RLG00000019759

Staphylococcal nuclease domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004359
Physical Location & Seq
Forward (+)
56370964 .. 56372002
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019759

Sequence Viewer

Length: 651 bp
ATGTCTCTCTCTGTCAGGCATCGGGAAACATGTAGCATTGCTTTCTCGTTCTCTGGTGTTAGATGTCCTGGTCGTGATGAGCCATATTCGGACGAAGCCATTGCACTTATGAGGCGAAGAATAATGCAGAGAGATGTCGAGATTGAAGTGGAGACTGTTGATAGAACTGGAACTTTCTTGGGATCTCTATGGGAATCAAGGACTAACATGGCAATTGCCCTCGTTGAAGCTGGCCTTGCAAAGTATACTTCCTTTGCCGGCAGTGACAGGATCCCAGATGCCCTCCTGCTTGAACAAGCTGAGAAAAATGCAAAAAAGCAGAAACTGAAAATTTGGGAGAAATATGTTGAAGGAGAGGAAGTTCCAAATGGTTTACGAACTGACACCAAACAGAAAGAAGTGCTAAAGGTAGTGGTTACAGAAGTTTTGGAGGGTGGTAAATTTTATGTTCAGACAGTTGGGGAGCAGAGTATATCTTCTATTCAGCAACAGCTTGCTTCATTGAATCTTCAAGAAGCTCCCTTAATTGGTGCTTTTAATCCAAAGAAGGGTGACATTGTCCTTGCTCAATTTAGTGCAGATAATTCCACTCGTGGTGAGGACTTTGCTGTAGTTTCTTCTTGTTCACACAATCGATACTCAATATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010371 GO:0010372 GO:0010467 GO:0010468 GO:0010494 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016070 GO:0016071 GO:0016101 GO:0016102 GO:0016114 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019439 GO:0019747 GO:0019752 GO:0030054 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046394 GO:0046483 GO:0046686 GO:0046700 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05169 ko05203 map05169 map05203
Pfam Domains
Protein Families
SNase TUDOR

Protein Analysis

217

Amino Acids

24.02

Weight (kDa)

5.59

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNase PF00565 16 - 113 5.7e-16 Staphylococcal nuclease homologue
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 245
AclWI GGATC 3 cut(s) 190, 265, 278
AcsI RAATTY 2 cut(s) 330, 440
AfiI CCNNNNNNNGG 2 cut(s) 527, 548
AflIII ACRYGT 1 cut(s) 29
AgsI TTSAA 6 cut(s) 146, 227, 293, 350, 505, 512
AjnI CCWGG 1 cut(s) 67
AloI GAACNNNNNNTCC 2 cut(s) 345, 377
AluBI AGCT 4 cut(s) 230, 299, 493, 518
AluI AGCT 4 cut(s) 230, 299, 493, 518
Alw26I GTCTC 2 cut(s) 9, 146
AlwI GGATC 3 cut(s) 190, 265, 278
AlwNI CAGNNNCTG 1 cut(s) 325
AoxI GGCC 1 cut(s) 232
ApoI RAATTY 2 cut(s) 330, 440
AsuHPI GGTGA 2 cut(s) 563, 608
BamHI GGATCC 1 cut(s) 270
BauI CACGAG 1 cut(s) 591
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 9, 146
BfmI CTRYAG 1 cut(s) 609
Bme1390I CCNGG 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 2 cut(s) 28, 268
Bsa29I ATCGAT 1 cut(s) 634
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 2 cut(s) 527, 548
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 2 cut(s) 36, 99
BseBI CCWGG 1 cut(s) 69
BseCI ATCGAT 1 cut(s) 634
BseLI CCNNNNNNNGG 2 cut(s) 527, 548
BseMI GCAATG 2 cut(s) 36, 99
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 597
BshFI GGCC 1 cut(s) 234
BshVI ATCGAT 1 cut(s) 634
BsiSI CCGG 1 cut(s) 258
BslI CCNNNNNNNGG 2 cut(s) 527, 548
BsmAI GTCTC 2 cut(s) 9, 146
BsnI GGCC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 182, 270
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 292
BspDI ATCGAT 1 cut(s) 634
BspLI GGNNCC 1 cut(s) 272
BspPI GGATC 3 cut(s) 190, 265, 278
BsrDI GCAATG 2 cut(s) 36, 99
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 1 cut(s) 172
BssAI RCCGGY 1 cut(s) 257
BssMI GATC 2 cut(s) 182, 270
BssNAI GTATAC 1 cut(s) 246
BssSI CACGAG 1 cut(s) 591
Bst1107I GTATAC 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 591
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 157, 457
BstC8I GCNNGC 3 cut(s) 232, 259, 495
BstDEI CTNAG 1 cut(s) 300
BstKTI GATC 2 cut(s) 185, 273
BstMAI GTCTC 2 cut(s) 9, 146
BstMBI GATC 2 cut(s) 182, 270
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 609
BstX2I RGATCY 2 cut(s) 182, 270
BstYI RGATCY 2 cut(s) 182, 270
BstZ17I GTATAC 1 cut(s) 246
Bsu15I ATCGAT 1 cut(s) 634
BsuRI GGCC 1 cut(s) 234
BsuTUI ATCGAT 1 cut(s) 634
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 3 cut(s) 232, 259, 495
CaiI CAGNNNCTG 1 cut(s) 325
Cfr10I RCCGGY 1 cut(s) 257
ClaI ATCGAT 1 cut(s) 634
CviAII CATG 2 cut(s) 30, 208
CviJI RGCY 7 cut(s) 82, 98, 230, 234, 299, 493, 518
CviKI_1 RGCY 7 cut(s) 82, 98, 230, 234, 299, 493, 518
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 184, 272
DpnII GATC 2 cut(s) 182, 270
EcoRII CCWGG 1 cut(s) 67
FaeI CATG 2 cut(s) 33, 211
FaiI YATR 9 cut(s) 31, 85, 110, 190, 209, 246, 345, 447, 473
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FatI CATG 2 cut(s) 29, 207
FblI GTMKAC 1 cut(s) 245
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 258
Hin1II CATG 2 cut(s) 33, 211
HinfI GANTC 2 cut(s) 194, 505
HpaII CCGG 1 cut(s) 258
HphI GGTGA 2 cut(s) 563, 608
Hpy166II GTNNAC 3 cut(s) 246, 374, 626
Hpy188I TCNGA 2 cut(s) 91, 453
Hpy188III TCNNGA 4 cut(s) 23, 74, 139, 512
Hpy8I GTNNAC 3 cut(s) 246, 374, 626
HpyAV CCTTC 2 cut(s) 344, 541
HpyCH4III ACNGT 2 cut(s) 157, 457
HpyCH4V TGCA 5 cut(s) 104, 127, 239, 311, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 2 cut(s) 33, 211
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Kzo9I GATC 2 cut(s) 182, 270
LmnI GCTCC 2 cut(s) 463, 523
LpnPI CCDG 9 cut(s) 39, 54, 81, 153, 216, 253, 271, 288, 299
LweI GCATC 2 cut(s) 28, 268
MaeIII GTNAC 3 cut(s) 263, 415, 551
MalI GATC 2 cut(s) 184, 272
MboI GATC 2 cut(s) 182, 270
MboII GAAGA 4 cut(s) 129, 468, 500, 609
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 2 cut(s) 182, 270
MluCI AATT 6 cut(s) 213, 330, 440, 525, 569, 583
MnlI CCTC 6 cut(s) 105, 230, 293, 349, 424, 592
MroNI GCCGGC 1 cut(s) 257
MseI TTAA 2 cut(s) 524, 537
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 69
MunI CAATTG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 236
NaeI GCCGGC 1 cut(s) 259
NdeII GATC 2 cut(s) 182, 270
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 2 cut(s) 33, 211
NlaIV GGNNCC 1 cut(s) 272
NmuCI GTSAC 2 cut(s) 263, 551
NspI RCATGY 1 cut(s) 33
PciI ACATGT 1 cut(s) 29
PdiI GCCGGC 1 cut(s) 259
PfeI GAWTC 2 cut(s) 194, 505
PflFI GACNNNGTC 1 cut(s) 557
PscI ACATGT 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 272
PstNI CAGNNNCTG 1 cut(s) 325
PsuI RGATCY 2 cut(s) 182, 270
PsyI GACNNNGTC 1 cut(s) 557
SaqAI TTAA 2 cut(s) 524, 537
Sau3AI GATC 2 cut(s) 182, 270
ScrFI CCNGG 1 cut(s) 69
SetI ASST 5 cut(s) 232, 301, 411, 495, 520
SfaNI GCATC 2 cut(s) 28, 268
SfcI CTRYAG 1 cut(s) 609
Sse9I AATT 6 cut(s) 213, 330, 440, 525, 569, 583
SspI AATATT 1 cut(s) 645
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 2 cut(s) 157, 457
TaqI TCGA 2 cut(s) 138, 634
TasI AATT 6 cut(s) 213, 330, 440, 525, 569, 583
TfiI GAWTC 2 cut(s) 194, 505
Tru1I TTAA 2 cut(s) 524, 537
Tru9I TTAA 2 cut(s) 524, 537
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 2 cut(s) 263, 551
Tsp45I GTSAC 2 cut(s) 263, 551
TspDTI ATGAA 1 cut(s) 489
TspRI CASTG 1 cut(s) 268
Tth111I GACNNNGTC 1 cut(s) 557
XapI RAATTY 2 cut(s) 330, 440
XceI RCATGY 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.