Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Forward (+)

60850677 .. 60853105

Gene Structure 2429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG419800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTCGGCGCCGGCCCCTTCCACCACCAACTCCACCTCACCTCCTCCCCCTCCGCCGGCCAACGCTACTGCTCCTACCACTACTCCGCCGCCAACCAACTCCACCGCGTCGCCGCCAACCAACTCCACCACATCGCCGCCACCTCCGGCGTCCACATCTAATACGCCGCCCATAGGAAACTTGCCGCCGGGGAACACGCCGGTCGGGGTTATAGTCGGAGTTGCGATAGGAGGGTTCAGCGTACTTGTTGTAGTGGCCATTATCTTCTTTGTCTATCGGAGACGGAAGAACAGGTTGGCGAGAGCTAATGAGTCAGGTCAACAACCCAAAGATGACCAATTAAAAGGCCCACCTCAAAACTTGCAACAGAACTATGCTCCTCCTTCAGCAGACAAAGTAGAAATGTTTCCAATGCCTACTCATTCCCGTAAACCATCTTCAACCGGTAGCGGCTATGGATCAGATAAACCGCCCCCAGCCTTTGGATTTTCTGAAAGCACATTTACATATAAAGACACCTTGGAATTTCACTTGCATGGAAAGGGGCGACCAACTATGACTTGGCCAACAAGAATGAAAATTGCTGTAGGATCTGCAAAAGGATTGGCATATCTCCATGAGGACTGTAAGTTCTCTTTGAATGCTAGCTCTTTTATTTTGGGAACTACATACAAATTTTCTGTGCTGTTATTTGCCTTGCAAATTGCCTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

238

Amino Acids

25.17

Weight (kDa)

9.78

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccB7I	CCANNNNNTGG	1 cut(s)	482
AccII	CGCG	1 cut(s)	107
AclWI	GGATC	2 cut(s)	466, 598
AcoI	YGGCCR	3 cut(s)	57, 255, 563
AcsI	RAATTY	2 cut(s)	524, 674
AcuI	CTGAAG	1 cut(s)	369
AcyI	GRCGYC	2 cut(s)	8, 149
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	3 cut(s)	55, 173, 482
AgeI	ACCGGT	1 cut(s)	443
AgsI	TTSAA	2 cut(s)	441, 640
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AloI	GAACNNNNNNTCC	2 cut(s)	614, 646
AluBI	AGCT	2 cut(s)	305, 648
AluI	AGCT	2 cut(s)	305, 648
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	2 cut(s)	466, 598
AoxI	GGCC	5 cut(s)	12, 57, 255, 346, 563
ApoI	RAATTY	2 cut(s)	524, 674
AsiGI	ACCGGT	1 cut(s)	443
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	2 cut(s)	13, 347
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	30
AsuNHI	GCTAGC	1 cut(s)	644
BalI	TGGCCA	2 cut(s)	257, 565
BanI	GGYRCC	1 cut(s)	7
BarI	GAAGNNNNNNTAC	2 cut(s)	421, 453
BccI	CCATC	1 cut(s)	442
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	1 cut(s)	585
BfoI	RGCGCY	1 cut(s)	11
BisI	GCNGC	6 cut(s)	89, 113, 137, 167, 185, 451
BlsI	GCNGC	6 cut(s)	90, 114, 138, 168, 186, 452
Bme1390I	CCNGG	1 cut(s)	189
BmgT120I	GGNCC	2 cut(s)	13, 347
BmiI	GGNNCC	2 cut(s)	9, 15
BmrFI	CCNGG	1 cut(s)	189
BmtI	GCTAGC	1 cut(s)	648
BpuMI	CCSGG	1 cut(s)	189
BsaHI	GRCGYC	2 cut(s)	8, 149
BsaJI	CCNNGG	2 cut(s)	188, 519
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 67, 97
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 173, 482
Bse118I	RCCGGY	4 cut(s)	10, 55, 199, 443
BseDI	CCNNGG	2 cut(s)	188, 519
BseLI	CCNNNNNNNGG	3 cut(s)	55, 173, 482
BseRI	GAGGAG	2 cut(s)	33, 369
BseYI	CCCAGC	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	5 cut(s)	14, 59, 257, 348, 565
BshNI	GGYRCC	1 cut(s)	7
BshTI	ACCGGT	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	6 cut(s)	11, 56, 146, 188, 200, 444
BslI	CCNNNNNNNGG	3 cut(s)	55, 173, 482
BsmAI	GTCTC	1 cut(s)	274
BsmBI	CGTCTC	1 cut(s)	274
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	5 cut(s)	14, 59, 257, 348, 565
Bsp143I	GATC	2 cut(s)	458, 590
BspANI	GGCC	5 cut(s)	14, 59, 257, 348, 565
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	9, 15
BspOI	GCTAGC	1 cut(s)	648
BspPI	GGATC	2 cut(s)	466, 598
BspT107I	GGYRCC	1 cut(s)	7
BsrFI	RCCGGY	4 cut(s)	10, 55, 199, 443
BssAI	RCCGGY	4 cut(s)	10, 55, 199, 443
BssECI	CCNNGG	2 cut(s)	188, 519
BssMI	GATC	2 cut(s)	458, 590
BssNI	GRCGYC	2 cut(s)	8, 149
BssT1I	CCWWGG	1 cut(s)	519
Bst4CI	ACNGT	1 cut(s)	626
BstACI	GRCGYC	2 cut(s)	8, 149
BstC8I	GCNNGC	3 cut(s)	12, 57, 646
BstFNI	CGCG	1 cut(s)	107
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	461, 593
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	2 cut(s)	458, 590
BstMCI	CGRYCG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BsuRI	GGCC	5 cut(s)	14, 59, 257, 348, 565
BtgZI	GCGATG	1 cut(s)	117
Cac8I	GCNNGC	3 cut(s)	12, 57, 646
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	4 cut(s)	10, 55, 199, 443
Cfr13I	GGNCC	2 cut(s)	13, 347
CseI	GACGC	2 cut(s)	96, 138
Csp6I	GTAC	1 cut(s)	242
CspAI	ACCGGT	1 cut(s)	443
CviAII	CATG	2 cut(s)	536, 617
CviJI	RGCY	9 cut(s)	14, 59, 257, 305, 348, 453, 479, 565, 648
CviKI_1	RGCY	9 cut(s)	14, 59, 257, 305, 348, 453, 479, 565, 648
CviQI	GTAC	1 cut(s)	242
DinI	GGCGCC	1 cut(s)	9
DpnI	GATC	2 cut(s)	460, 592
DpnII	GATC	2 cut(s)	458, 590
EaeI	YGGCCR	3 cut(s)	57, 255, 563
EciI	GGCGGA	2 cut(s)	42, 75
Eco130I	CCWWGG	1 cut(s)	519
Eco57I	CTGAAG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	519
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	274
FaeI	CATG	2 cut(s)	539, 620
FatI	CATG	2 cut(s)	535, 616
Fnu4HI	GCNGC	6 cut(s)	89, 113, 137, 167, 185, 451
Fsp4HI	GCNGC	6 cut(s)	89, 113, 137, 167, 185, 451
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	6 cut(s)	89, 113, 137, 167, 185, 451
GsaI	CCCAGC	1 cut(s)	479
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	5 cut(s)	14, 59, 257, 348, 565
HapII	CCGG	6 cut(s)	11, 56, 146, 188, 200, 444
HgaI	GACGC	2 cut(s)	96, 138
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	2 cut(s)	8, 149
Hin1II	CATG	2 cut(s)	539, 620
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	320
HindII	GTYRAC	1 cut(s)	320
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	6 cut(s)	11, 56, 146, 188, 200, 444
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	3 cut(s)	153, 320, 431
Hpy188I	TCNGA	4 cut(s)	218, 279, 463, 493
Hpy188III	TCNNGA	1 cut(s)	714
Hpy8I	GTNNAC	3 cut(s)	153, 320, 431
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	27, 393
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4V	TGCA	4 cut(s)	364, 535, 596, 700
Hsp92I	GRCGYC	2 cut(s)	8, 149
Hsp92II	CATG	2 cut(s)	539, 620
HspAI	GCGC	1 cut(s)	8
KasI	GGCGCC	1 cut(s)	7
KroI	GCCGGC	2 cut(s)	10, 55
KroNI	GCCGGC	2 cut(s)	12, 57
Kzo9I	GATC	2 cut(s)	458, 590
LmnI	GCTCC	2 cut(s)	76, 382
LpnPI	CCDG	9 cut(s)	24, 69, 159, 201, 213, 277, 300, 457, 489
MaeI	CTAG	1 cut(s)	645
MalI	GATC	2 cut(s)	460, 592
MboI	GATC	2 cut(s)	458, 590
MboII	GAAGA	3 cut(s)	256, 298, 429
MflI	RGATCY	1 cut(s)	590
MlsI	TGGCCA	2 cut(s)	257, 565
MluCI	AATT	5 cut(s)	338, 524, 579, 674, 702
MluNI	TGGCCA	2 cut(s)	257, 565
Mly113I	GGCGCC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	9 cut(s)	46, 51, 54, 60, 153, 224, 363, 390, 613
Mox20I	TGGCCA	2 cut(s)	257, 565
MroNI	GCCGGC	2 cut(s)	10, 55
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	2 cut(s)	257, 565
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	534
Msp20I	TGGCCA	2 cut(s)	257, 565
MspI	CCGG	6 cut(s)	11, 56, 146, 188, 200, 444
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	646
MvnI	CGCG	1 cut(s)	107
NaeI	GCCGGC	2 cut(s)	12, 57
NarI	GGCGCC	1 cut(s)	8
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	2 cut(s)	458, 590
NgoMIV	GCCGGC	2 cut(s)	10, 55
NheI	GCTAGC	1 cut(s)	644
NlaIII	CATG	2 cut(s)	539, 620
NlaIV	GGNNCC	2 cut(s)	9, 15
PctI	GAATGC	1 cut(s)	646
PdiI	GCCGGC	2 cut(s)	12, 57
PdmI	GAANNNNTTC	1 cut(s)	405
PflMI	CCANNNNNTGG	1 cut(s)	482
PinAI	ACCGGT	1 cut(s)	443
PkrI	GCNGC	6 cut(s)	90, 114, 138, 168, 186, 452
PleI	GAGTC	1 cut(s)	319
PluTI	GGCGCC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	9, 15
PspPI	GGNCC	2 cut(s)	13, 347
PsuI	RGATCY	1 cut(s)	590
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	6 cut(s)	89, 113, 137, 167, 185, 451
Sau3AI	GATC	2 cut(s)	458, 590
Sau96I	GGNCC	2 cut(s)	13, 347
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	9 cut(s)	38, 43, 145, 296, 307, 319, 355, 521, 650
SfcI	CTRYAG	1 cut(s)	585
SfoI	GGCGCC	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	534
Sse9I	AATT	5 cut(s)	338, 524, 579, 674, 702
SspDI	GGCGCC	1 cut(s)	7
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	1 cut(s)	626
TasI	AATT	5 cut(s)	338, 524, 579, 674, 702
TauI	GCSGC	6 cut(s)	91, 115, 139, 169, 187, 453
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TspDTI	ATGAA	1 cut(s)	590
TspGWI	ACGGA	1 cut(s)	298
Van91I	CCANNNNNTGG	1 cut(s)	482
XapI	RAATTY	2 cut(s)	524, 674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	558
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.