Rorug06G0272400

Staphylococcal nuclease domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001011
Physical Location & Seq
Forward (+)
41975523 .. 41978662
3140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0272400.1

Sequence Viewer

Length: 1176 bp
ATGGTGAGCTTAAGAAGACACAAACGCTCAAGCCTATCCCCTGTCCTTGCAGCTGGAAGTAGTTATGTTCTAGCTCCACTTCCTGGGTTCACTGACAGCGAAATTGACACTCATGCAAAACTTGATTGTGTGCATCCCATGCCTTTGAACGATGAAGATGAACCAGAGGAGCTGAACTTACCCAAAGAGACCGAGACAGTTTCAGTACTAAACAGTGCCAAGAGGAAAATGAGGAAGATTGATGAGTTGATGAAGATTACTGAAACTGAGGTCATCGAGTCACCTAAAAATTATCAGGTTGACTTGAAAAAACCGGTGCGTCGATGGAAAAAAGTGCTGGAAAAGAAGTCCCCGAAGGTGTCAGAGGTTACCAAAGATGAACTTGAGAAGATAGTGAAGAAACCAAGGACAAACTCTGACTTCTACCTGGAGGAACTGGATCTGCTCCACAAGAAGAAGGAAAATGAGAGCAAGCTAACGACCGAGCTGAACAAGACCTGCCAAAAAGAGTTGAAAGAGGCTGAAGACAATAATCATGCCTTCTCGTGGGATTACTGTCTCCTGGATAAGTCCTATGTCCAGTCTTTGGAAAATATTTGGCTAGAAGGTGAAGACCAGAATGTGGATGACGAGGGCACTGATACATTGGGGAATGAAGAAGCGAAGAATAAGATTGACATCTCGGAAGATTGGGTGAATAAGCTAAAGGAGAAGAAGGGACTGCAAAAGGCTGAGCTGGACGCTGCAAAGGTGGAAACAGAGAAGCTGCGCAGATATGTTGTTGAGCTCGACAGGGTGGCTGTGGACATGGCCAAAGCTCAAGCTGCTGCCATCAAAGCTGAGAAGGATGAGGTTGAAGAGAAAAATGAAGAAATGAAGAACAAGATTGACATCTTGAAAACCATGGTGGAAAAACTAAAGGACAAGAAGATACTGCAAAAGTCTGAGACTGAAGCTGCAATGGTGGCTTGTGAGAAGCTATGCAGAGATGTAGAGCTTAGCAGGGTGGCTGTGGACATGGCCAAAGCTGAAACTTCTACCCTCAAAGCTGAGAAGGACAAGCTTGAAGAGCAAAATGAAATCGAGATGAGGAAAAAGAGGAAATATATTGCTTCTCTGATCTCTGAGCTGAAAAGTTGCTACTCCTTCCTGACAGATCCGAAGATGAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010371 GO:0010372 GO:0010467 GO:0010468 GO:0010494 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016070 GO:0016071 GO:0016101 GO:0016102 GO:0016114 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019439 GO:0019747 GO:0019752 GO:0030054 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046394 GO:0046483 GO:0046686 GO:0046700 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05169 ko05203 map05169 map05203
Pfam Domains
Protein Families
SNase TUDOR

Protein Analysis

391

Amino Acids

44.97

Weight (kDa)

5.5

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 770
Acc36I ACCTGC 1 cut(s) 506
AccB7I CCANNNNNTGG 3 cut(s) 83, 586, 622
AclWI GGATC 2 cut(s) 447, 1151
AcoI YGGCCR 2 cut(s) 810, 1020
AcuI CTGAAG 2 cut(s) 543, 972
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 4 cut(s) 83, 546, 586, 622
AflII CTTAAG 1 cut(s) 10
AgeI ACCGGT 1 cut(s) 313
AgsI TTSAA 6 cut(s) 148, 307, 514, 857, 898, 1067
AjnI CCWGG 3 cut(s) 82, 426, 561
Alw21I GWGCWC 2 cut(s) 789, 1172
Alw26I GTCTC 4 cut(s) 182, 188, 563, 941
AlwI GGATC 2 cut(s) 447, 1151
AoxI GGCC 2 cut(s) 810, 1020
ApeKI GCWGC 6 cut(s) 50, 743, 766, 824, 827, 956
AsiGI ACCGGT 1 cut(s) 313
AspLEI GCGC 1 cut(s) 771
AsuHPI GGTGA 4 cut(s) 16, 273, 620, 706
BaeGI GKGCMC 1 cut(s) 638
BalI TGGCCA 2 cut(s) 812, 1022
BanII GRGCYC 2 cut(s) 789, 1172
BauI CACGAG 1 cut(s) 544
BbsI GAAGAC 3 cut(s) 22, 531, 618
Bbv12I GWGCWC 2 cut(s) 789, 1172
BbvI GCAGC 6 cut(s) 62, 730, 753, 811, 814, 943
BccI CCATC 2 cut(s) 318, 839
BciT130I CCWGG 3 cut(s) 84, 428, 563
BcoDI GTCTC 4 cut(s) 182, 188, 563, 941
BfaI CTAG 2 cut(s) 71, 602
BfrI CTTAAG 1 cut(s) 10
BfuAI ACCTGC 1 cut(s) 506
BisI GCNGC 6 cut(s) 51, 744, 767, 825, 828, 957
BlpI GCTNAGC 2 cut(s) 732, 998
BlsI GCNGC 6 cut(s) 52, 745, 768, 826, 829, 958
BmcAI AGTACT 1 cut(s) 207
Bme1390I CCNGG 3 cut(s) 84, 428, 563
BmrFI CCNGG 3 cut(s) 84, 428, 563
BmsI GCATC 1 cut(s) 142
BpiI GAAGAC 3 cut(s) 22, 531, 618
BpmI CTGGAG 1 cut(s) 449
Bpu1102I GCTNAGC 2 cut(s) 732, 998
BpuEI CTTGAG 3 cut(s) 13, 404, 804
BsaBI GATNNNNATC 2 cut(s) 677, 890
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 3 cut(s) 83, 404, 903
BsaWI WCCGGW 1 cut(s) 313
Bsc4I CCNNNNNNNGG 4 cut(s) 83, 546, 586, 622
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 2 cut(s) 441, 580
Bse3DI GCAATG 1 cut(s) 966
Bse8I GATNNNNATC 2 cut(s) 677, 890
BseBI CCWGG 3 cut(s) 84, 428, 563
BseDI CCNNGG 3 cut(s) 83, 404, 903
BseGI GGATG 3 cut(s) 133, 631, 853
BseJI GATNNNNATC 2 cut(s) 677, 890
BseLI CCNNNNNNNGG 4 cut(s) 83, 546, 586, 622
BseMI GCAATG 1 cut(s) 966
BseMII CTCAG 6 cut(s) 258, 723, 831, 936, 1041, 1116
BseNI ACTGG 2 cut(s) 441, 580
BseRI GAGGAG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 6 cut(s) 62, 730, 753, 811, 814, 943
Bsh1285I CGRYCG 1 cut(s) 483
BshFI GGCC 2 cut(s) 812, 1022
BshTI ACCGGT 1 cut(s) 313
BsiEI CGRYCG 1 cut(s) 483
BsiHKAI GWGCWC 2 cut(s) 789, 1172
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 2 cut(s) 334, 732
BslI CCNNNNNNNGG 4 cut(s) 83, 546, 586, 622
BsmAI GTCTC 4 cut(s) 182, 188, 563, 941
BsmFI GGGAC 2 cut(s) 334, 732
BsnI GGCC 2 cut(s) 812, 1022
Bso31I GGTCTC 1 cut(s) 182
Bsp1286I GDGCHC 3 cut(s) 638, 789, 1172
Bsp143I GATC 3 cut(s) 439, 1119, 1156
Bsp1720I GCTNAGC 2 cut(s) 732, 998
Bsp19I CCATGG 1 cut(s) 903
BspANI GGCC 2 cut(s) 812, 1022
BspCNI CTCAG 6 cut(s) 259, 724, 832, 937, 1042, 1117
BspMI ACCTGC 1 cut(s) 506
BspPI GGATC 2 cut(s) 447, 1151
BspQI GCTCTTC 1 cut(s) 1062
BspTI CTTAAG 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 966
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 2 cut(s) 441, 580
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 3 cut(s) 83, 404, 903
BssMI GATC 3 cut(s) 439, 1119, 1156
BssSI CACGAG 1 cut(s) 544
BssT1I CCWWGG 2 cut(s) 404, 903
Bst2BI CACGAG 1 cut(s) 544
Bst2UI CCWGG 3 cut(s) 84, 428, 563
Bst4CI ACNGT 3 cut(s) 199, 215, 557
Bst6I CTCTTC 2 cut(s) 852, 1062
BstAFI CTTAAG 1 cut(s) 10
BstAPI GCANNNNNTGC 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 473
BstDEI CTNAG 7 cut(s) 267, 732, 840, 945, 998, 1050, 1125
BstDSI CCRYGG 1 cut(s) 903
BstEII GGTNACC 1 cut(s) 367
BstF5I GGATG 3 cut(s) 133, 631, 853
BstHHI GCGC 1 cut(s) 771
BstKTI GATC 3 cut(s) 442, 1122, 1159
BstMAI GTCTC 4 cut(s) 182, 188, 563, 941
BstMBI GATC 3 cut(s) 439, 1119, 1156
BstMCI CGRYCG 1 cut(s) 483
BstMWI GCNNNNNNNGC 5 cut(s) 139, 824, 836, 965, 1069
BstNI CCWGG 3 cut(s) 84, 428, 563
BstPI GGTNACC 1 cut(s) 367
BstSCI CCNGG 3 cut(s) 82, 426, 561
BstSLI GKGCMC 1 cut(s) 638
BstV1I GCAGC 6 cut(s) 62, 730, 753, 811, 814, 943
BstV2I GAAGAC 3 cut(s) 22, 531, 618
BstX2I RGATCY 2 cut(s) 439, 1156
BstYI RGATCY 2 cut(s) 439, 1156
BsuRI GGCC 2 cut(s) 812, 1022
BtgI CCRYGG 1 cut(s) 903
BtsCI GGATG 3 cut(s) 133, 631, 853
BtsIMutI CAGTG 3 cut(s) 90, 220, 636
BveI ACCTGC 1 cut(s) 506
Cac8I GCNNGC 1 cut(s) 473
CfoI GCGC 1 cut(s) 771
Cfr10I RCCGGY 1 cut(s) 313
CseI GACGC 2 cut(s) 308, 749
Csp6I GTAC 1 cut(s) 206
CspAI ACCGGT 1 cut(s) 313
CviAII CATG 6 cut(s) 113, 139, 536, 808, 904, 1018
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 7 cut(s) 267, 732, 840, 945, 998, 1050, 1125
DpnI GATC 3 cut(s) 441, 1121, 1158
DpnII GATC 3 cut(s) 439, 1119, 1156
EaeI YGGCCR 2 cut(s) 810, 1020
Eam1104I CTCTTC 2 cut(s) 852, 1062
EarI CTCTTC 2 cut(s) 852, 1062
Ecl136II GAGCTC 2 cut(s) 787, 1170
Eco130I CCWWGG 2 cut(s) 404, 903
Eco24I GRGCYC 2 cut(s) 789, 1172
Eco31I GGTCTC 1 cut(s) 182
Eco53kI GAGCTC 2 cut(s) 787, 1170
Eco57I CTGAAG 2 cut(s) 543, 972
Eco91I GGTNACC 1 cut(s) 367
EcoICRI GAGCTC 2 cut(s) 787, 1170
EcoO65I GGTNACC 1 cut(s) 367
EcoRII CCWGG 3 cut(s) 82, 426, 561
EcoT14I CCWWGG 2 cut(s) 404, 903
EcoT38I GRGCYC 2 cut(s) 789, 1172
ErhI CCWWGG 2 cut(s) 404, 903
FaeI CATG 6 cut(s) 116, 142, 539, 811, 907, 1021
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FaqI GGGAC 2 cut(s) 334, 732
FatI CATG 6 cut(s) 112, 138, 535, 807, 903, 1017
Fnu4HI GCNGC 6 cut(s) 51, 744, 767, 825, 828, 957
FokI GGATG 3 cut(s) 120, 638, 860
FriOI GRGCYC 2 cut(s) 789, 1172
Fsp4HI GCNGC 6 cut(s) 51, 744, 767, 825, 828, 957
FspBI CTAG 2 cut(s) 71, 602
FspI TGCGCA 1 cut(s) 770
GlaI GCGC 1 cut(s) 770
GluI GCNGC 6 cut(s) 51, 744, 767, 825, 828, 957
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 2 cut(s) 812, 1022
HapII CCGG 1 cut(s) 314
HgaI GACGC 2 cut(s) 308, 749
HhaI GCGC 1 cut(s) 771
Hin1II CATG 6 cut(s) 116, 142, 539, 811, 907, 1021
Hin6I GCGC 1 cut(s) 769
HinP1I GCGC 1 cut(s) 769
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 1061
HinfI GANTC 1 cut(s) 278
HpaII CCGG 1 cut(s) 314
HphI GGTGA 4 cut(s) 16, 273, 620, 706
Hpy166II GTNNAC 4 cut(s) 90, 301, 805, 1015
Hpy188I TCNGA 7 cut(s) 364, 418, 685, 946, 1119, 1126, 1161
Hpy188III TCNNGA 4 cut(s) 895, 1084, 1150, 1173
Hpy8I GTNNAC 4 cut(s) 90, 301, 805, 1015
Hpy99I CGWCG 1 cut(s) 324
HpyAV CCTTC 8 cut(s) 349, 451, 550, 599, 709, 838, 1048, 1156
HpyCH4III ACNGT 3 cut(s) 199, 215, 557
HpyCH4V TGCA 8 cut(s) 50, 116, 133, 724, 746, 937, 959, 984
HpyF10VI GCNNNNNNNGC 5 cut(s) 139, 824, 836, 965, 1069
HpyF3I CTNAG 7 cut(s) 267, 732, 840, 945, 998, 1050, 1125
Hsp92II CATG 6 cut(s) 116, 142, 539, 811, 907, 1021
HspAI GCGC 1 cut(s) 769
Kzo9I GATC 3 cut(s) 439, 1119, 1156
LguI GCTCTTC 1 cut(s) 1062
LmnI GCTCC 3 cut(s) 79, 169, 450
Lsp1109I GCAGC 6 cut(s) 62, 730, 753, 811, 814, 943
LweI GCATC 1 cut(s) 142
MaeI CTAG 2 cut(s) 71, 602
MaeIII GTNAC 2 cut(s) 279, 367
MalI GATC 3 cut(s) 441, 1121, 1158
MboI GATC 3 cut(s) 439, 1119, 1156
MflI RGATCY 2 cut(s) 439, 1156
MhlI GDGCHC 3 cut(s) 638, 789, 1172
MlsI TGGCCA 2 cut(s) 812, 1022
MluCI AATT 2 cut(s) 102, 289
MluNI TGGCCA 2 cut(s) 812, 1022
MlyI GAGTC 1 cut(s) 287
Mox20I TGGCCA 2 cut(s) 812, 1022
MscI TGGCCA 2 cut(s) 812, 1022
MseI TTAA 1 cut(s) 11
Msp20I TGGCCA 2 cut(s) 812, 1022
MspA1I CMGCKG 1 cut(s) 53
MspCI CTTAAG 1 cut(s) 10
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 3 cut(s) 84, 428, 563
MvaI CCWGG 3 cut(s) 84, 428, 563
MwoI GCNNNNNNNGC 5 cut(s) 139, 824, 836, 965, 1069
NcoI CCATGG 1 cut(s) 903
NdeII GATC 3 cut(s) 439, 1119, 1156
NlaIII CATG 6 cut(s) 116, 142, 539, 811, 907, 1021
NmuCI GTSAC 1 cut(s) 279
NsbI TGCGCA 1 cut(s) 770
PciSI GCTCTTC 1 cut(s) 1062
PflMI CCANNNNNTGG 3 cut(s) 83, 586, 622
PfoI TCCNGGA 1 cut(s) 561
PinAI ACCGGT 1 cut(s) 313
PkrI GCNGC 6 cut(s) 52, 745, 768, 826, 829, 958
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp124BI GAGCTC 2 cut(s) 789, 1172
Psp6I CCWGG 3 cut(s) 82, 426, 561
PspEI GGTNACC 1 cut(s) 367
PspGI CCWGG 3 cut(s) 82, 426, 561
PsuI RGATCY 2 cut(s) 439, 1156
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SacI GAGCTC 2 cut(s) 789, 1172
SapI GCTCTTC 1 cut(s) 1062
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 6 cut(s) 51, 744, 767, 825, 828, 957
Sau3AI GATC 3 cut(s) 439, 1119, 1156
ScaI AGTACT 1 cut(s) 207
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 3 cut(s) 84, 428, 563
SduI GDGCHC 3 cut(s) 638, 789, 1172
SfaNI GCATC 1 cut(s) 142
SmlI CTYRAG 4 cut(s) 10, 28, 383, 819
SmoI CTYRAG 4 cut(s) 10, 28, 383, 819
Sse9I AATT 2 cut(s) 102, 289
SspI AATATT 1 cut(s) 595
SspMI CTAG 2 cut(s) 71, 602
SstI GAGCTC 2 cut(s) 789, 1172
StyD4I CCNGG 3 cut(s) 82, 426, 561
StyI CCWWGG 2 cut(s) 404, 903
TaaI ACNGT 3 cut(s) 199, 215, 557
TaqI TCGA 4 cut(s) 276, 322, 789, 1083
TaqII GACCGA 2 cut(s) 206, 497
TasI AATT 2 cut(s) 102, 289
TatI WGTACW 1 cut(s) 205
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 3 cut(s) 97, 220, 643
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 6 cut(s) 50, 743, 766, 824, 827, 956
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 8 cut(s) 168, 174, 266, 393, 669, 882, 890, 1092
TspRI CASTG 3 cut(s) 97, 220, 643
Van91I CCANNNNNTGG 3 cut(s) 83, 586, 622
Vha464I CTTAAG 1 cut(s) 10
XspI CTAG 2 cut(s) 71, 602
ZrmI AGTACT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.