Rh6DG384300

Staphylococcal nuclease domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004359
Physical Location & Seq
Reverse (-)
57742754 .. 57745543
2790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG384300.1

Sequence Viewer

Length: 2790 bp
ATGGCCTCACCAGCAGGATGGTTGAAAGGAAAAGTGAAGGCGGTAACTTCAGGGGATACCCTTGTGATCATGGCCCTCAACCCAGACAAGACCGGAATCCCACGAGAAAAAACCATCACTCTGTCCTCACTTATGGCGCCCAGGCTGGCCCGAAGAGATGGCGTTGATGAGCCCTTTGCATGGTACAGTAGAGAGTTTCTGAGGCAGCTCTGCTTAGGAGAGGAGGTTGTCTTCAAGGTGGACTATGTTATAAAATCCATAGACCGGGATTTCGGTTCTGTCTTCCTTGCCAAGAGCAACGATAATGTCGCAAAGGTTGTTGTTTCTCAAGGCTGGGCAAAGGTCAGGGAGCCACAGAGTCAGCCAACAGGTCCGAGACAGGGACAACAGAAACAGATAGTAGAAGTTAGTCCTTACCTTGAAGAACTTCTTAGCCTCGAAGAGAAAGCAAAGACTGAAGGTCTTGGTTGCTGGACCAAGGTTCCGGGTGCTGCTGAGGAATCTATTAGGTGTCTACCTCCCAACAACAACTTTGATGCAATGAGTCTGTTAGCAGAAAACAAGGGCCAGCCCATGGAGGCTATTGTGGAGCAAGTTAGTGATGGCAGCACATTGGGGGTTTACTTGCTTCCGGAGTTTCAGTTTGTCCATGTATTCGTTGCAGGAACTCGGGCCCCTTCCATGAAAAGGAGCCATGGAACAAAAGAAACTGTCGCAGTTGCTGAAGCGTTTGCATTGGAATCTAAATTCTTTACAGAAGCTCGTGTGTTGAACAGGGATGTGCATATTGTTCTGCAAGGTGTTGACAAGTTCAGAAATTTGAATCATTTGATTGGGTCAGTGTATTACCCCGATGGAGAATCCGAAAAGGACTTGGGGCTGGAGCTTGTGGAGAATGGTTATGCAAAATATGTCGAATGGAGTGCAAACCTGATGGAGGAAGATGCAAAGAAACAGCTCAAGGCTGCAGAGCTTGAAGCTAAGAAAAGCAAGTTGAGGATGTGGACAAATTACGTACCCCCAGCTACAGGTTCAAAGCCAATTCATGACAAGAATTTCACAGGAAAGGTTGTGGAGGTTGTGAGTGGGGACTGCATCATTGTGGCTGATGATTCTCTTCCATCTGGCAGTCCACTAGCAGAGAGGAGAGTCAATCTTTCTAGTATTTGGTGTCCGAAGATGCACAATCCTCATAGAGATGAAAAGCCGGCTCCATATGCACGCGAAGCAAAGGAGTTGCTGAGGACACGCCTTATTGGTAGCCAAGTGAGTGTTCAATTGGAGTATTCTAGGAAGGTTGGCCAAGGAGATGCAATGGATTTTGGATCAGTCTTTGTGAAGGCTGTGGAGAAAGATGCAAGTGGGCAGGTTGGGGGGAATGTTGCTGAGCTCATGGTTGCACGTGGCCTTGGCACCGTTGTTAAACATCGAGATTTTGAGGAGAGATCGCACTATTATGATGCTCTTCTTGCTGCTGAGTCGCGTGCTATTGCCGGCAAGAAAGGAATACATTCTTCCAAGGAAGCCCCAGTCATGCACACAAGAGACTTGACAACTGAACCTGCCAAGAAAGCAAGCGAGTTCTTGCCATTCTTGCAGCGAAATAGGAAAATTCCTGCCATTGTGGAATATGTCCTTAGTGGTCATCGTTTTAAGCTATTTCTTCCCAAGGAAACATGCAGCATTGCCTTCTCTTTCTCAGGTGTGAGATGTCCCCGTCGTGAGGAGCCCTTTTCGGATGAAGCAATTGCAGTCATGAGGCGAAGAATAATGCAGAGAGAAGTTGAGATTGAGGTGGAGAGTGTTGACAAAACTGGAACTTTCTTGGGAACTTTATGGGAATCGGGGACCAATATGTCAATTGCTCTCGTTGGAGCTGGCCTTGCAAAATATACTCCCTTTGGCAACAGCGATAGGATTCTGGATGCTCACCTTCTTGAACAAGCTCAAAAATCTGCCAAACAGCAGAAATTGAAAATCTGGGAGAAGTATGATCAAGGACAGGAAGTTTCCAAGAAACAGAAAAAGGTGCTAAATGTTGTAGTTACAGAGATTTTGGACAGCGGTAAATTTTATGTTCAGACAACTGAGGACCAAAACACTGCCTCTATTCAGCAACAGCTTGCTTCTTTGAATCTTCAAGAATCTGATCCTGTAACCGATACTGATTTCAAGCCTAAGAAGGGAGACATTGTCCTTGCTCAGTTTAGTGCAGACAATTCTTGGAACCGTGCAATGATTATCAATGCTCCTAGAGCAGCTGTAGAATCCTCTCAAGACGAGTATGAAGTGTTCTACATTGATTACGGTAATCAAGAGGTTGTCCCTTTCAGTCAGTTACGGCCTCTCGACTCTTCTCTTGCCACTGCACCTGGCCTCGCCCAACTGTGCAGCCTTGCATATGTTAAGGTCCCAAGCTTGGAGGATAATTTTGGTGAAGAAGCAGCAGAGTTCTTGAGTGAGCAAACATTGAGCAGTTCCATAAAGTTCAGGGCCTTGATTGAGGGAAGGGATCTTTCAGAAGGAAAAGTTGTTAAAGGGCAGGGAACCGGACCAGCTCTTATGGTAACTCTTGAGGCAGGTGATGATGAGATGAGTATAAATGCTGCCATGGTTCGAGAGGGACTTGCTAGCCTGGACAAAGAGAAGAAATTTTGGAAGTCTTCCGAAACCTTGAGAGAGTTCCAGGAAGAAGCAAGGACCTATCGGCGAGGCATGTGGGAAGATGGAGATATTTATGCTCATGTGGACAGGGCTCGTCCCATTACAAGGACTGCTGGCAAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010371 GO:0010372 GO:0010467 GO:0010468 GO:0010494 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016070 GO:0016071 GO:0016101 GO:0016102 GO:0016114 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019439 GO:0019747 GO:0019752 GO:0030054 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046394 GO:0046483 GO:0046686 GO:0046700 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05169 ko05203 map05169 map05203
Pfam Domains
Protein Families
SNase TUDOR

Protein Analysis

929

Amino Acids

103.24

Weight (kDa)

6.11

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNase PF00565 224 - 336 1e-11 Staphylococcal nuclease homologue
SNase PF00565 383 - 504 1.4e-06 Staphylococcal nuclease homologue
SNase PF00565 565 - 662 4.1e-15 Staphylococcal nuclease homologue
TUDOR PF00567 675 - 800 1.3e-23 Tudor domain
SNase PF00565 807 - 909 6.1e-08 Staphylococcal nuclease homologue
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AarI CACCTGC 1 cut(s) 2570
AasI GACNNNNNNGTC 1 cut(s) 1855
Acc36I ACCTGC 3 cut(s) 1357, 1570, 2570
AccB1I GGYRCC 2 cut(s) 136, 1412
AccB7I CCANNNNNTGG 1 cut(s) 574
AccI GTMKAC 1 cut(s) 514
AccII CGCG 2 cut(s) 1224, 1483
AccIII TCCGGA 1 cut(s) 631
AciI CCGC 2 cut(s) 41, 2064
AclWI GGATC 3 cut(s) 1333, 2144, 2520
AcoI YGGCCR 1 cut(s) 1300
AcsI RAATTY 6 cut(s) 746, 817, 1054, 1611, 2069, 2651
AcuI CTGAAG 3 cut(s) 33, 477, 744
AcvI CACGTG 1 cut(s) 1403
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 2 cut(s) 185, 1017
AhdI GACNNNNNGTC 1 cut(s) 459
AjnI CCWGG 4 cut(s) 140, 2371, 2634, 2685
AjuI GAANNNNNNNTTGG 2 cut(s) 1257, 1289
Alw21I GWGCWC 1 cut(s) 1392
Alw26I GTCTC 3 cut(s) 370, 1539, 2181
AlwI GGATC 3 cut(s) 1333, 2144, 2520
AlwNI CAGNNNCTG 1 cut(s) 722
Ama87I CYCGRG 1 cut(s) 669
Aor13HI TCCGGA 1 cut(s) 631
ApaI GGGCCC 1 cut(s) 676
ApoI RAATTY 6 cut(s) 746, 817, 1054, 1611, 2069, 2651
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
Asp700I GAANNNNTTC 2 cut(s) 426, 1510
AspLEI GCGC 1 cut(s) 139
AsuC2I CCSGG 2 cut(s) 266, 486
AsuHPI GGTGA 3 cut(s) 1922, 2447, 2594
AsuNHI GCTAGC 1 cut(s) 2630
AvaI CYCGRG 1 cut(s) 669
AvaII GGWCC 7 cut(s) 371, 474, 1848, 2092, 2410, 2552, 2700
BaeGI GKGCMC 1 cut(s) 676
BaeI ACNNNNGTAYC 2 cut(s) 48, 81
BalI TGGCCA 1 cut(s) 1302
BanI GGYRCC 2 cut(s) 136, 1412
BanII GRGCYC 5 cut(s) 174, 676, 1392, 1731, 2758
BauI CACGAG 2 cut(s) 102, 762
BbrPI CACGTG 1 cut(s) 1403
BbsI GAAGAC 3 cut(s) 223, 274, 2655
Bbv12I GWGCWC 1 cut(s) 1392
BbvCI CCTCAGC 2 cut(s) 495, 1241
BccI CCATC 8 cut(s) 12, 122, 152, 596, 848, 928, 1129, 2720
BceAI ACGGC 1 cut(s) 2357
BcgI CGANNNNNNTGC 2 cut(s) 905, 939
BciT130I CCWGG 4 cut(s) 142, 2373, 2636, 2687
BciVI GTATCC 1 cut(s) 49
BclI TGATCA 2 cut(s) 66, 1993
BcnI CCSGG 2 cut(s) 266, 486
BcoDI GTCTC 3 cut(s) 370, 1539, 2181
BfaI CTAG 5 cut(s) 1136, 1161, 1290, 2253, 2631
BfmI CTRYAG 3 cut(s) 966, 1026, 2262
BfoI RGCGCY 1 cut(s) 140
BfuAI ACCTGC 3 cut(s) 1357, 1570, 2570
BfuI GTATCC 1 cut(s) 49
BlpI GCTNAGC 1 cut(s) 1386
Bme1390I CCNGG 6 cut(s) 142, 266, 486, 2373, 2636, 2687
Bme18I GGWCC 7 cut(s) 371, 474, 1848, 2092, 2410, 2552, 2700
BmeRI GACNNNNNGTC 1 cut(s) 459
BmeT110I CYCGRG 1 cut(s) 669
BmrFI CCNGG 6 cut(s) 142, 266, 486, 2373, 2636, 2687
BmrI ACTGGG 1 cut(s) 1523
BmsI GCATC 8 cut(s) 526, 934, 1104, 1170, 1300, 1345, 1450, 1915
BmtI GCTAGC 1 cut(s) 2634
BmuI ACTGGG 1 cut(s) 1523
BpiI GAAGAC 3 cut(s) 223, 274, 2655
BpmI CTGGAG 1 cut(s) 902
Bpu10I CCTNAGC 3 cut(s) 214, 495, 1241
Bpu1102I GCTNAGC 1 cut(s) 1386
BpuEI CTTGAG 6 cut(s) 312, 944, 2259, 2476, 2594, 2695
BpuMI CCSGG 2 cut(s) 266, 486
BsaAI YACGTR 2 cut(s) 1015, 1403
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 9 cut(s) 140, 477, 573, 694, 1303, 1408, 1518, 1668, 2610
BsaWI WCCGGW 3 cut(s) 92, 631, 2549
BsaXI ACNNNNNCTCC 6 cut(s) 210, 240, 626, 656, 2178, 2208
Bse118I RCCGGY 2 cut(s) 1207, 1493
Bse1I ACTGG 2 cut(s) 1529, 1819
Bse3DI GCAATG 4 cut(s) 546, 1320, 1683, 2241
BseAI TCCGGA 1 cut(s) 631
BseBI CCWGG 4 cut(s) 142, 2373, 2636, 2687
BseDI CCNNGG 9 cut(s) 140, 477, 573, 694, 1303, 1408, 1518, 1668, 2610
BseGI GGATG 5 cut(s) 23, 784, 1005, 1744, 1930
BseMI GCAATG 4 cut(s) 546, 1320, 1683, 2241
BseMII CTCAG 8 cut(s) 191, 486, 1232, 1377, 1467, 1713, 2079, 2216
BseNI ACTGG 2 cut(s) 1529, 1819
BseRI GAGGAG 4 cut(s) 236, 1159, 1454, 1739
BseSI GKGCMC 1 cut(s) 676
BseYI CCCAGC 2 cut(s) 333, 1021
BsgI GTGCAG 3 cut(s) 2232, 2352, 2410
Bsh1236I CGCG 2 cut(s) 1224, 1483
BshNI GGYRCC 2 cut(s) 136, 1412
BsiHKAI GWGCWC 1 cut(s) 1392
BsiHKCI CYCGRG 1 cut(s) 669
BsiSI CCGG 7 cut(s) 93, 265, 485, 632, 1208, 1494, 2550
BslFI GGGAC 8 cut(s) 396, 1103, 1698, 1861, 2309, 2396, 2637, 2745
BsmAI GTCTC 3 cut(s) 370, 1539, 2181
BsmFI GGGAC 8 cut(s) 396, 1103, 1698, 1861, 2309, 2396, 2637, 2745
BsoBI CYCGRG 1 cut(s) 669
Bsp120I GGGCCC 1 cut(s) 672
Bsp1286I GDGCHC 5 cut(s) 174, 676, 1392, 1731, 2758
Bsp13I TCCGGA 1 cut(s) 631
Bsp143I GATC 6 cut(s) 66, 1325, 1445, 1993, 2149, 2512
Bsp1720I GCTNAGC 1 cut(s) 1386
Bsp19I CCATGG 3 cut(s) 573, 694, 2610
BspACI CCGC 2 cut(s) 41, 2064
BspCNI CTCAG 8 cut(s) 192, 487, 1233, 1378, 1468, 1712, 2080, 2215
BspEI TCCGGA 1 cut(s) 631
BspFNI CGCG 2 cut(s) 1224, 1483
BspHI TCATGA 2 cut(s) 1045, 1755
BspMAI CTGCAG 1 cut(s) 970
BspMI ACCTGC 3 cut(s) 1357, 1570, 2570
BspOI GCTAGC 1 cut(s) 2634
BspPI GGATC 3 cut(s) 1333, 2144, 2520
BspQI GCTCTTC 1 cut(s) 1470
BspT107I GGYRCC 2 cut(s) 136, 1412
BsrDI GCAATG 4 cut(s) 546, 1320, 1683, 2241
BsrFI RCCGGY 2 cut(s) 1207, 1493
BsrI ACTGG 2 cut(s) 1529, 1819
BssAI RCCGGY 2 cut(s) 1207, 1493
BssECI CCNNGG 9 cut(s) 140, 477, 573, 694, 1303, 1408, 1518, 1668, 2610
BssMI GATC 6 cut(s) 66, 1325, 1445, 1993, 2149, 2512
BssNI GRCGYC 1 cut(s) 137
BssSI CACGAG 2 cut(s) 102, 762
BssT1I CCWWGG 8 cut(s) 477, 573, 694, 1303, 1408, 1518, 1668, 2610
Bst2BI CACGAG 2 cut(s) 102, 762
Bst2UI CCWGG 4 cut(s) 142, 2373, 2636, 2687
Bst4CI ACNGT 6 cut(s) 188, 712, 1417, 2231, 2309, 2388
Bst6I CTCTTC 5 cut(s) 148, 435, 1122, 1470, 2359
BstACI GRCGYC 1 cut(s) 137
BstBAI YACGTR 2 cut(s) 1015, 1403
BstDSI CCRYGG 3 cut(s) 573, 694, 2610
BstENI CCTNNNNNAGG 1 cut(s) 935
BstF5I GGATG 5 cut(s) 23, 784, 1005, 1744, 1930
BstFNI CGCG 2 cut(s) 1224, 1483
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 6 cut(s) 69, 1328, 1448, 1996, 2152, 2515
BstMAI GTCTC 3 cut(s) 370, 1539, 2181
BstMBI GATC 6 cut(s) 66, 1325, 1445, 1993, 2149, 2512
BstMWI GCNNNNNNNGC 8 cut(s) 11, 1217, 1226, 1469, 1571, 1594, 1883, 2255
BstNI CCWGG 4 cut(s) 142, 2373, 2636, 2687
BstNSI RCATGY 2 cut(s) 1680, 2719
BstSCI CCNGG 6 cut(s) 140, 264, 484, 2371, 2634, 2685
BstSFI CTRYAG 3 cut(s) 966, 1026, 2262
BstSLI GKGCMC 1 cut(s) 676
BstSNI TACGTA 1 cut(s) 1015
BstUI CGCG 2 cut(s) 1224, 1483
BstV2I GAAGAC 3 cut(s) 223, 274, 2655
BstX2I RGATCY 1 cut(s) 2512
BstXI CCANNNNNNTGG 1 cut(s) 18
BstYI RGATCY 1 cut(s) 2512
BsuI GTATCC 1 cut(s) 49
BtgI CCRYGG 3 cut(s) 573, 694, 2610
BtsCI GGATG 5 cut(s) 23, 784, 1005, 1744, 1930
BtsI GCAGTG 2 cut(s) 2100, 2364
BtsIMutI CAGTG 3 cut(s) 846, 2100, 2364
BveI ACCTGC 3 cut(s) 1357, 1570, 2570
CaiI CAGNNNCTG 1 cut(s) 722
CciI TCATGA 2 cut(s) 1045, 1755
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 2 cut(s) 1207, 1493
Csp6I GTAC 2 cut(s) 184, 1016
CviQI GTAC 2 cut(s) 184, 1016
DinI GGCGCC 1 cut(s) 138
DpnI GATC 6 cut(s) 68, 1327, 1447, 1995, 2151, 2514
DpnII GATC 6 cut(s) 66, 1325, 1445, 1993, 2149, 2512
DrdI GACNNNNNNGTC 1 cut(s) 1855
DriI GACNNNNNGTC 1 cut(s) 459
DseDI GACNNNNNNGTC 1 cut(s) 1855
EaeI YGGCCR 1 cut(s) 1300
Eam1104I CTCTTC 5 cut(s) 148, 435, 1122, 1470, 2359
Eam1105I GACNNNNNGTC 1 cut(s) 459
EarI CTCTTC 5 cut(s) 148, 435, 1122, 1470, 2359
Ecl136II GAGCTC 1 cut(s) 1390
Eco105I TACGTA 1 cut(s) 1015
Eco130I CCWWGG 8 cut(s) 477, 573, 694, 1303, 1408, 1518, 1668, 2610
Eco24I GRGCYC 5 cut(s) 174, 676, 1392, 1731, 2758
Eco47I GGWCC 7 cut(s) 371, 474, 1848, 2092, 2410, 2552, 2700
Eco53kI GAGCTC 1 cut(s) 1390
Eco57I CTGAAG 3 cut(s) 33, 477, 744
Eco72I CACGTG 1 cut(s) 1403
Eco88I CYCGRG 1 cut(s) 669
EcoICRI GAGCTC 1 cut(s) 1390
EcoNI CCTNNNNNAGG 1 cut(s) 935
EcoO109I RGGNCCY 4 cut(s) 673, 2410, 2493, 2700
EcoRII CCWGG 4 cut(s) 140, 2371, 2634, 2685
EcoT14I CCWWGG 8 cut(s) 477, 573, 694, 1303, 1408, 1518, 1668, 2610
EcoT38I GRGCYC 5 cut(s) 174, 676, 1392, 1731, 2758
EgeI GGCGCC 1 cut(s) 138
EheI GGCGCC 1 cut(s) 138
ErhI CCWWGG 8 cut(s) 477, 573, 694, 1303, 1408, 1518, 1668, 2610
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FaqI GGGAC 8 cut(s) 396, 1103, 1698, 1861, 2309, 2396, 2637, 2745
FauNDI CATATG 2 cut(s) 1216, 2401
FbaI TGATCA 2 cut(s) 66, 1993
FblI GTMKAC 1 cut(s) 514
FokI GGATG 5 cut(s) 30, 791, 1012, 1751, 1937
FriOI GRGCYC 5 cut(s) 174, 676, 1392, 1731, 2758
FspBI CTAG 5 cut(s) 1136, 1161, 1290, 2253, 2631
GlaI GCGC 1 cut(s) 138
GsaI CCCAGC 2 cut(s) 337, 1025
GsuI CTGGAG 1 cut(s) 902
HaeII RGCGCY 1 cut(s) 140
HapII CCGG 7 cut(s) 93, 265, 485, 632, 1208, 1494, 2550
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 137
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 2 cut(s) 805, 1807
HindII GTYRAC 2 cut(s) 805, 1807
HindIII AAGCTT 1 cut(s) 2416
HpaII CCGG 7 cut(s) 93, 265, 485, 632, 1208, 1494, 2550
HphI GGTGA 3 cut(s) 1922, 2447, 2594
Hpy166II GTNNAC 8 cut(s) 241, 515, 622, 805, 1005, 1133, 1807, 2749
Hpy8I GTNNAC 8 cut(s) 241, 515, 622, 805, 1005, 1133, 1807, 2749
Hpy99I CGWCG 1 cut(s) 1722
HpyCH4III ACNGT 6 cut(s) 188, 712, 1417, 2231, 2309, 2388
HpyCH4IV ACGT 2 cut(s) 1014, 1402
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 1217, 1226, 1469, 1571, 1594, 1883, 2255
HpySE526I ACGT 2 cut(s) 1014, 1402
Hsp92I GRCGYC 1 cut(s) 137
HspAI GCGC 1 cut(s) 137
KasI GGCGCC 1 cut(s) 136
Kpn2I TCCGGA 1 cut(s) 631
KroI GCCGGC 2 cut(s) 1207, 1493
KroNI GCCGGC 2 cut(s) 1209, 1495
Ksp22I TGATCA 2 cut(s) 66, 1993
Kzo9I GATC 6 cut(s) 66, 1325, 1445, 1993, 2149, 2512
LguI GCTCTTC 1 cut(s) 1470
LmnI GCTCC 8 cut(s) 349, 589, 690, 883, 1216, 1726, 1874, 2254
LweI GCATC 8 cut(s) 526, 934, 1104, 1170, 1300, 1345, 1450, 1915
MaeI CTAG 5 cut(s) 1136, 1161, 1290, 2253, 2631
MaeII ACGT 2 cut(s) 1014, 1402
MaeIII GTNAC 5 cut(s) 43, 2044, 2155, 2337, 2566
MalI GATC 6 cut(s) 68, 1327, 1447, 1995, 2151, 2514
MboI GATC 6 cut(s) 66, 1325, 1445, 1993, 2149, 2512
MfeI CAATTG 3 cut(s) 1277, 1746, 1860
MflI RGATCY 1 cut(s) 2512
MhlI GDGCHC 5 cut(s) 174, 676, 1392, 1731, 2758
MlsI TGGCCA 1 cut(s) 1302
MluNI TGGCCA 1 cut(s) 1302
Mly113I GGCGCC 1 cut(s) 137
MlyI GAGTC 5 cut(s) 367, 553, 1158, 1487, 2345
MmeI TCCRAC 1 cut(s) 1852
Mox20I TGGCCA 1 cut(s) 1302
MroI TCCGGA 1 cut(s) 631
MroNI GCCGGC 2 cut(s) 1207, 1493
MroXI GAANNNNTTC 2 cut(s) 426, 1510
MscI TGGCCA 1 cut(s) 1302
MseI TTAA 4 cut(s) 1422, 1653, 2406, 2535
MslI CAYNNNNRTG 3 cut(s) 1100, 1197, 1455
Msp20I TGGCCA 1 cut(s) 1302
MspA1I CMGCKG 2 cut(s) 2064, 2261
MspI CCGG 7 cut(s) 93, 265, 485, 632, 1208, 1494, 2550
MspR9I CCNGG 6 cut(s) 142, 266, 486, 2373, 2636, 2687
MunI CAATTG 3 cut(s) 1277, 1746, 1860
MvaI CCWGG 4 cut(s) 142, 2373, 2636, 2687
MvnI CGCG 2 cut(s) 1224, 1483
MwoI GCNNNNNNNGC 8 cut(s) 11, 1217, 1226, 1469, 1571, 1594, 1883, 2255
NaeI GCCGGC 2 cut(s) 1209, 1495
NarI GGCGCC 1 cut(s) 137
NciI CCSGG 2 cut(s) 266, 486
NcoI CCATGG 3 cut(s) 573, 694, 2610
NdeI CATATG 2 cut(s) 1216, 2401
NdeII GATC 6 cut(s) 66, 1325, 1445, 1993, 2149, 2512
NgoMIV GCCGGC 2 cut(s) 1207, 1493
NheI GCTAGC 1 cut(s) 2630
NspI RCATGY 2 cut(s) 1680, 2719
PagI TCATGA 2 cut(s) 1045, 1755
PaqCI CACCTGC 1 cut(s) 2570
PciSI GCTCTTC 1 cut(s) 1470
PdiI GCCGGC 2 cut(s) 1209, 1495
PdmI GAANNNNTTC 2 cut(s) 426, 1510
PflFI GACNNNGTC 1 cut(s) 2192
PflMI CCANNNNNTGG 1 cut(s) 574
PfoI TCCNGGA 1 cut(s) 2685
PleI GAGTC 5 cut(s) 366, 552, 1157, 1486, 2345
PluTI GGCGCC 1 cut(s) 140
PmaCI CACGTG 1 cut(s) 1403
PmlI CACGTG 1 cut(s) 1403
PpsI GAGTC 5 cut(s) 366, 552, 1157, 1486, 2345
Ppu21I YACGTR 2 cut(s) 1015, 1403
PpuMI RGGWCCY 2 cut(s) 2410, 2700
PsiI TTATAA 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 1392
Psp5II RGGWCCY 2 cut(s) 2410, 2700
Psp6I CCWGG 4 cut(s) 140, 2371, 2634, 2685
PspCI CACGTG 1 cut(s) 1403
PspFI CCCAGC 2 cut(s) 333, 1021
PspGI CCWGG 4 cut(s) 140, 2371, 2634, 2685
PspOMI GGGCCC 1 cut(s) 672
PspPPI RGGWCCY 2 cut(s) 2410, 2700
PsrI GAACNNNNNNTAC 2 cut(s) 2276, 2308
PstI CTGCAG 1 cut(s) 970
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 1 cut(s) 2512
PsyI GACNNNGTC 1 cut(s) 2192
PvuII CAGCTG 1 cut(s) 2261
RsaI GTAC 2 cut(s) 185, 1017
RsaNI GTAC 2 cut(s) 184, 1016
RseI CAYNNNNRTG 3 cut(s) 1100, 1197, 1455
SacI GAGCTC 1 cut(s) 1392
SapI GCTCTTC 1 cut(s) 1470
SaqAI TTAA 4 cut(s) 1422, 1653, 2406, 2535
Sau3AI GATC 6 cut(s) 66, 1325, 1445, 1993, 2149, 2512
SchI GAGTC 5 cut(s) 367, 553, 1158, 1487, 2345
ScrFI CCNGG 6 cut(s) 142, 266, 486, 2373, 2636, 2687
SduI GDGCHC 5 cut(s) 174, 676, 1392, 1731, 2758
SfaNI GCATC 8 cut(s) 526, 934, 1104, 1170, 1300, 1345, 1450, 1915
SfcI CTRYAG 3 cut(s) 966, 1026, 2262
SfoI GGCGCC 1 cut(s) 138
SinI GGWCC 7 cut(s) 371, 474, 1848, 2092, 2410, 2552, 2700
SmiMI CAYNNNNRTG 3 cut(s) 1100, 1197, 1455
SmlI CTYRAG 6 cut(s) 327, 959, 2274, 2455, 2573, 2674
SmoI CTYRAG 6 cut(s) 327, 959, 2274, 2455, 2573, 2674
SnaBI TACGTA 1 cut(s) 1015
SsiI CCGC 2 cut(s) 41, 2064
SspDI GGCGCC 1 cut(s) 136
SspMI CTAG 5 cut(s) 1136, 1161, 1290, 2253, 2631
SstI GAGCTC 1 cut(s) 1392
StyD4I CCNGG 6 cut(s) 140, 264, 484, 2371, 2634, 2685
StyI CCWWGG 8 cut(s) 477, 573, 694, 1303, 1408, 1518, 1668, 2610
TaaI ACNGT 6 cut(s) 188, 712, 1417, 2231, 2309, 2388
TaiI ACGT 2 cut(s) 1017, 1405
TaqI TCGA 5 cut(s) 438, 915, 1429, 2349, 2617
Tru1I TTAA 4 cut(s) 1422, 1653, 2406, 2535
Tru9I TTAA 4 cut(s) 1422, 1653, 2406, 2535
TscAI CASTG 3 cut(s) 846, 2107, 2371
TspDTI ATGAA 5 cut(s) 698, 1034, 1215, 1755, 2301
TspRI CASTG 3 cut(s) 846, 2107, 2371
Tth111I GACNNNGTC 1 cut(s) 2192
Van91I CCANNNNNTGG 1 cut(s) 574
VpaK11BI GGWCC 7 cut(s) 371, 474, 1848, 2092, 2410, 2552, 2700
XagI CCTNNNNNAGG 1 cut(s) 935
XapI RAATTY 6 cut(s) 746, 817, 1054, 1611, 2069, 2651
XceI RCATGY 2 cut(s) 1680, 2719
XmiI GTMKAC 1 cut(s) 514
XmnI GAANNNNTTC 2 cut(s) 426, 1510
XspI CTAG 5 cut(s) 1136, 1161, 1290, 2253, 2631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.