Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Reverse (-)

4154248 .. 4158177

Gene Structure 3930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46554

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1968 bp

ATGTCCACTACTCCGGCGCCCTCCTCGCCGCCGACCAACACCACCTCCCCACCACCCGCCGCACCGGCCCCCACAACCCCAAGCGCTCCTCCGCCAACAACCCCAAGCGCTCCTCCGCCAACAACTCCCGCCACTCCTCCGCCGACGACCCCCAGCGCGCCGCCGCCCGCGACTCCGGCATCCCCACCGCCGCCTTCACCCCCAGCGCCCTCCACCCCAGCTCCGACATCTCCGGGGTCCTCGCCGCCGCCGCCGTCCACCCCAACCGTCACATCGCCGCCTCCCCCCAAAACGCCGTCGACGAACAAGAGCCCTCCGCCGCCCAAGTCGCCGTCGACAACACCGTCGCCGCCGTCATCGTCATCGGGATTGGATACTGGGGTTATAGTGGGAATTGCTGTTGGGGCTGTGGCGATTCTAGTGGTGCTCAGTCTTTGCTGCATTTTTTGCTCCAAGAAGAAGAGGAGAAGAAGAGAGGAGCCTGTCTATTATGTGCCTCCGCCGCCGCCTCCAACCGGGCCTAAAGGCGAAATTTACTACGGTCCACCACGCCCGCATCAAAATACTCCTCCTTCACCTGCAGATCATCATGTAATCACAATGCCTAAGCCACCTCCTGCACAAGCTGTAGCATCCAGGCCACCGCCCTCGCCAGGATATACACCGCCACCGCAGCCATACAGCAGTGGAGGTTCTGGTTCCAATTATTCAGGGTCTGAAACTGCACTCCCACCACCTCCACCACCGGGGTATTCCTTGGGATTCTCTAAAAGCACGTTTACTTATGAGGAACTGGCTTTGGCAACAGAAGGGTTCTCGGATTCCAATCTCCTTGGACAGGGTGGGTTTGGATATGTTCACAAAGGAGTTCTTCCCAATGGGAAGGAAGTAGCGGTCAAGCAGCTGAAGGCTGGAAGTGGGCAAGGGGAACGTGAATTCCAGGCAGAAGTTGAAATTATTAGCCGTGTACATCACAGACATCTGGTTTCGCTGGTTGGATACTGCATGACTGGATCCGAGAGACTACTTGTCTATGAATTTGTTCCAAATAACACTATGGAGTTCCACTTACATGGAAAAGGGAGACCTACCATGGATTGGTCCACAAGACTGAAAATCGCTTTAGGATCTGCAAAAGGACTGGCATATCTTCATGAGGATTGTCATCCTAAAATCATTCATCGTGATATCAAAGCAGCTAATATACTTTTGGATTTCAAGTTTGAGTGCAAGGTTGCAGACTTTGGTCTTGCCAAGCTTTCTTCTGATCTTAATACTCATGTTTCCACCCGAGTGATGGGGACTTTTGGGTATCTAGCTCCAGAATATGCTTCTAGTGGAAAACTCACAGACAAGTCAGATGTTTTCTCATTCGGGGTTATGCTTTTGGAGTTGATTACTGGACGCCGCCCAGTTGACGCATCTCATACGTACATAGAGGACAGTTTGGTAGAGTGGGCAAGGCCCGTTCTGACTCGAGCTTTGGAATCAGATGACTTTGATGAACTGGTTGATCCTAGACTGCAGAATAGTTTTGACCACAATGAGATGGCTCGCATGGTTGCTTGTGCTGCAGCTTGTGTACGACATTCTGCAAGGCGTCGACCACGAATGAGTCAGGTTGTCCGTGCTTTAGAGGGAGATGTGTCTCTGTCTGATCTGAACGAAGGAATCAGGCCTGGGCATAGCAGTGTCTACAGTTCCCATGGAAGCTCAGACTATGACTCAAGGCCTTATGACACAAAGCAACGCAATCTGGATATGATAAACCACAGGAAGATGGCATTGGAAAGCCAGGAGTACGGCGCTAGTAGCGAGTACAGTGGTGGTCGCACCACCAGCGAGTATGGTTTGAACCCATCTGGTTCAAGCAGTGAAGGCCAACGAACCCGGGAAACCACCAGAGAAATGGAGCTGGGAAAGATGAATAAGAACAATCGAGGTTACAGTGGAAGCTCCGAGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

655

Amino Acids

69.86

Weight (kDa)

8.26

Isoelectric Point (pI)

67.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	274 - 478	3.2e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	276 - 545	8e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	586
AasI	GACNNNNNNGTC	1 cut(s)	343
Acc36I	ACCTGC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	16
AccB7I	CCANNNNNTGG	1 cut(s)	1098
AccI	GTMKAC	4 cut(s)	299, 335, 1603, 1695
AccII	CGCG	2 cut(s)	158, 170
AclWI	GGATC	4 cut(s)	1008, 1021, 1135, 1508
AcsI	RAATTY	3 cut(s)	531, 935, 1037
AcuI	CTGAAG	1 cut(s)	926
AcyI	GRCGYC	3 cut(s)	17, 1405, 1600
AfaI	GTAC	5 cut(s)	969, 1433, 1584, 1802, 1820
AfeI	AGCGCT	2 cut(s)	85, 109
AfiI	CCNNNNNNNGG	6 cut(s)	515, 653, 746, 838, 1098, 1297
AgsI	TTSAA	4 cut(s)	953, 1219, 1855, 1869
AhdI	GACNNNNNGTC	1 cut(s)	1028
AjnI	CCWGG	5 cut(s)	635, 652, 939, 1678, 1794
AjuI	GAANNNNNNNTTGG	2 cut(s)	1769, 1801
AleI	CACNNNNGTG	1 cut(s)	1292
AloI	GAACNNNNNNTCC	2 cut(s)	921, 953
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	3 cut(s)	1015, 1078, 1653
AlwI	GGATC	4 cut(s)	1008, 1021, 1135, 1508
AlwNI	CAGNNNCTG	1 cut(s)	716
Ama87I	CYCGRG	3 cut(s)	1290, 1476, 1890
Aor51HI	AGCGCT	2 cut(s)	85, 109
AoxI	GGCC	7 cut(s)	66, 518, 638, 1463, 1676, 1730, 1879
ApeKI	GCWGC	6 cut(s)	438, 673, 901, 1196, 1571, 1574
ApoI	RAATTY	3 cut(s)	531, 935, 1037
ArsI	GACNNNNNNTTYG	2 cut(s)	1465, 1497
Asp700I	GAANNNNTTC	1 cut(s)	1041
AspLEI	GCGC	7 cut(s)	19, 86, 110, 158, 160, 208, 1808
AspS9I	GGNCC	6 cut(s)	67, 237, 518, 542, 1101, 1464
AsuC2I	CCSGG	5 cut(s)	234, 517, 747, 1891, 1892
AsuHPI	GGTGA	2 cut(s)	189, 567
AvaI	CYCGRG	3 cut(s)	1290, 1476, 1890
AvaII	GGWCC	3 cut(s)	237, 542, 1101
BaeI	ACNNNNGTAYC	2 cut(s)	366, 399
BamHI	GGATCC	1 cut(s)	1013
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	6 cut(s)	425, 685, 913, 1208, 1558, 1586
BccI	CCATC	4 cut(s)	1291, 1543, 1774, 1867
BceAI	ACGGC	6 cut(s)	238, 280, 316, 337, 948, 1819
BciT130I	CCWGG	5 cut(s)	637, 654, 941, 1680, 1796
BciVI	GTATCC	2 cut(s)	367, 992
BcnI	CCSGG	5 cut(s)	234, 517, 747, 1891, 1892
BcoDI	GTCTC	3 cut(s)	1015, 1078, 1653
BfaI	CTAG	5 cut(s)	419, 1316, 1335, 1518, 1809
BfmI	CTRYAG	5 cut(s)	579, 627, 1523, 1572, 1696
BfoI	RGCGCY	5 cut(s)	20, 87, 111, 209, 1809
BfuAI	ACCTGC	1 cut(s)	586
BfuI	GTATCC	2 cut(s)	367, 992
BglI	GCCNNNNNGGC	1 cut(s)	65
Bme18I	GGWCC	3 cut(s)	237, 542, 1101
BmeRI	GACNNNNNGTC	1 cut(s)	1028
BmeT110I	CYCGRG	3 cut(s)	1290, 1476, 1890
BmgT120I	GGNCC	6 cut(s)	67, 237, 518, 542, 1101, 1464
BmiI	GGNNCC	6 cut(s)	18, 69, 238, 480, 700, 1015
BmrI	ACTGGG	2 cut(s)	387, 1406
BmsI	GCATC	4 cut(s)	188, 565, 641, 1430
BmuI	ACTGGG	2 cut(s)	387, 1406
BoxI	GACNNNNGTC	1 cut(s)	1245
BpmI	CTGGAG	1 cut(s)	1305
Bpu10I	CCTNAGC	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	1711
BpuMI	CCSGG	5 cut(s)	234, 517, 747, 1891, 1892
BsaAI	YACGTR	1 cut(s)	1431
BsaBI	GATNNNNATC	2 cut(s)	825, 1164
BsaHI	GRCGYC	3 cut(s)	17, 1405, 1600
BsaI	GGTCTC	1 cut(s)	1078
BsaJI	CCNNGG	8 cut(s)	233, 746, 756, 832, 1092, 1679, 1705, 1890
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 205, 235
Bsc4I	CCNNNNNNNGG	6 cut(s)	515, 653, 746, 838, 1098, 1297
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	7 cut(s)	382, 798, 1015, 1146, 1405, 1412, 1512
Bse8I	GATNNNNATC	2 cut(s)	825, 1164
BseBI	CCWGG	5 cut(s)	637, 654, 941, 1680, 1796
BseDI	CCNNGG	8 cut(s)	233, 746, 756, 832, 1092, 1679, 1705, 1890
BseGI	GGATG	3 cut(s)	179, 632, 1165
BseJI	GATNNNNATC	2 cut(s)	825, 1164
BseLI	CCNNNNNNNGG	6 cut(s)	515, 653, 746, 838, 1098, 1297
BseMII	CTCAG	2 cut(s)	442, 1728
BseNI	ACTGG	7 cut(s)	382, 798, 1015, 1146, 1405, 1412, 1512
BsePI	GCGCGC	1 cut(s)	156
BseRI	GAGGAG	7 cut(s)	13, 78, 102, 126, 478, 491, 558
BseXI	GCAGC	6 cut(s)	425, 685, 913, 1208, 1558, 1586
BseYI	CCCAGC	4 cut(s)	152, 202, 217, 1915
BsgI	GTGCAG	2 cut(s)	603, 708
Bsh1236I	CGCG	2 cut(s)	158, 170
BshFI	GGCC	7 cut(s)	68, 520, 640, 1465, 1678, 1732, 1881
BshNI	GGYRCC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	429
BsiHKCI	CYCGRG	3 cut(s)	1290, 1476, 1890
BsiSI	CCGG	7 cut(s)	14, 65, 176, 233, 516, 746, 1891
BslFI	GGGAC	1 cut(s)	1315
BslI	CCNNNNNNNGG	6 cut(s)	515, 653, 746, 838, 1098, 1297
BsmAI	GTCTC	3 cut(s)	1015, 1078, 1653
BsmFI	GGGAC	1 cut(s)	1315
BsnI	GGCC	7 cut(s)	68, 520, 640, 1465, 1678, 1732, 1881
Bso31I	GGTCTC	1 cut(s)	1078
BsoBI	CYCGRG	3 cut(s)	1290, 1476, 1890
Bsp1286I	GDGCHC	2 cut(s)	314, 429
Bsp1407I	TGTACA	1 cut(s)	967
Bsp143I	GATC	6 cut(s)	583, 1013, 1127, 1267, 1513, 1657
Bsp19I	CCATGG	2 cut(s)	1092, 1705
BspANI	GGCC	7 cut(s)	68, 520, 640, 1465, 1678, 1732, 1881
BspCNI	CTCAG	2 cut(s)	441, 1727
BspFNI	CGCG	2 cut(s)	158, 170
BspHI	TCATGA	1 cut(s)	1153
BspLI	GGNNCC	6 cut(s)	18, 69, 238, 480, 700, 1015
BspMAI	CTGCAG	3 cut(s)	583, 1527, 1576
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	4 cut(s)	1008, 1021, 1135, 1508
BspT107I	GGYRCC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	1078
BsrFI	RCCGGY	1 cut(s)	64
BsrGI	TGTACA	1 cut(s)	967
BsrI	ACTGG	7 cut(s)	382, 798, 1015, 1146, 1405, 1412, 1512
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	8 cut(s)	233, 746, 756, 832, 1092, 1679, 1705, 1890
BssHII	GCGCGC	1 cut(s)	156
BssMI	GATC	6 cut(s)	583, 1013, 1127, 1267, 1513, 1657
BssNI	GRCGYC	3 cut(s)	17, 1405, 1600
BssT1I	CCWWGG	4 cut(s)	756, 832, 1092, 1705
Bst2UI	CCWGG	5 cut(s)	637, 654, 941, 1680, 1796
Bst4CI	ACNGT	7 cut(s)	268, 345, 542, 1445, 1700, 1823, 1949
Bst6I	CTCTTC	2 cut(s)	455, 466
BstACI	GRCGYC	3 cut(s)	17, 1405, 1600
BstAPI	GCANNNNNTGC	1 cut(s)	447
BstAUI	TGTACA	1 cut(s)	967
BstBAI	YACGTR	1 cut(s)	1431
BstC8I	GCNNGC	4 cut(s)	158, 168, 554, 1555
BstDEI	CTNAG	3 cut(s)	428, 606, 1714
BstDSI	CCRYGG	2 cut(s)	1092, 1705
BstENI	CCTNNNNNAGG	1 cut(s)	836
BstF5I	GGATG	3 cut(s)	179, 632, 1165
BstFNI	CGCG	2 cut(s)	158, 170
BstH2I	RGCGCY	5 cut(s)	20, 87, 111, 209, 1809
BstHHI	GCGC	7 cut(s)	19, 86, 110, 158, 160, 208, 1808
BstKTI	GATC	6 cut(s)	586, 1016, 1130, 1270, 1516, 1660
BstMAI	GTCTC	3 cut(s)	1015, 1078, 1653
BstMBI	GATC	6 cut(s)	583, 1013, 1127, 1267, 1513, 1657
BstNI	CCWGG	5 cut(s)	637, 654, 941, 1680, 1796
BstPAI	GACNNNNGTC	1 cut(s)	1245
BstSFI	CTRYAG	5 cut(s)	579, 627, 1523, 1572, 1696
BstSNI	TACGTA	1 cut(s)	1431
BstUI	CGCG	2 cut(s)	158, 170
BstV1I	GCAGC	6 cut(s)	425, 685, 913, 1208, 1558, 1586
BstX2I	RGATCY	2 cut(s)	1013, 1127
BstXI	CCANNNNNNTGG	2 cut(s)	1073, 1909
BstYI	RGATCY	2 cut(s)	1013, 1127
BsuI	GTATCC	2 cut(s)	367, 992
BsuRI	GGCC	7 cut(s)	68, 520, 640, 1465, 1678, 1732, 1881
BtgI	CCRYGG	2 cut(s)	1092, 1705
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	3 cut(s)	179, 632, 1165
BtsI	GCAGTG	3 cut(s)	691, 1696, 1879
BtsIMutI	CAGTG	5 cut(s)	691, 1696, 1828, 1879, 1954
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	4 cut(s)	158, 168, 554, 1555
CaiI	CAGNNNCTG	1 cut(s)	716
CciI	TCATGA	1 cut(s)	1153
CfoI	GCGC	7 cut(s)	19, 86, 110, 158, 160, 208, 1808
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	6 cut(s)	67, 237, 518, 542, 1101, 1464
Cfr9I	CCCGGG	1 cut(s)	1890
CseI	GACGC	3 cut(s)	1413, 1427, 1589
Csp6I	GTAC	5 cut(s)	968, 1432, 1583, 1801, 1819
CviAII	CATG	8 cut(s)	590, 1006, 1073, 1093, 1154, 1280, 1558, 1706
CviQI	GTAC	5 cut(s)	968, 1432, 1583, 1801, 1819
DdeI	CTNAG	3 cut(s)	428, 606, 1714
DinI	GGCGCC	1 cut(s)	18
DpnI	GATC	6 cut(s)	585, 1015, 1129, 1269, 1515, 1659
DpnII	GATC	6 cut(s)	583, 1013, 1127, 1267, 1513, 1657
DrdI	GACNNNNNNGTC	1 cut(s)	343
DriI	GACNNNNNGTC	1 cut(s)	1028
DseDI	GACNNNNNNGTC	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	455, 466
Eam1105I	GACNNNNNGTC	1 cut(s)	1028
EarI	CTCTTC	2 cut(s)	455, 466
EciI	GGCGGA	5 cut(s)	81, 105, 129, 306, 489
Eco105I	TACGTA	1 cut(s)	1431
Eco130I	CCWWGG	4 cut(s)	756, 832, 1092, 1705
Eco147I	AGGCCT	2 cut(s)	1678, 1732
Eco24I	GRGCYC	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	1078
Eco32I	GATATC	1 cut(s)	1189
Eco47I	GGWCC	3 cut(s)	237, 542, 1101
Eco47III	AGCGCT	2 cut(s)	85, 109
Eco57I	CTGAAG	1 cut(s)	926
Eco88I	CYCGRG	3 cut(s)	1290, 1476, 1890
EcoNI	CCTNNNNNAGG	1 cut(s)	836
EcoO109I	RGGNCCY	1 cut(s)	237
EcoRI	GAATTC	1 cut(s)	935
EcoRII	CCWGG	5 cut(s)	635, 652, 939, 1678, 1794
EcoRV	GATATC	1 cut(s)	1189
EcoT14I	CCWWGG	4 cut(s)	756, 832, 1092, 1705
EcoT38I	GRGCYC	1 cut(s)	314
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
ErhI	CCWWGG	4 cut(s)	756, 832, 1092, 1705
FaeI	CATG	8 cut(s)	593, 1009, 1076, 1096, 1157, 1283, 1561, 1709
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FaqI	GGGAC	1 cut(s)	1315
FatI	CATG	8 cut(s)	589, 1005, 1072, 1092, 1153, 1279, 1557, 1705
FauI	CCCGC	4 cut(s)	64, 136, 175, 561
FblI	GTMKAC	4 cut(s)	299, 335, 1603, 1695
FokI	GGATG	3 cut(s)	166, 619, 1152
FriOI	GRGCYC	1 cut(s)	314
FspBI	CTAG	5 cut(s)	419, 1316, 1335, 1518, 1809
GlaI	GCGC	7 cut(s)	18, 85, 109, 157, 159, 207, 1807
GsaI	CCCAGC	4 cut(s)	156, 206, 221, 1919
GsuI	CTGGAG	1 cut(s)	1305
HaeII	RGCGCY	5 cut(s)	20, 87, 111, 209, 1809
HaeIII	GGCC	7 cut(s)	68, 520, 640, 1465, 1678, 1732, 1881
HapII	CCGG	7 cut(s)	14, 65, 176, 233, 516, 746, 1891
HgaI	GACGC	3 cut(s)	1413, 1427, 1589
HhaI	GCGC	7 cut(s)	19, 86, 110, 158, 160, 208, 1808
Hin1I	GRCGYC	3 cut(s)	17, 1405, 1600
Hin1II	CATG	8 cut(s)	593, 1009, 1076, 1096, 1157, 1283, 1561, 1709
Hin6I	GCGC	7 cut(s)	17, 84, 108, 156, 158, 206, 1806
HinP1I	GCGC	7 cut(s)	17, 84, 108, 156, 158, 206, 1806
HincII	GTYRAC	4 cut(s)	300, 336, 1417, 1604
HindII	GTYRAC	4 cut(s)	300, 336, 1417, 1604
HindIII	AAGCTT	1 cut(s)	1256
HinfI	GANTC	9 cut(s)	172, 415, 762, 821, 1474, 1487, 1615, 1671, 1724
HpaII	CCGG	7 cut(s)	14, 65, 176, 233, 516, 746, 1891
HphI	GGTGA	2 cut(s)	189, 567
Hpy188III	TCNNGA	5 cut(s)	366, 1154, 1184, 1322, 1757
Hpy99I	CGWCG	6 cut(s)	148, 301, 304, 337, 349, 1605
HpyAV	CCTTC	7 cut(s)	204, 582, 803, 877, 901, 1661, 1871
HpyCH4III	ACNGT	7 cut(s)	268, 345, 542, 1445, 1700, 1823, 1949
HpyCH4IV	ACGT	3 cut(s)	776, 931, 1430
HpyF3I	CTNAG	3 cut(s)	428, 606, 1714
HpySE526I	ACGT	3 cut(s)	776, 931, 1430
Hsp92I	GRCGYC	3 cut(s)	17, 1405, 1600
Hsp92II	CATG	8 cut(s)	593, 1009, 1076, 1096, 1157, 1283, 1561, 1709
HspAI	GCGC	7 cut(s)	17, 84, 108, 156, 158, 206, 1806
KasI	GGCGCC	1 cut(s)	16
Kzo9I	GATC	6 cut(s)	583, 1013, 1127, 1267, 1513, 1657
LmnI	GCTCC	8 cut(s)	91, 115, 226, 455, 478, 1324, 1912, 1961
Lsp1109I	GCAGC	6 cut(s)	425, 685, 913, 1208, 1558, 1586
LweI	GCATC	4 cut(s)	188, 565, 641, 1430
MaeI	CTAG	5 cut(s)	419, 1316, 1335, 1518, 1809
MaeII	ACGT	3 cut(s)	776, 931, 1430
MaeIII	GTNAC	2 cut(s)	268, 1943
MalI	GATC	6 cut(s)	585, 1015, 1129, 1269, 1515, 1659
MboI	GATC	6 cut(s)	583, 1013, 1127, 1267, 1513, 1657
MboII	GAAGA	8 cut(s)	469, 472, 480, 483, 863, 1142, 1254, 1789
MflI	RGATCY	2 cut(s)	1013, 1127
MhlI	GDGCHC	2 cut(s)	314, 429
MluCI	AATT	6 cut(s)	393, 531, 703, 935, 954, 1037
Mly113I	GGCGCC	1 cut(s)	17
MlyI	GAGTC	4 cut(s)	166, 1468, 1624, 1718
MmeI	TCCRAC	3 cut(s)	248, 536, 976
MroXI	GAANNNNTTC	1 cut(s)	1041
MseI	TTAA	2 cut(s)	1272, 1966
MslI	CAYNNNNRTG	3 cut(s)	1071, 1292, 1689
MspA1I	CMGCKG	1 cut(s)	904
MspI	CCGG	7 cut(s)	14, 65, 176, 233, 516, 746, 1891
MvaI	CCWGG	5 cut(s)	637, 654, 941, 1680, 1796
MvnI	CGCG	2 cut(s)	158, 170
NarI	GGCGCC	1 cut(s)	17
NciI	CCSGG	5 cut(s)	234, 517, 747, 1891, 1892
NcoI	CCATGG	2 cut(s)	1092, 1705
NdeII	GATC	6 cut(s)	583, 1013, 1127, 1267, 1513, 1657
NlaIII	CATG	8 cut(s)	593, 1009, 1076, 1096, 1157, 1283, 1561, 1709
NlaIV	GGNNCC	6 cut(s)	18, 69, 238, 480, 700, 1015
NmuCI	GTSAC	1 cut(s)	268
OliI	CACNNNNGTG	1 cut(s)	1292
PaeR7I	CTCGAG	1 cut(s)	1476
PagI	TCATGA	1 cut(s)	1153
PaqCI	CACCTGC	1 cut(s)	586
PauI	GCGCGC	1 cut(s)	156
PceI	AGGCCT	2 cut(s)	1678, 1732
PcsI	WCGNNNNNNNCGW	2 cut(s)	299, 341
PdmI	GAANNNNTTC	1 cut(s)	1041
PfeI	GAWTC	5 cut(s)	415, 762, 821, 1487, 1671
PflMI	CCANNNNNTGG	1 cut(s)	1098
PleI	GAGTC	4 cut(s)	166, 1468, 1623, 1718
PluTI	GGCGCC	1 cut(s)	20
PpsI	GAGTC	4 cut(s)	166, 1468, 1623, 1718
Ppu21I	YACGTR	1 cut(s)	1431
PpuMI	RGGWCCY	1 cut(s)	237
PshAI	GACNNNNGTC	1 cut(s)	1245
Psp5II	RGGWCCY	1 cut(s)	237
Psp6I	CCWGG	5 cut(s)	635, 652, 939, 1678, 1794
PspFI	CCCAGC	4 cut(s)	152, 202, 217, 1915
PspGI	CCWGG	5 cut(s)	635, 652, 939, 1678, 1794
PspN4I	GGNNCC	6 cut(s)	18, 69, 238, 480, 700, 1015
PspPI	GGNCC	6 cut(s)	67, 237, 518, 542, 1101, 1464
PspPPI	RGGWCCY	1 cut(s)	237
PspXI	VCTCGAGB	1 cut(s)	1476
PstI	CTGCAG	3 cut(s)	583, 1527, 1576
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	2 cut(s)	1013, 1127
PteI	GCGCGC	1 cut(s)	156
PvuII	CAGCTG	1 cut(s)	904
RsaI	GTAC	5 cut(s)	969, 1433, 1584, 1802, 1820
RsaNI	GTAC	5 cut(s)	968, 1432, 1583, 1801, 1819
RseI	CAYNNNNRTG	3 cut(s)	1071, 1292, 1689
SalI	GTCGAC	3 cut(s)	298, 334, 1602
SaqAI	TTAA	2 cut(s)	1272, 1966
Sau3AI	GATC	6 cut(s)	583, 1013, 1127, 1267, 1513, 1657
Sau96I	GGNCC	6 cut(s)	67, 237, 518, 542, 1101, 1464
SchI	GAGTC	4 cut(s)	166, 1468, 1624, 1718
SduI	GDGCHC	2 cut(s)	314, 429
SfaNI	GCATC	4 cut(s)	188, 565, 641, 1430
SfcI	CTRYAG	5 cut(s)	579, 627, 1523, 1572, 1696
SfoI	GGCGCC	1 cut(s)	18
Sfr274I	CTCGAG	1 cut(s)	1476
SgrDI	CGTCGACG	1 cut(s)	298
SinI	GGWCC	3 cut(s)	237, 542, 1101
SlaI	CTCGAG	1 cut(s)	1476
SmaI	CCCGGG	1 cut(s)	1892
SmiMI	CAYNNNNRTG	3 cut(s)	1071, 1292, 1689
SmlI	CTYRAG	2 cut(s)	1476, 1726
SmoI	CTYRAG	2 cut(s)	1476, 1726
SnaBI	TACGTA	1 cut(s)	1431
Sse9I	AATT	6 cut(s)	393, 531, 703, 935, 954, 1037
SseBI	AGGCCT	2 cut(s)	1678, 1732
SspDI	GGCGCC	1 cut(s)	16
SspMI	CTAG	5 cut(s)	419, 1316, 1335, 1518, 1809
StuI	AGGCCT	2 cut(s)	1678, 1732
StyI	CCWWGG	4 cut(s)	756, 832, 1092, 1705
TaaI	ACNGT	7 cut(s)	268, 345, 542, 1445, 1700, 1823, 1949
TaiI	ACGT	3 cut(s)	779, 934, 1433
TaqI	TCGA	5 cut(s)	299, 335, 1477, 1603, 1939
TasI	AATT	6 cut(s)	393, 531, 703, 935, 954, 1037
TatI	WGTACW	2 cut(s)	967, 1818
TfiI	GAWTC	5 cut(s)	415, 762, 821, 1487, 1671
Tru1I	TTAA	2 cut(s)	1272, 1966
Tru9I	TTAA	2 cut(s)	1272, 1966
TscAI	CASTG	5 cut(s)	691, 1696, 1828, 1879, 1954
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	6 cut(s)	438, 673, 901, 1196, 1571, 1574
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	5 cut(s)	1050, 1142, 1169, 1518, 1940
TspGWI	ACGGA	1 cut(s)	1616
TspMI	CCCGGG	1 cut(s)	1890
TspRI	CASTG	5 cut(s)	691, 1696, 1828, 1879, 1954
Van91I	CCANNNNNTGG	1 cut(s)	1098
VpaK11BI	GGWCC	3 cut(s)	237, 542, 1101
XagI	CCTNNNNNAGG	1 cut(s)	836
XapI	RAATTY	3 cut(s)	531, 935, 1037
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1294, 1906
XhoI	CTCGAG	1 cut(s)	1476
XmaI	CCCGGG	1 cut(s)	1890
XmiI	GTMKAC	4 cut(s)	299, 335, 1603, 1695
XmnI	GAANNNNTTC	1 cut(s)	1041
XspI	CTAG	5 cut(s)	419, 1316, 1335, 1518, 1809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.