53, 83, 527, 770, 850, 1051, 1647, 2642
BcgI CGANNNNNNTGC 2 cut(s) 1094, 1128
BciT130I CCWGG 4 cut(s) 73, 2295, 2558, 2609
BclI TGATCA 1 cut(s) 1915
BcnI CCSGG 2 cut(s) 197, 417
BcoDI GTCTC 3 cut(s) 301, 1461, 2103
BfaI CTAG 7 cut(s) 35, 524, 1058, 1083, 1212, 2175, 2553
BfmI CTRYAG 3 cut(s) 888, 948, 2184
BfoI RGCGCY 1 cut(s) 71
BfuAI ACCTGC 3 cut(s) 1279, 1492, 2492
BlpI GCTNAGC 1 cut(s) 1308
Bme1390I CCNGG 6 cut(s) 73, 197, 417, 2295, 2558, 2609
Bme18I GGWCC 6 cut(s) 302, 405, 1770, 2332, 2474, 2622
BmeRI GACNNNNNGTC 1 cut(s) 390
BmrFI CCNGG 6 cut(s) 73, 197, 417, 2295, 2558, 2609
BmrI ACTGGG 1 cut(s) 1445
BmsI GCATC 7 cut(s) 457, 1026, 1092, 1222, 1267, 1372, 1837
BmtI GCTAGC 1 cut(s) 2556
BmuI ACTGGG 1 cut(s) 1445
BpiI GAAGAC 3 cut(s) 154, 205, 2577
BpmI CTGGAG 1 cut(s) 824
Bpu10I CCTNAGC 3 cut(s) 145, 426, 1163
Bpu1102I GCTNAGC 1 cut(s) 1308
BpuEI CTTGAG 6 cut(s) 243, 866, 2181, 2398, 2516, 2617
BpuMI CCSGG 2 cut(s) 197, 417
BsaAI YACGTR 2 cut(s) 937, 1325
BsaBI GATNNNNATC 1 cut(s) 2519
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 9 cut(s) 71, 408, 504, 625, 1225, 1330, 1440, 1590, 2532
BsaWI WCCGGW 3 cut(s) 23, 562, 2471
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 557, 587
Bse118I RCCGGY 2 cut(s) 1129, 1415
Bse1I ACTGG 2 cut(s) 1451, 1741
Bse3DI GCAATG 4 cut(s) 477, 1242, 1605, 2163
Bse8I GATNNNNATC 1 cut(s) 2519
BseAI TCCGGA 1 cut(s) 562
BseBI CCWGG 4 cut(s) 73, 2295, 2558, 2609
BseDI CCNNGG 9 cut(s) 71, 408, 504, 625, 1225, 1330, 1440, 1590, 2532
BseGI GGATG 4 cut(s) 715, 927, 1666, 1852
BseJI GATNNNNATC 1 cut(s) 2519
BseMI GCAATG 4 cut(s) 477, 1242, 1605, 2163
BseMII CTCAG 9 cut(s) 122, 417, 614, 1154, 1299, 1389, 1635, 2001, 2138
BseNI ACTGG 2 cut(s) 1451, 1741
BseRI GAGGAG 4 cut(s) 167, 1081, 1376, 1661
BseYI CCCAGC 2 cut(s) 264, 943
BsgI GTGCAG 3 cut(s) 2154, 2274, 2332
Bsh1236I CGCG 2 cut(s) 1146, 1405
BshNI GGYRCC 2 cut(s) 67, 1334
BsiHKAI GWGCWC 1 cut(s) 1314
BsiSI CCGG 7 cut(s) 24, 196, 416, 563, 1130, 1416, 2472
BslFI GGGAC 7 cut(s) 1025, 1620, 1783, 2231, 2318, 2559, 2667
BsmAI GTCTC 3 cut(s) 301, 1461, 2103
BsmFI GGGAC 7 cut(s) 1025, 1620, 1783, 2231, 2318, 2559, 2667
Bsp1286I GDGCHC 4 cut(s) 105, 1314, 1653, 2680
Bsp13I TCCGGA 1 cut(s) 562
Bsp143I GATC 6 cut(s) 1247, 1367, 1915, 2014, 2071, 2434
Bsp1720I GCTNAGC 1 cut(s) 1308
Bsp19I CCATGG 3 cut(s) 504, 625, 2532
BspACI CCGC 1 cut(s) 1986
BspCNI CTCAG 9 cut(s) 123, 418, 613, 1155, 1300, 1390, 1634, 2002, 2137
BspEI TCCGGA 1 cut(s) 562
BspFNI CGCG 2 cut(s) 1146, 1405
BspHI TCATGA 2 cut(s) 967, 1677
BspMAI CTGCAG 1 cut(s) 892
BspMI ACCTGC 3 cut(s) 1279, 1492, 2492
BspOI GCTAGC 1 cut(s) 2556
BspPI GGATC 4 cut(s) 1255, 2022, 2066, 2442
BspQI GCTCTTC 1 cut(s) 1392
BspT107I GGYRCC 2 cut(s) 67, 1334
BsrDI GCAATG 4 cut(s) 477, 1242, 1605, 2163
BsrFI RCCGGY 2 cut(s) 1129, 1415
BsrI ACTGG 2 cut(s) 1451, 1741
BssAI RCCGGY 2 cut(s) 1129, 1415
BssECI CCNNGG 9 cut(s) 71, 408, 504, 625, 1225, 1330, 1440, 1590, 2532
BssMI GATC 6 cut(s) 1247, 1367, 1915, 2014, 2071, 2434
BssNI GRCGYC 1 cut(s) 68
BssSI CACGAG 1 cut(s) 693
BssT1I CCWWGG 8 cut(s) 408, 504, 625, 1225, 1330, 1440, 1590, 2532
Bst2BI CACGAG 1 cut(s) 693
Bst2UI CCWGG 4 cut(s) 73, 2295, 2558, 2609
Bst4CI ACNGT 6 cut(s) 119, 544, 643, 1339, 2153, 2310
Bst6I CTCTTC 5 cut(s) 79, 366, 1044, 1392, 2281
BstACI GRCGYC 1 cut(s) 68
BstBAI YACGTR 2 cut(s) 937, 1325
BstDSI CCRYGG 3 cut(s) 504, 625, 2532
BstENI CCTNNNNNAGG 1 cut(s) 857
BstF5I GGATG 4 cut(s) 715, 927, 1666, 1852
BstFNI CGCG 2 cut(s) 1146, 1405
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 2 cut(s) 70, 848
BstKTI GATC 6 cut(s) 1250, 1370, 1918, 2017, 2074, 2437
BstMAI GTCTC 3 cut(s) 301, 1461, 2103
BstMBI GATC 6 cut(s) 1247, 1367, 1915, 2014, 2071, 2434
BstMWI GCNNNNNNNGC 7 cut(s) 1139, 1148, 1391, 1493, 1516, 1805, 2177
BstNI CCWGG 4 cut(s) 73, 2295, 2558, 2609
BstNSI RCATGY 2 cut(s) 1602, 2641
BstSCI CCNGG 6 cut(s) 71, 195, 415, 2293, 2556, 2607
BstSFI CTRYAG 3 cut(s) 888, 948, 2184
BstSNI TACGTA 1 cut(s) 937
BstUI CGCG 2 cut(s) 1146, 1405
BstV2I GAAGAC 3 cut(s) 154, 205, 2577
BstX2I RGATCY 1 cut(s) 2434
BstYI RGATCY 1 cut(s) 2434
BtgI CCRYGG 3 cut(s) 504, 625, 2532
BtsCI GGATG 4 cut(s) 715, 927, 1666, 1852
BtsI GCAGTG 2 cut(s) 2022, 2286
BtsIMutI CAGTG 4 cut(s) 549, 768, 2022, 2286
BveI ACCTGC 3 cut(s) 1279, 1492, 2492
CaiI CAGNNNCTG 1 cut(s) 653
CciI TCATGA 2 cut(s) 967, 1677
CfoI GCGC 2 cut(s) 70, 848
Cfr10I RCCGGY 2 cut(s) 1129, 1415
Csp6I GTAC 2 cut(s) 115, 938
CviQI GTAC 2 cut(s) 115, 938
DinI GGCGCC 1 cut(s) 69
DpnI GATC 6 cut(s) 1249, 1369, 1917, 2016, 2073, 2436
DpnII GATC 6 cut(s) 1247, 1367, 1915, 2014, 2071, 2434
DrdI GACNNNNNNGTC 1 cut(s) 1777
DriI GACNNNNNGTC 1 cut(s) 390
DseDI GACNNNNNNGTC 1 cut(s) 1777
EaeI YGGCCR 1 cut(s) 1222
Eam1104I CTCTTC 5 cut(s) 79, 366, 1044, 1392, 2281
Eam1105I GACNNNNNGTC 1 cut(s) 390
EarI CTCTTC 5 cut(s) 79, 366, 1044, 1392, 2281
Ecl136II GAGCTC 1 cut(s) 1312
Eco105I TACGTA 1 cut(s) 937
Eco130I CCWWGG 8 cut(s) 408, 504, 625, 1225, 1330, 1440, 1590, 2532
Eco24I GRGCYC 4 cut(s) 105, 1314, 1653, 2680
Eco47I GGWCC 6 cut(s) 302, 405, 1770, 2332, 2474, 2622
Eco53kI GAGCTC 1 cut(s) 1312
Eco57I CTGAAG 2 cut(s) 408, 675
Eco72I CACGTG 1 cut(s) 1325
EcoICRI GAGCTC 1 cut(s) 1312
EcoNI CCTNNNNNAGG 1 cut(s) 857
EcoO109I RGGNCCY 4 cut(s) 604, 2332, 2415, 2622
EcoRII CCWGG 4 cut(s) 71, 2293, 2556, 2607
EcoT14I CCWWGG 8 cut(s) 408, 504, 625, 1225, 1330, 1440, 1590, 2532
EcoT38I GRGCYC 4 cut(s) 105, 1314, 1653, 2680
EgeI GGCGCC 1 cut(s) 69
EheI GGCGCC 1 cut(s) 69
ErhI CCWWGG 8 cut(s) 408, 504, 625, 1225, 1330, 1440, 1590, 2532
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 7 cut(s) 1025, 1620, 1783, 2231, 2318, 2559, 2667
FauNDI CATATG 2 cut(s) 1138, 2323
FbaI TGATCA 1 cut(s) 1915
FblI GTMKAC 1 cut(s) 445
FokI GGATG 4 cut(s) 722, 934, 1673, 1859
FriOI GRGCYC 4 cut(s) 105, 1314, 1653, 2680
FspBI CTAG 7 cut(s) 35, 524, 1058, 1083, 1212, 2175, 2553
GlaI GCGC 2 cut(s) 69, 847
GsaI CCCAGC 2 cut(s) 268, 947
GsuI CTGGAG 1 cut(s) 824
HaeII RGCGCY 1 cut(s) 71
HapII CCGG 7 cut(s) 24, 196, 416, 563, 1130, 1416, 2472
HhaI GCGC 2 cut(s) 70, 848
Hin1I GRCGYC 1 cut(s) 68
Hin6I GCGC 2 cut(s) 68, 846
HinP1I GCGC 2 cut(s) 68, 846
HincII GTYRAC 3 cut(s) 736, 1075, 1729
HindII GTYRAC 3 cut(s) 736, 1075, 1729
HindIII AAGCTT 2 cut(s) 245, 2338
HpaII CCGG 7 cut(s) 24, 196, 416, 563, 1130, 1416, 2472
HphI GGTGA 3 cut(s) 1844, 2369, 2516
Hpy166II GTNNAC 9 cut(s) 172, 446, 553, 736, 927, 1055, 1075, 1729, 2671
Hpy8I GTNNAC 9 cut(s) 172, 446, 553, 736, 927, 1055, 1075, 1729, 2671
HpyAV CCTTC 8 cut(s) 383, 1210, 1255, 1621, 1865, 2098, 2424, 2438
HpyCH4III ACNGT 6 cut(s) 119, 544, 643, 1339, 2153, 2310
HpyCH4IV ACGT 2 cut(s) 936, 1324
HpyF10VI GCNNNNNNNGC 7 cut(s) 1139, 1148, 1391, 1493, 1516, 1805, 2177
HpySE526I ACGT 2 cut(s) 936, 1324
Hsp92I GRCGYC 1 cut(s) 68
HspAI GCGC 2 cut(s) 68, 846
KasI GGCGCC 1 cut(s) 67
Kpn2I TCCGGA 1 cut(s) 562
KroI GCCGGC 2 cut(s) 1129, 1415
KroNI GCCGGC 2 cut(s) 1131, 1417
Ksp22I TGATCA 1 cut(s) 1915
Kzo9I GATC 6 cut(s) 1247, 1367, 1915, 2014, 2071, 2434
LguI GCTCTTC 1 cut(s) 1392
LmnI GCTCC 9 cut(s) 280, 520, 621, 805, 843, 1138, 1648, 1796, 2176
LweI GCATC 7 cut(s) 457, 1026, 1092, 1222, 1267, 1372, 1837
MaeI CTAG 7 cut(s) 35, 524, 1058, 1083, 1212, 2175, 2553
MaeII ACGT 2 cut(s) 936, 1324
MaeIII GTNAC 4 cut(s) 1966, 2077, 2259, 2488
MalI GATC 6 cut(s) 1249, 1369, 1917, 2016, 2073, 2436
MboI GATC 6 cut(s) 1247, 1367, 1915, 2014, 2071, 2434
MfeI CAATTG 3 cut(s) 1199, 1668, 1782
MflI RGATCY 1 cut(s) 2434
MhlI GDGCHC 4 cut(s) 105, 1314, 1653, 2680
MlsI TGGCCA 1 cut(s) 1224
MluNI TGGCCA 1 cut(s) 1224
Mly113I GGCGCC 1 cut(s) 68
MlyI GAGTC 6 cut(s) 298, 484, 1080, 1409, 2267, 2292
MmeI TCCRAC 1 cut(s) 1774
Mox20I TGGCCA 1 cut(s) 1224
MroI TCCGGA 1 cut(s) 562
MroNI GCCGGC 2 cut(s) 1129, 1415
MroXI GAANNNNTTC 2 cut(s) 357, 1432
MscI TGGCCA 1 cut(s) 1224
MseI TTAA 4 cut(s) 1344, 1575, 2328, 2457
MslI CAYNNNNRTG 3 cut(s) 986, 1022, 1377
Msp20I TGGCCA 1 cut(s) 1224
MspA1I CMGCKG 2 cut(s) 1986, 2183
MspI CCGG 7 cut(s) 24, 196, 416, 563, 1130, 1416, 2472
MspR9I CCNGG 6 cut(s) 73, 197, 417, 2295, 2558, 2609
MunI CAATTG 3 cut(s) 1199, 1668, 1782
MvaI CCWGG 4 cut(s) 73, 2295, 2558, 2609
MvnI CGCG 2 cut(s) 1146, 1405
MwoI GCNNNNNNNGC 7 cut(s) 1139, 1148, 1391, 1493, 1516, 1805, 2177
NaeI GCCGGC 2 cut(s) 1131, 1417
NarI GGCGCC 1 cut(s) 68
NciI CCSGG 2 cut(s) 197, 417
NcoI CCATGG 3 cut(s) 504, 625, 2532
NdeI CATATG 2 cut(s) 1138, 2323
NdeII GATC 6 cut(s) 1247, 1367, 1915, 2014, 2071, 2434
NgoMIV GCCGGC 2 cut(s) 1129, 1415
NheI GCTAGC 1 cut(s) 2552
NspI RCATGY 2 cut(s) 1602, 2641
PagI TCATGA 2 cut(s) 967, 1677
PaqCI CACCTGC 1 cut(s) 2492
PciSI GCTCTTC 1 cut(s) 1392
PdiI GCCGGC 2 cut(s) 1131, 1417
PdmI GAANNNNTTC 2 cut(s) 357, 1432
PflMI CCANNNNNTGG 1 cut(s) 505
PfoI TCCNGGA 1 cut(s) 2607
PleI GAGTC 6 cut(s) 297, 483, 1079, 1408, 2267, 2292
PluTI GGCGCC 1 cut(s) 71
PmaCI CACGTG 1 cut(s) 1325
PmlI CACGTG 1 cut(s) 1325
PpsI GAGTC 6 cut(s) 297, 483, 1079, 1408, 2267, 2292
Ppu21I YACGTR 2 cut(s) 937, 1325
PpuMI RGGWCCY 2 cut(s) 2332, 2622
PsiI TTATAA 1 cut(s) 182
Psp124BI GAGCTC 1 cut(s) 1314
Psp5II RGGWCCY 2 cut(s) 2332, 2622
Psp6I CCWGG 4 cut(s) 71, 2293, 2556, 2607
PspCI CACGTG 1 cut(s) 1325
PspFI CCCAGC 2 cut(s) 264, 943
PspGI CCWGG 4 cut(s) 71, 2293, 2556, 2607
PspPPI RGGWCCY 2 cut(s) 2332, 2622
PsrI GAACNNNNNNTAC 2 cut(s) 622, 654
PstI CTGCAG 1 cut(s) 892
PstNI CAGNNNCTG 1 cut(s) 653
PsuI RGATCY 1 cut(s) 2434
PvuII CAGCTG 1 cut(s) 2183
RsaI GTAC 2 cut(s) 116, 939
RsaNI GTAC 2 cut(s) 115, 938
RseI CAYNNNNRTG 3 cut(s) 986, 1022, 1377
SacI GAGCTC 1 cut(s) 1314
SapI GCTCTTC 1 cut(s) 1392
SaqAI TTAA 4 cut(s) 1344, 1575, 2328, 2457
Sau3AI GATC 6 cut(s) 1247, 1367, 1915, 2014, 2071, 2434
SchI GAGTC 6 cut(s) 298, 484, 1080, 1409, 2267, 2292
ScrFI CCNGG 6 cut(s) 73, 197, 417, 2295, 2558, 2609
SduI GDGCHC 4 cut(s) 105, 1314, 1653, 2680
SfaNI GCATC 7 cut(s) 457, 1026, 1092, 1222, 1267, 1372, 1837
SfcI CTRYAG 3 cut(s) 888, 948, 2184
SfoI GGCGCC 1 cut(s) 69
SinI GGWCC 6 cut(s) 302, 405, 1770, 2332, 2474, 2622
SmiMI CAYNNNNRTG 3 cut(s) 986, 1022, 1377
SmlI CTYRAG 6 cut(s) 258, 881, 2196, 2377, 2495, 2596
SmoI CTYRAG 6 cut(s) 258, 881, 2196, 2377, 2495, 2596
SnaBI TACGTA 1 cut(s) 937
SsiI CCGC 1 cut(s) 1986
SspDI GGCGCC 1 cut(s) 67
SspMI CTAG 7 cut(s) 35, 524, 1058, 1083, 1212, 2175, 2553
SstI GAGCTC 1 cut(s) 1314
StyD4I CCNGG 6 cut(s) 71, 195, 415, 2293, 2556, 2607
StyI CCWWGG 8 cut(s) 408, 504, 625, 1225, 1330, 1440, 1590, 2532
TaaI ACNGT 6 cut(s) 119, 544, 643, 1339, 2153, 2310
TaiI ACGT 2 cut(s) 939, 1327
TaqI TCGA 5 cut(s) 369, 837, 1351, 2271, 2539
Tru1I TTAA 4 cut(s) 1344, 1575, 2328, 2457
Tru9I TTAA 4 cut(s) 1344, 1575, 2328, 2457
TscAI CASTG 4 cut(s) 549, 768, 2029, 2293
TspDTI ATGAA 5 cut(s) 629, 956, 1137, 1677, 2223
TspGWI ACGGA 2 cut(s) 178, 569
TspRI CASTG 4 cut(s) 549, 768, 2029, 2293
Van91I CCANNNNNTGG 1 cut(s) 505
VpaK11BI GGWCC 6 cut(s) 302, 405, 1770, 2332, 2474, 2622
XagI CCTNNNNNAGG 1 cut(s) 857
XapI RAATTY 6 cut(s) 677, 748, 976, 1533, 1991, 2573
XceI RCATGY 2 cut(s) 1602, 2641
XmiI GTMKAC 1 cut(s) 445
XmnI GAANNNNTTC 2 cut(s) 357, 1432
XspI CTAG 7 cut(s) 35, 524, 1058, 1083, 1212, 2175, 2553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.