Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Reverse (-)

29707270 .. 29708790

Gene Structure 1521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCTTCATTCGGGGTCGTGCTATTGGAATTGATTACTGGACGCCAGCCCATTGATAAAACTCATTCCTTCACTGATGATAGCATGGTTGAGTGGAATGATTACAACTCCAGCGAAATGGCTTGTATGATTGCCTGCGCTGCTGCTTCTGTGCGTCATTCTGCTCGCCGTCGGCCAAAAATGAGCCAGGTAGTTAGAGCTTTGGAAGGCAATCTTTCTCCAGATGAATTAAATGAAGGAGTTATACCAGGTCAGAGTATGATATACAGATCCTCTGAAAGCACACAATACAGTACCCGTGAATACAAGGAAGACATGTTGAAAATTAGGAAGTTAGCACTAGAAAGCCAAGAGCTAGAACAAGGAATTAGTGAGACCAGTGGGCCCAGCAGTGATTTTGGCCAGCACCAATCTGCCTCCAGTGGTGAAGGCCAACAAACCACTCAAGATATCGAACACGGGCAAATGAACAAAGACAGCCAAGACTATGGTAAAAGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

167

Amino Acids

18.58

Weight (kDa)

4.89

Isoelectric Point (pI)

66.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	2 cut(s)	173, 400
AcyI	GRCGYC	1 cut(s)	43
AfaI	GTAC	1 cut(s)	295
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	322
AjnI	CCWGG	2 cut(s)	186, 247
AluBI	AGCT	3 cut(s)	200, 355, 498
AluI	AGCT	3 cut(s)	200, 355, 498
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	4 cut(s)	173, 383, 400, 430
ApaI	GGGCCC	1 cut(s)	387
ApeKI	GCWGC	2 cut(s)	140, 143
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	383, 384
AsuHPI	GGTGA	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	387
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
BbsI	GAAGAC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	127, 130
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	2 cut(s)	188, 249
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	2 cut(s)	341, 356
BisI	GCNGC	2 cut(s)	141, 144
BlsI	GCNGC	2 cut(s)	142, 145
Bme1390I	CCNGG	2 cut(s)	188, 249
BmgT120I	GGNCC	2 cut(s)	383, 384
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	2 cut(s)	188, 249
BpiI	GAAGAC	1 cut(s)	318
BpmI	CTGGAG	3 cut(s)	94, 204, 403
BpuEI	CTTGAG	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	368
Bse1I	ACTGG	3 cut(s)	43, 378, 420
BseBI	CCWGG	2 cut(s)	188, 249
BseNI	ACTGG	3 cut(s)	43, 378, 420
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	127, 130
BseYI	CCCAGC	1 cut(s)	386
BshFI	GGCC	4 cut(s)	175, 385, 402, 432
BsmAI	GTCTC	1 cut(s)	368
BsnI	GGCC	4 cut(s)	175, 385, 402, 432
Bso31I	GGTCTC	1 cut(s)	368
Bsp120I	GGGCCC	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	1 cut(s)	269
BspANI	GGCC	4 cut(s)	175, 385, 402, 432
BspLI	GGNNCC	1 cut(s)	385
BspPI	GGATC	1 cut(s)	264
BspTNI	GGTCTC	1 cut(s)	368
BsrI	ACTGG	3 cut(s)	43, 378, 420
BssMI	GATC	1 cut(s)	269
BssNI	GRCGYC	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	188, 249
Bst4CI	ACNGT	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	43
BstC8I	GCNNGC	4 cut(s)	47, 136, 166, 404
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	1 cut(s)	272
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	2 cut(s)	188, 249
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	2 cut(s)	186, 247
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	127, 130
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	269
BstXI	CCANNNNNNTGG	2 cut(s)	118, 488
BstYI	RGATCY	1 cut(s)	269
BsuRI	GGCC	4 cut(s)	175, 385, 402, 432
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	4 cut(s)	72, 385, 397, 427
Cac8I	GCNNGC	4 cut(s)	47, 136, 166, 404
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	383, 384
CseI	GACGC	2 cut(s)	51, 143
CsiI	ACCWGGT	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	2 cut(s)	85, 316
CviQI	GTAC	1 cut(s)	294
DpnI	GATC	1 cut(s)	271
DpnII	GATC	1 cut(s)	269
EaeI	YGGCCR	2 cut(s)	173, 400
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	368
Eco32I	GATATC	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	186, 247
EcoRV	GATATC	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	387
FaeI	CATG	2 cut(s)	88, 319
FaiI	YATR	7 cut(s)	86, 128, 245, 260, 265, 317, 489
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	2 cut(s)	84, 315
Fnu4HI	GCNGC	2 cut(s)	141, 144
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	2 cut(s)	141, 144
FspBI	CTAG	2 cut(s)	341, 356
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	2 cut(s)	141, 144
GsaI	CCCAGC	1 cut(s)	390
GsuI	CTGGAG	3 cut(s)	94, 204, 403
HaeIII	GGCC	4 cut(s)	175, 385, 402, 432
HgaI	GACGC	2 cut(s)	51, 143
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	2 cut(s)	88, 319
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HphI	GGTGA	1 cut(s)	437
Hpy188I	TCNGA	2 cut(s)	255, 277
Hpy188III	TCNNGA	2 cut(s)	221, 446
Hpy99I	CGWCG	1 cut(s)	174
HpyAV	CCTTC	4 cut(s)	79, 200, 230, 422
HpyCH4III	ACNGT	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	2 cut(s)	88, 319
HspAI	GCGC	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	269
Lsp1109I	GCAGC	2 cut(s)	127, 130
MabI	ACCWGGT	1 cut(s)	247
MaeI	CTAG	2 cut(s)	341, 356
MalI	GATC	1 cut(s)	271
MboI	GATC	1 cut(s)	269
MboII	GAAGA	1 cut(s)	323
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	4 cut(s)	29, 227, 324, 366
MluNI	TGGCCA	1 cut(s)	402
MnlI	CCTC	2 cut(s)	283, 427
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	188, 249
MvaI	CCWGG	2 cut(s)	188, 249
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	1 cut(s)	269
NlaIII	CATG	2 cut(s)	88, 319
NlaIV	GGNNCC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	319
PciI	ACATGT	1 cut(s)	315
PkrI	GCNGC	2 cut(s)	142, 145
PscI	ACATGT	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	186, 247
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	2 cut(s)	186, 247
PspN4I	GGNNCC	1 cut(s)	385
PspOMI	GGGCCC	1 cut(s)	383
PspPI	GGNCC	2 cut(s)	383, 384
PsuI	RGATCY	1 cut(s)	269
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	2 cut(s)	141, 144
Sau3AI	GATC	1 cut(s)	269
Sau96I	GGNCC	2 cut(s)	383, 384
ScrFI	CCNGG	2 cut(s)	188, 249
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	5 cut(s)	192, 202, 253, 357, 500
SexAI	ACCWGGT	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
Sse9I	AATT	4 cut(s)	29, 227, 324, 366
SspMI	CTAG	2 cut(s)	341, 356
StyD4I	CCNGG	2 cut(s)	186, 247
TaaI	ACNGT	1 cut(s)	293
TaqI	TCGA	1 cut(s)	453
TasI	AATT	4 cut(s)	29, 227, 324, 366
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	4 cut(s)	79, 385, 397, 427
TseI	GCWGC	2 cut(s)	140, 143
TspDTI	ATGAA	3 cut(s)	240, 249, 482
TspRI	CASTG	4 cut(s)	79, 385, 397, 427
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	2 cut(s)	341, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.