Rw6G033420

Staphylococcal nuclease domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0004359
Physical Location & Seq
Reverse (-)
57968395 .. 57971175
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033420.1

Sequence Viewer

Length: 2742 bp
ATGGCCTCATCAGCAGGATGGTTGAAAGGAAAAGTGAAGGCGGTAACTTCAGGGGATACCCTTGTGATCATGGCCCTCAACCCAGACAAGACCGGAATCCCACGAGAAAAAACCATCACTCTGTCCTCACTTATGGCGCCCAGGCTGGCCCGAGGAGATGGCGTTGATGAGCCCTTTGCATGGTACAGTAGAGAGTTTCTGAGGCAGCTCTGCTTAGGAGAGGAGGTTGTCTTCAAGGTGGACTATGTTATAAAATCCATAGTCCGGGATTTCGGTTCTGTCTTCCTTGCCAAGAGCAACGATAATGTCGCAAAGCTTGTTGTTTCTCAAGGCTGGGCAAAGGGCCAACAGAAACAGATAGTAGAAGTTAGTCCTTTCCTTGAAGAACTTCTTAGCCTCGAAGAGAAAGCAAAGACTGAAGGTCTTGGTTGCTGGACCAAGGTTCCGGGTGCTGCTGAGGAATCTATTAGGTGTCTACCTCCCAACAACAACTTTGATGCAATGAGTCTGTTAGCAGAGAACAAGGGCCAGCCCATGGAGGCTATTGTGGAGCAAGTTCGTGATGGCAGCACATTGGGGGTAAACTTGCTTCCGGAGTTTCAGTTTGTCCGTGTATTCGTTGCAGGAACTCGGGCCCCCTCCATGAAAAGGAGCCATGGAACAAAAGAAACTGTCGCAGTTGCTGAAGCGTTTGCATTGGAATCTAAATTCTTTACAGAAGCTCGTGTGTTGAACAGGGATGTGCATATTGTTCTGCAAGGTGTTGACAAGTTCAGAAATTTGATTGGGTCAGTGTATTACCCCGATGGAGAATCCGAAAAGGACTTGGGGCTGGAGCTTGTGGAGAATGGTTATGCAAAATATGTCGAATCGAGTGCAAACCTGATGGAGGAAGATGCAAAGAAACAGCTCAAGGCTGCAGAGCTTGAAGCTAAGAAAAGCAAGTTGAGGATGTGGACAAATTACGTACCCCCAGCTACAGGTTCAAAGCCAATTCATGACAAGAATTTCACAGGAAAGGTTGTGGAGGTTGTGAGTGGGGACTGCATCATTGTGGCTGATGATTCTCTTCCATCTGGCAGTCCACTAGCAGAGAGGAGAGTCAATCTTTCTAGTATTTGGTGTCCGAAGATGCACAATCCTCGTAGAGATGAAAAGCCGGCTCCATATGCACGCGAAGCAAAGGAGTTGCTGAGGACACGCCTTATTGGTAGCCAAGTGAGTGTTCAATTGGAGTATTCTAGGAAGGTTGGCCAAGGAGGTGCAATGGATTTTGGATCAGTCTTTGTGAAGGCTGTGGAGAAAGATGCAAGTGGGCAGGTTGGGGGGAATGTTGCTGAGCTCATGGTTGCACGTGGCCTCGGCACCGTTGTTAAACATCGAGATTTTGAGGAGAGATCGCACTATTATGATGCTCTTCTTGCTGCTGAGTCGCGTGCTATTGCCGGCAAGAAAGGAATACATTCTTCCAAGGAATCCCCAGTCATGCACACAAGAGACTTGACAACTGAACCTGCCAAGAAAGCAAGCGAGTTCTTGCCATTCTTGCAGCGAAATAGGAAAATTCCTGCCATTGTGGAATATGTCCTTAGTGGTCATCGTTTTAAGCTATTTCTTCCCAAGGAAACATGCAGCATTGCCTTCTCTTTCTCAGGTGTGAGATGTCCCCGTCGTGAGGAGCCCTTTTCGGATGAAGCAATTGCAGTCATGCGGCGAAGAATAATGCAGAGAGAAGTTGAGATTGAGGTGGAGAGTGTTGACAAAACTGGAACTTTCTTGGGAACTTTATGGGAATCGGGGACCAATATGTCAATTGCCCTCGTTGGCGCTGGCCTTGCAAAATATACTCCCTTTGGCAACAGCGATAGGATTCTGGATGCTCACCTTCTTGAACTAGCTCAAAAATCTGCCAAACAGCAGAAATTGAAAATCTGGGAGAGCTATGATCAAGGACAGGAAGTTTCCAAGAAACAGAAAAAGGTGCTAAATGTTGTAGTTACAGAGATTTTGGACAGCGGTAAATTTTATGTTCAGACAACTGAGGACCAAAACACTGCCTCTATTCAGCAACAGCTTGCTTCTTTGAATCTTCAAGAATCTGATCCTGTAACCGATACTGATTTCAAGCCTACGAAGGGTGACATTGTCCTTGCTCAGTTTAGTGCAGACAATTCTTGGAACCGTGCAATGATTGTCAATGCTCCTAGAGCAGCTGTAGAATCCTCTCAAGACGAGTATGAAGTGTTCTACATTGATTACGGTAATCAAGAGGTTGTCCCTTTCAGTCAGTTACGGCCCCTCGACTCTTCTCTTGCCACTGCACCTGGCCTTGCCCAACTGTGCAGCCTTGCATATGTTAAGGTCCCAAGCTTGGAGGATAATTTTGGTGAAGAAGCAGCGGAGTACTTGAGTGAGCAAACATTGAGCAGTTCCATAAAGTTCAGGGCCTTGATTGAGGGAAGGGATTTTTCAGAAGGAAAAGTTGTTAAAGGGCAGGGAACCGGACCAGCTCTTATGGTAACTCTTGAGGCAGGTGATGATGAGATGAGTATAAATGCTGCCATGGTTCGAGAGGGACTTGCTAGCCTGGACAAAGAGAAGAAATTTTGGAAGTCTTCCGAAACCTTGAGAGAATTCCAGGATGAAGCAAGGACCTATCGGCGAGGCATGTGGGAAGATGGAGATATTGATGCTCATGTGGACAGGGCTCGTCCCATTACAAAGACTGCTGGCAAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010371 GO:0010372 GO:0010467 GO:0010468 GO:0010494 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016070 GO:0016071 GO:0016101 GO:0016102 GO:0016114 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019439 GO:0019747 GO:0019752 GO:0030054 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046394 GO:0046483 GO:0046686 GO:0046700 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05169 ko05203 map05169 map05203
Pfam Domains
Protein Families
SNase TUDOR

Protein Analysis

913

Amino Acids

101.07

Weight (kDa)

6.0

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNase PF00565 38 - 146 6.6e-07 Staphylococcal nuclease homologue
SNase PF00565 208 - 320 4.6e-14 Staphylococcal nuclease homologue
SNase PF00565 367 - 488 1.4e-06 Staphylococcal nuclease homologue
SNase PF00565 549 - 646 1.9e-14 Staphylococcal nuclease homologue
TUDOR PF00567 659 - 784 1.9e-23 Tudor domain
SNase PF00565 791 - 893 4.5e-07 Staphylococcal nuclease homologue
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AarI CACCTGC 1 cut(s) 2522
AasI GACNNNNNNGTC 1 cut(s) 1807
Acc36I ACCTGC 3 cut(s) 1309, 1522, 2522
AccB1I GGYRCC 2 cut(s) 136, 1364
AccB7I CCANNNNNTGG 1 cut(s) 535
AccI GTMKAC 1 cut(s) 475
AccII CGCG 2 cut(s) 1176, 1435
AccIII TCCGGA 1 cut(s) 592
AciI CCGC 4 cut(s) 41, 1711, 2016, 2399
AclWI GGATC 2 cut(s) 1285, 2096
AcoI YGGCCR 1 cut(s) 1252
AcsI RAATTY 7 cut(s) 707, 778, 1006, 1563, 2021, 2603, 2633
AcuI CTGAAG 3 cut(s) 33, 438, 705
AcvI CACGTG 1 cut(s) 1355
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 3 cut(s) 185, 969, 2405
AfiI CCNNNNNNNGG 9 cut(s) 180, 264, 535, 648, 889, 980, 1675, 2135, 2371
AhdI GACNNNNNGTC 1 cut(s) 420
AjnI CCWGG 4 cut(s) 140, 2323, 2586, 2637
AjuI GAANNNNNNNTTGG 2 cut(s) 1209, 1241
Alw21I GWGCWC 1 cut(s) 1344
Alw26I GTCTC 1 cut(s) 1491
AlwI GGATC 2 cut(s) 1285, 2096
AlwNI CAGNNNCTG 1 cut(s) 683
Ama87I CYCGRG 2 cut(s) 150, 630
Aor13HI TCCGGA 1 cut(s) 592
ApaI GGGCCC 1 cut(s) 637
ApoI RAATTY 7 cut(s) 707, 778, 1006, 1563, 2021, 2603, 2633
Asp700I GAANNNNTTC 2 cut(s) 387, 1462
AspLEI GCGC 2 cut(s) 139, 1829
AsuC2I CCSGG 2 cut(s) 266, 447
AsuHPI GGTGA 4 cut(s) 1874, 2150, 2399, 2546
AsuNHI GCTAGC 1 cut(s) 2582
AvaI CYCGRG 2 cut(s) 150, 630
AvaII GGWCC 6 cut(s) 435, 1800, 2044, 2362, 2504, 2652
BaeGI GKGCMC 1 cut(s) 637
BaeI ACNNNNGTAYC 2 cut(s) 48, 81
BalI TGGCCA 1 cut(s) 1254
BanI GGYRCC 2 cut(s) 136, 1364
BanII GRGCYC 5 cut(s) 174, 637, 1344, 1683, 2710
BarI GAAGNNNNNNTAC 2 cut(s) 573, 605
BauI CACGAG 2 cut(s) 102, 723
BbrPI CACGTG 1 cut(s) 1355
BbsI GAAGAC 3 cut(s) 223, 274, 2607
Bbv12I GWGCWC 1 cut(s) 1344
BbvCI CCTCAGC 2 cut(s) 456, 1193
BccI CCATC 8 cut(s) 12, 122, 152, 557, 800, 880, 1081, 2672
BceAI ACGGC 1 cut(s) 2309
BcgI CGANNNNNNTGC 4 cut(s) 857, 891, 1124, 1158
BciT130I CCWGG 4 cut(s) 142, 2325, 2588, 2639
BciVI GTATCC 1 cut(s) 49
BclI TGATCA 2 cut(s) 66, 1945
BcnI CCSGG 2 cut(s) 266, 447
BcoDI GTCTC 1 cut(s) 1491
BfaI CTAG 6 cut(s) 1088, 1113, 1242, 1895, 2205, 2583
BfmI CTRYAG 3 cut(s) 918, 978, 2214
BfoI RGCGCY 2 cut(s) 140, 1830
BfuAI ACCTGC 3 cut(s) 1309, 1522, 2522
BfuI GTATCC 1 cut(s) 49
BlpI GCTNAGC 1 cut(s) 1338
BmcAI AGTACT 1 cut(s) 2405
Bme1390I CCNGG 6 cut(s) 142, 266, 447, 2325, 2588, 2639
Bme18I GGWCC 6 cut(s) 435, 1800, 2044, 2362, 2504, 2652
BmeRI GACNNNNNGTC 1 cut(s) 420
BmeT110I CYCGRG 2 cut(s) 150, 630
BmrFI CCNGG 6 cut(s) 142, 266, 447, 2325, 2588, 2639
BmrI ACTGGG 1 cut(s) 1475
BmsI GCATC 8 cut(s) 487, 886, 1056, 1122, 1297, 1402, 1867, 2680
BmtI GCTAGC 1 cut(s) 2586
BmuI ACTGGG 1 cut(s) 1475
BpiI GAAGAC 3 cut(s) 223, 274, 2607
BpmI CTGGAG 1 cut(s) 854
Bpu10I CCTNAGC 3 cut(s) 214, 456, 1193
Bpu1102I GCTNAGC 1 cut(s) 1338
BpuEI CTTGAG 6 cut(s) 312, 896, 2211, 2428, 2546, 2647
BpuMI CCSGG 2 cut(s) 266, 447
BsaAI YACGTR 2 cut(s) 967, 1355
BsaHI GRCGYC 1 cut(s) 137
BsaWI WCCGGW 3 cut(s) 92, 592, 2501
BsaXI ACNNNNNCTCC 6 cut(s) 147, 177, 210, 240, 587, 617
Bsc4I CCNNNNNNNGG 9 cut(s) 180, 264, 535, 648, 889, 980, 1675, 2135, 2371
Bse118I RCCGGY 2 cut(s) 1159, 1445
Bse1I ACTGG 2 cut(s) 1481, 1771
Bse3DI GCAATG 4 cut(s) 507, 1272, 1635, 2193
BseAI TCCGGA 1 cut(s) 592
BseBI CCWGG 4 cut(s) 142, 2325, 2588, 2639
BseGI GGATG 6 cut(s) 23, 745, 957, 1696, 1882, 2647
BseLI CCNNNNNNNGG 9 cut(s) 180, 264, 535, 648, 889, 980, 1675, 2135, 2371
BseMI GCAATG 4 cut(s) 507, 1272, 1635, 2193
BseMII CTCAG 8 cut(s) 191, 447, 1184, 1329, 1419, 1665, 2031, 2168
BseNI ACTGG 2 cut(s) 1481, 1771
BseRI GAGGAG 5 cut(s) 168, 236, 1111, 1406, 1691
BseSI GKGCMC 1 cut(s) 637
BseYI CCCAGC 2 cut(s) 333, 973
BsgI GTGCAG 3 cut(s) 2184, 2304, 2362
Bsh1236I CGCG 2 cut(s) 1176, 1435
BshNI GGYRCC 2 cut(s) 136, 1364
BsiHKAI GWGCWC 1 cut(s) 1344
BsiHKCI CYCGRG 2 cut(s) 150, 630
BsiSI CCGG 7 cut(s) 93, 265, 446, 593, 1160, 1446, 2502
BslFI GGGAC 7 cut(s) 1055, 1650, 1813, 2261, 2348, 2589, 2697
BslI CCNNNNNNNGG 9 cut(s) 180, 264, 535, 648, 889, 980, 1675, 2135, 2371
BsmAI GTCTC 1 cut(s) 1491
BsmFI GGGAC 7 cut(s) 1055, 1650, 1813, 2261, 2348, 2589, 2697
BsoBI CYCGRG 2 cut(s) 150, 630
Bsp120I GGGCCC 1 cut(s) 633
Bsp1286I GDGCHC 5 cut(s) 174, 637, 1344, 1683, 2710
Bsp13I TCCGGA 1 cut(s) 592
Bsp143I GATC 5 cut(s) 66, 1277, 1397, 1945, 2101
Bsp1720I GCTNAGC 1 cut(s) 1338
Bsp19I CCATGG 3 cut(s) 534, 655, 2562
BspACI CCGC 4 cut(s) 41, 1711, 2016, 2399
BspCNI CTCAG 8 cut(s) 192, 448, 1185, 1330, 1420, 1664, 2032, 2167
BspEI TCCGGA 1 cut(s) 592
BspFNI CGCG 2 cut(s) 1176, 1435
BspHI TCATGA 1 cut(s) 997
BspMAI CTGCAG 1 cut(s) 922
BspMI ACCTGC 3 cut(s) 1309, 1522, 2522
BspOI GCTAGC 1 cut(s) 2586
BspPI GGATC 2 cut(s) 1285, 2096
BspQI GCTCTTC 1 cut(s) 1422
BspT107I GGYRCC 2 cut(s) 136, 1364
BsrDI GCAATG 4 cut(s) 507, 1272, 1635, 2193
BsrFI RCCGGY 2 cut(s) 1159, 1445
BsrI ACTGG 2 cut(s) 1481, 1771
BssAI RCCGGY 2 cut(s) 1159, 1445
BssMI GATC 5 cut(s) 66, 1277, 1397, 1945, 2101
BssNI GRCGYC 1 cut(s) 137
BssSI CACGAG 2 cut(s) 102, 723
BssT1I CCWWGG 7 cut(s) 438, 534, 655, 1255, 1470, 1620, 2562
Bst2BI CACGAG 2 cut(s) 102, 723
Bst2UI CCWGG 4 cut(s) 142, 2325, 2588, 2639
Bst4CI ACNGT 6 cut(s) 188, 673, 1369, 2183, 2261, 2340
Bst6I CTCTTC 4 cut(s) 396, 1074, 1422, 2311
BstACI GRCGYC 1 cut(s) 137
BstBAI YACGTR 2 cut(s) 967, 1355
BstDSI CCRYGG 3 cut(s) 534, 655, 2562
BstENI CCTNNNNNAGG 1 cut(s) 887
BstF5I GGATG 6 cut(s) 23, 745, 957, 1696, 1882, 2647
BstFNI CGCG 2 cut(s) 1176, 1435
BstH2I RGCGCY 2 cut(s) 140, 1830
BstHHI GCGC 2 cut(s) 139, 1829
BstKTI GATC 5 cut(s) 69, 1280, 1400, 1948, 2104
BstMAI GTCTC 1 cut(s) 1491
BstMBI GATC 5 cut(s) 66, 1277, 1397, 1945, 2101
BstMWI GCNNNNNNNGC 8 cut(s) 11, 1169, 1178, 1421, 1523, 1546, 1835, 2207
BstNI CCWGG 4 cut(s) 142, 2325, 2588, 2639
BstNSI RCATGY 2 cut(s) 1632, 2671
BstSCI CCNGG 6 cut(s) 140, 264, 445, 2323, 2586, 2637
BstSFI CTRYAG 3 cut(s) 918, 978, 2214
BstSLI GKGCMC 1 cut(s) 637
BstSNI TACGTA 1 cut(s) 967
BstUI CGCG 2 cut(s) 1176, 1435
BstV2I GAAGAC 3 cut(s) 223, 274, 2607
BsuI GTATCC 1 cut(s) 49
BtgI CCRYGG 3 cut(s) 534, 655, 2562
BtsCI GGATG 6 cut(s) 23, 745, 957, 1696, 1882, 2647
BtsI GCAGTG 2 cut(s) 2052, 2316
BtsIMutI CAGTG 3 cut(s) 798, 2052, 2316
BveI ACCTGC 3 cut(s) 1309, 1522, 2522
CaiI CAGNNNCTG 1 cut(s) 683
CciI TCATGA 1 cut(s) 997
CfoI GCGC 2 cut(s) 139, 1829
Cfr10I RCCGGY 2 cut(s) 1159, 1445
Csp6I GTAC 3 cut(s) 184, 968, 2404
CviQI GTAC 3 cut(s) 184, 968, 2404
DinI GGCGCC 1 cut(s) 138
DpnI GATC 5 cut(s) 68, 1279, 1399, 1947, 2103
DpnII GATC 5 cut(s) 66, 1277, 1397, 1945, 2101
DrdI GACNNNNNNGTC 1 cut(s) 1807
DriI GACNNNNNGTC 1 cut(s) 420
DseDI GACNNNNNNGTC 1 cut(s) 1807
EaeI YGGCCR 1 cut(s) 1252
Eam1104I CTCTTC 4 cut(s) 396, 1074, 1422, 2311
Eam1105I GACNNNNNGTC 1 cut(s) 420
EarI CTCTTC 4 cut(s) 396, 1074, 1422, 2311
Ecl136II GAGCTC 1 cut(s) 1342
Eco105I TACGTA 1 cut(s) 967
Eco130I CCWWGG 7 cut(s) 438, 534, 655, 1255, 1470, 1620, 2562
Eco24I GRGCYC 5 cut(s) 174, 637, 1344, 1683, 2710
Eco47I GGWCC 6 cut(s) 435, 1800, 2044, 2362, 2504, 2652
Eco53kI GAGCTC 1 cut(s) 1342
Eco57I CTGAAG 3 cut(s) 33, 438, 705
Eco72I CACGTG 1 cut(s) 1355
Eco88I CYCGRG 2 cut(s) 150, 630
EcoICRI GAGCTC 1 cut(s) 1342
EcoNI CCTNNNNNAGG 1 cut(s) 887
EcoO109I RGGNCCY 4 cut(s) 634, 2362, 2445, 2652
EcoRI GAATTC 1 cut(s) 2633
EcoRII CCWGG 4 cut(s) 140, 2323, 2586, 2637
EcoT14I CCWWGG 7 cut(s) 438, 534, 655, 1255, 1470, 1620, 2562
EcoT38I GRGCYC 5 cut(s) 174, 637, 1344, 1683, 2710
EgeI GGCGCC 1 cut(s) 138
EheI GGCGCC 1 cut(s) 138
ErhI CCWWGG 7 cut(s) 438, 534, 655, 1255, 1470, 1620, 2562
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 7 cut(s) 1055, 1650, 1813, 2261, 2348, 2589, 2697
FauNDI CATATG 2 cut(s) 1168, 2353
FbaI TGATCA 2 cut(s) 66, 1945
FblI GTMKAC 1 cut(s) 475
FokI GGATG 6 cut(s) 30, 752, 964, 1703, 1889, 2654
FriOI GRGCYC 5 cut(s) 174, 637, 1344, 1683, 2710
FspBI CTAG 6 cut(s) 1088, 1113, 1242, 1895, 2205, 2583
GlaI GCGC 2 cut(s) 138, 1828
GsaI CCCAGC 2 cut(s) 337, 977
GsuI CTGGAG 1 cut(s) 854
HaeII RGCGCY 2 cut(s) 140, 1830
HapII CCGG 7 cut(s) 93, 265, 446, 593, 1160, 1446, 2502
HhaI GCGC 2 cut(s) 139, 1829
Hin1I GRCGYC 1 cut(s) 137
Hin6I GCGC 2 cut(s) 137, 1827
HinP1I GCGC 2 cut(s) 137, 1827
HincII GTYRAC 2 cut(s) 766, 1759
HindII GTYRAC 2 cut(s) 766, 1759
HindIII AAGCTT 2 cut(s) 314, 2368
HpaII CCGG 7 cut(s) 93, 265, 446, 593, 1160, 1446, 2502
HphI GGTGA 4 cut(s) 1874, 2150, 2399, 2546
Hpy166II GTNNAC 8 cut(s) 241, 476, 583, 766, 957, 1085, 1759, 2701
Hpy188I TCNGA 9 cut(s) 201, 776, 817, 1128, 1690, 2034, 2101, 2473, 2620
Hpy8I GTNNAC 8 cut(s) 241, 476, 583, 766, 957, 1085, 1759, 2701
Hpy99I CGWCG 1 cut(s) 1674
HpyAV CCTTC 9 cut(s) 31, 413, 1240, 1285, 1651, 1895, 2128, 2454, 2468
HpyCH4III ACNGT 6 cut(s) 188, 673, 1369, 2183, 2261, 2340
HpyCH4IV ACGT 2 cut(s) 966, 1354
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 1169, 1178, 1421, 1523, 1546, 1835, 2207
HpySE526I ACGT 2 cut(s) 966, 1354
Hsp92I GRCGYC 1 cut(s) 137
HspAI GCGC 2 cut(s) 137, 1827
KasI GGCGCC 1 cut(s) 136
Kpn2I TCCGGA 1 cut(s) 592
KroI GCCGGC 2 cut(s) 1159, 1445
KroNI GCCGGC 2 cut(s) 1161, 1447
Ksp22I TGATCA 2 cut(s) 66, 1945
Kzo9I GATC 5 cut(s) 66, 1277, 1397, 1945, 2101
LguI GCTCTTC 1 cut(s) 1422
LmnI GCTCC 6 cut(s) 550, 651, 835, 1168, 1678, 2206
LweI GCATC 8 cut(s) 487, 886, 1056, 1122, 1297, 1402, 1867, 2680
MaeI CTAG 6 cut(s) 1088, 1113, 1242, 1895, 2205, 2583
MaeII ACGT 2 cut(s) 966, 1354
MaeIII GTNAC 6 cut(s) 43, 1996, 2107, 2138, 2289, 2518
MalI GATC 5 cut(s) 68, 1279, 1399, 1947, 2103
MboI GATC 5 cut(s) 66, 1277, 1397, 1945, 2101
MfeI CAATTG 3 cut(s) 1229, 1698, 1812
MhlI GDGCHC 5 cut(s) 174, 637, 1344, 1683, 2710
MlsI TGGCCA 1 cut(s) 1254
MluNI TGGCCA 1 cut(s) 1254
Mly113I GGCGCC 1 cut(s) 137
MlyI GAGTC 4 cut(s) 514, 1110, 1439, 2297
Mox20I TGGCCA 1 cut(s) 1254
MroI TCCGGA 1 cut(s) 592
MroNI GCCGGC 2 cut(s) 1159, 1445
MroXI GAANNNNTTC 2 cut(s) 387, 1462
MscI TGGCCA 1 cut(s) 1254
MseI TTAA 4 cut(s) 1374, 1605, 2358, 2487
MslI CAYNNNNRTG 2 cut(s) 1052, 1407
Msp20I TGGCCA 1 cut(s) 1254
MspA1I CMGCKG 3 cut(s) 2016, 2213, 2399
MspI CCGG 7 cut(s) 93, 265, 446, 593, 1160, 1446, 2502
MspR9I CCNGG 6 cut(s) 142, 266, 447, 2325, 2588, 2639
MunI CAATTG 3 cut(s) 1229, 1698, 1812
MvaI CCWGG 4 cut(s) 142, 2325, 2588, 2639
MvnI CGCG 2 cut(s) 1176, 1435
MwoI GCNNNNNNNGC 8 cut(s) 11, 1169, 1178, 1421, 1523, 1546, 1835, 2207
NaeI GCCGGC 2 cut(s) 1161, 1447
NarI GGCGCC 1 cut(s) 137
NciI CCSGG 2 cut(s) 266, 447
NcoI CCATGG 3 cut(s) 534, 655, 2562
NdeI CATATG 2 cut(s) 1168, 2353
NdeII GATC 5 cut(s) 66, 1277, 1397, 1945, 2101
NgoMIV GCCGGC 2 cut(s) 1159, 1445
NheI GCTAGC 1 cut(s) 2582
NmeAIII GCCGAG 1 cut(s) 1341
NmuCI GTSAC 1 cut(s) 2138
NspI RCATGY 2 cut(s) 1632, 2671
PagI TCATGA 1 cut(s) 997
PaqCI CACCTGC 1 cut(s) 2522
PciSI GCTCTTC 1 cut(s) 1422
PdiI GCCGGC 2 cut(s) 1161, 1447
PdmI GAANNNNTTC 2 cut(s) 387, 1462
PflFI GACNNNGTC 1 cut(s) 2144
PflMI CCANNNNNTGG 1 cut(s) 535
PfoI TCCNGGA 2 cut(s) 264, 2637
PleI GAGTC 4 cut(s) 513, 1109, 1438, 2297
PluTI GGCGCC 1 cut(s) 140
PmaCI CACGTG 1 cut(s) 1355
PmlI CACGTG 1 cut(s) 1355
PpsI GAGTC 4 cut(s) 513, 1109, 1438, 2297
Ppu21I YACGTR 2 cut(s) 967, 1355
PpuMI RGGWCCY 2 cut(s) 2362, 2652
PsiI TTATAA 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 1344
Psp5II RGGWCCY 2 cut(s) 2362, 2652
Psp6I CCWGG 4 cut(s) 140, 2323, 2586, 2637
PspCI CACGTG 1 cut(s) 1355
PspFI CCCAGC 2 cut(s) 333, 973
PspGI CCWGG 4 cut(s) 140, 2323, 2586, 2637
PspOMI GGGCCC 1 cut(s) 633
PspPPI RGGWCCY 2 cut(s) 2362, 2652
PsrI GAACNNNNNNTAC 2 cut(s) 2228, 2260
PstI CTGCAG 1 cut(s) 922
PstNI CAGNNNCTG 1 cut(s) 683
PsyI GACNNNGTC 1 cut(s) 2144
PvuII CAGCTG 1 cut(s) 2213
RsaI GTAC 3 cut(s) 185, 969, 2405
RsaNI GTAC 3 cut(s) 184, 968, 2404
RseI CAYNNNNRTG 2 cut(s) 1052, 1407
SacI GAGCTC 1 cut(s) 1344
SapI GCTCTTC 1 cut(s) 1422
SaqAI TTAA 4 cut(s) 1374, 1605, 2358, 2487
Sau3AI GATC 5 cut(s) 66, 1277, 1397, 1945, 2101
ScaI AGTACT 1 cut(s) 2405
SchI GAGTC 4 cut(s) 514, 1110, 1439, 2297
ScrFI CCNGG 6 cut(s) 142, 266, 447, 2325, 2588, 2639
SduI GDGCHC 5 cut(s) 174, 637, 1344, 1683, 2710
SfaNI GCATC 8 cut(s) 487, 886, 1056, 1122, 1297, 1402, 1867, 2680
SfcI CTRYAG 3 cut(s) 918, 978, 2214
SfoI GGCGCC 1 cut(s) 138
SinI GGWCC 6 cut(s) 435, 1800, 2044, 2362, 2504, 2652
SmiMI CAYNNNNRTG 2 cut(s) 1052, 1407
SmlI CTYRAG 6 cut(s) 327, 911, 2226, 2407, 2525, 2626
SmoI CTYRAG 6 cut(s) 327, 911, 2226, 2407, 2525, 2626
SnaBI TACGTA 1 cut(s) 967
SsiI CCGC 4 cut(s) 41, 1711, 2016, 2399
SspDI GGCGCC 1 cut(s) 136
SspMI CTAG 6 cut(s) 1088, 1113, 1242, 1895, 2205, 2583
SstI GAGCTC 1 cut(s) 1344
StyD4I CCNGG 6 cut(s) 140, 264, 445, 2323, 2586, 2637
StyI CCWWGG 7 cut(s) 438, 534, 655, 1255, 1470, 1620, 2562
TaaI ACNGT 6 cut(s) 188, 673, 1369, 2183, 2261, 2340
TaiI ACGT 2 cut(s) 969, 1357
TaqI TCGA 6 cut(s) 399, 867, 872, 1381, 2301, 2569
TatI WGTACW 1 cut(s) 2403
TauI GCSGC 1 cut(s) 1714
Tru1I TTAA 4 cut(s) 1374, 1605, 2358, 2487
Tru9I TTAA 4 cut(s) 1374, 1605, 2358, 2487
TscAI CASTG 3 cut(s) 798, 2059, 2323
TseFI GTSAC 1 cut(s) 2138
Tsp45I GTSAC 1 cut(s) 2138
TspDTI ATGAA 6 cut(s) 659, 986, 1167, 1707, 2253, 2658
TspGWI ACGGA 1 cut(s) 599
TspRI CASTG 3 cut(s) 798, 2059, 2323
Tth111I GACNNNGTC 1 cut(s) 2144
Van91I CCANNNNNTGG 1 cut(s) 535
VpaK11BI GGWCC 6 cut(s) 435, 1800, 2044, 2362, 2504, 2652
XagI CCTNNNNNAGG 1 cut(s) 887
XapI RAATTY 7 cut(s) 707, 778, 1006, 1563, 2021, 2603, 2633
XceI RCATGY 2 cut(s) 1632, 2671
XmiI GTMKAC 1 cut(s) 475
XmnI GAANNNNTTC 2 cut(s) 387, 1462
XspI CTAG 6 cut(s) 1088, 1113, 1242, 1895, 2205, 2583
ZrmI AGTACT 1 cut(s) 2405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.