Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Forward (+)

56105798 .. 56106515

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50907

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGTTACTTCTGAGGAAAAGCAGTTTTCGATGTGAAAATGACTACATCTCCAGTGAAATGGCTTGTATGGTTGCTTATGCTGCTGCTTGCATCCGTCATTCTTCTCAACGTTGGCCACAAATGAGCCAGGTAGTCTTACAAAGTTCTGAAGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

52

Amino Acids

5.93

Weight (kDa)

7.74

Isoelectric Point (pI)

113.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	109
AcoI	YGGCCR	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	126
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	2 cut(s)	80, 83
BalI	TGGCCA	1 cut(s)	115
BbvI	GCAGC	2 cut(s)	67, 70
BciT130I	CCWGG	1 cut(s)	128
BisI	GCNGC	2 cut(s)	81, 84
BlsI	GCNGC	2 cut(s)	82, 85
Bme1390I	CCNGG	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse1I	ACTGG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	67, 70
BshFI	GGCC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	67, 70
BstXI	CCANNNNNNTGG	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	88
CviJI	RGCY	3 cut(s)	62, 115, 126
CviKI_1	RGCY	3 cut(s)	62, 115, 126
DdeI	CTNAG	1 cut(s)	11
EaeI	YGGCCR	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	126
FaiI	YATR	2 cut(s)	68, 78
Fnu4HI	GCNGC	2 cut(s)	81, 84
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	81, 84
FspEI	CC	8 cut(s)	44, 53, 64, 97, 107, 113, 129, 140
GluI	GCNGC	2 cut(s)	81, 84
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	12, 148
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	109
LpnPI	CCDG	3 cut(s)	64, 113, 140
Lsp1109I	GCAGC	2 cut(s)	67, 70
LweI	GCATC	1 cut(s)	99
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	93
MlsI	TGGCCA	1 cut(s)	115
MluNI	TGGCCA	1 cut(s)	115
MnlI	CCTC	1 cut(s)	6
Mox20I	TGGCCA	1 cut(s)	115
MscI	TGGCCA	1 cut(s)	115
Msp20I	TGGCCA	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	82, 85
Psp1406I	AACGTT	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
SatI	GCNGC	2 cut(s)	81, 84
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	2 cut(s)	112, 132
SfaNI	GCATC	1 cut(s)	99
SgeI	CNNG	5 cut(s)	63, 75, 99, 139, 140
StyD4I	CCNGG	1 cut(s)	126
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	28
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	2 cut(s)	80, 83
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.