Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Forward (+)

60958716 .. 60967914

Gene Structure 9199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG420100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGACTGATTATTACCAGTTGCCGGATATAGTCGGACCTGTGATAATAGGGTTCATTGTACTTGGTGGAGTGGTCAAACTCATTATCTTCTTTATCCATCGGAGACGGAATAACAGGTTAGCGAGAGCTAATGAGTCAGGGCAACAACCCGAAGGTCATCCCAAGATCATACACCGTGACATCAAGGCTGCCAATATTCTTATTGATGCCAACTTTGAGGCAAAGGTTGCAGACTTTGGACTTGCCAAGTTTGCCTTAGATACAGATACTCATGTCTCCACAAGGGTTATGGGAACTTTTGGATACTTAGCTCCTGAATATGCATCCAGTGGAAAGCTCAGTGATAAGTCAGATGTCTTCTCATTCGGAGTCGTGCTATTGGAATTGATTACTGGACGACAACCCATTGATAAAACTCATTCCTTCACTGATGATAGCATGGTTGAGTGGGCAAGGCCTTTGCTCGCGCGAGCATTGGAAAAGGGAAACTTTGATGGTCTTGTTGATGAAAGGTTGCAGAATGATTACAACTCCAGCGAAATGGCTCGTATGATTGCCTGCGCTGCTGCTTCTGTGCGTCATTCTGCTCGCCGTCGGCCAAAAATGAGCCAGGTACTTCGAGCTTTGGAAGGCAATCTTTCTCCAGATGAATTAAATGAAGGAGTTATACCAGGTCAAAGTATGATATACAGTTCCTCTGAAAGCACACGATACAGCACTCGTGAATACAAGGAAGACATGTTGGAATTTAGAAAGTTAGCACTAGAAAGCCAAGAGCTAGATGAAGGAATTAGTGAGACCAGTGGGCCCAGCAGTGATTTTGGCCAGCACCAATCTGCCTCTAGTGGTGAAGGCCAACAAACCAGTCAAGATACCGAACGCGGGCGAATGGACAAAGACAGCCAAGACTATATATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

306

Amino Acids

34.13

Weight (kDa)

5.28

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	55 - 144	2.8e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	55 - 205	1.9e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	467, 469, 882
AciI	CCGC	1 cut(s)	882
AcoI	YGGCCR	2 cut(s)	596, 823
AcsI	RAATTY	1 cut(s)	746
AfaI	GTAC	2 cut(s)	60, 615
AfiI	CCNNNNNNNGG	2 cut(s)	22, 882
AflIII	ACRYGT	1 cut(s)	738
AjnI	CCWGG	2 cut(s)	609, 670
AluBI	AGCT	5 cut(s)	128, 311, 337, 623, 778
AluI	AGCT	5 cut(s)	128, 311, 337, 623, 778
Alw26I	GTCTC	3 cut(s)	97, 280, 791
AoxI	GGCC	5 cut(s)	455, 596, 806, 823, 853
ApaI	GGGCCC	1 cut(s)	810
ApeKI	GCWGC	3 cut(s)	188, 563, 566
ApoI	RAATTY	1 cut(s)	746
AspLEI	GCGC	2 cut(s)	469, 563
AspS9I	GGNCC	3 cut(s)	35, 806, 807
AsuHPI	GGTGA	1 cut(s)	860
AvaII	GGWCC	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	810
BaeI	ACNNNNGTAYC	2 cut(s)	258, 291
BalI	TGGCCA	1 cut(s)	825
BanII	GRGCYC	1 cut(s)	810
BarI	GAAGNNNNNNTAC	2 cut(s)	651, 683
BauI	CACGAG	1 cut(s)	720
BbsI	GAAGAC	2 cut(s)	349, 741
BbvI	GCAGC	3 cut(s)	175, 550, 553
BccI	CCATC	2 cut(s)	105, 488
BceAI	ACGGC	1 cut(s)	576
BciT130I	CCWGG	2 cut(s)	611, 672
BciVI	GTATCC	1 cut(s)	296
BcoDI	GTCTC	3 cut(s)	97, 280, 791
BfaI	CTAG	3 cut(s)	764, 779, 843
BfuI	GTATCC	1 cut(s)	296
BisI	GCNGC	3 cut(s)	189, 564, 567
BlsI	GCNGC	3 cut(s)	190, 565, 568
Bme1390I	CCNGG	2 cut(s)	611, 672
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	3 cut(s)	35, 806, 807
BmiI	GGNNCC	1 cut(s)	808
BmrFI	CCNGG	2 cut(s)	611, 672
BmsI	GCATC	2 cut(s)	196, 332
BpiI	GAAGAC	2 cut(s)	349, 741
BpmI	CTGGAG	2 cut(s)	517, 627
BsaI	GGTCTC	1 cut(s)	791
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 882
Bse1I	ACTGG	5 cut(s)	16, 327, 397, 801, 864
BseBI	CCWGG	2 cut(s)	611, 672
BseGI	GGATG	2 cut(s)	157, 323
BseLI	CCNNNNNNNGG	2 cut(s)	22, 882
BseMII	CTCAG	1 cut(s)	352
BseNI	ACTGG	5 cut(s)	16, 327, 397, 801, 864
BseSI	GKGCMC	1 cut(s)	810
BseXI	GCAGC	3 cut(s)	175, 550, 553
BseYI	CCCAGC	1 cut(s)	809
Bsh1236I	CGCG	3 cut(s)	467, 469, 882
BshFI	GGCC	5 cut(s)	457, 598, 808, 825, 855
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	22, 882
BsmAI	GTCTC	3 cut(s)	97, 280, 791
BsmBI	CGTCTC	1 cut(s)	97
BsnI	GGCC	5 cut(s)	457, 598, 808, 825, 855
Bso31I	GGTCTC	1 cut(s)	791
Bsp120I	GGGCCC	1 cut(s)	806
Bsp1286I	GDGCHC	1 cut(s)	810
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	1 cut(s)	882
BspANI	GGCC	5 cut(s)	457, 598, 808, 825, 855
BspCNI	CTCAG	1 cut(s)	351
BspFNI	CGCG	3 cut(s)	467, 469, 882
BspLI	GGNNCC	1 cut(s)	808
BspTNI	GGTCTC	1 cut(s)	791
BsrI	ACTGG	5 cut(s)	16, 327, 397, 801, 864
BssMI	GATC	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	720
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	2 cut(s)	611, 672
Bst4CI	ACNGT	2 cut(s)	176, 692
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	6 cut(s)	465, 471, 559, 589, 827, 884
BstDEI	CTNAG	3 cut(s)	256, 307, 338
BstF5I	GGATG	2 cut(s)	157, 323
BstFNI	CGCG	3 cut(s)	467, 469, 882
BstHHI	GCGC	2 cut(s)	469, 563
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	3 cut(s)	97, 280, 791
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 251, 563
BstNI	CCWGG	2 cut(s)	611, 672
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	2 cut(s)	609, 670
BstSLI	GKGCMC	1 cut(s)	810
BstUI	CGCG	3 cut(s)	467, 469, 882
BstV1I	GCAGC	3 cut(s)	175, 550, 553
BstV2I	GAAGAC	2 cut(s)	349, 741
BstXI	CCANNNNNNTGG	1 cut(s)	541
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	5 cut(s)	457, 598, 808, 825, 855
BtsCI	GGATG	2 cut(s)	157, 323
BtsI	GCAGTG	1 cut(s)	820
BtsIMutI	CAGTG	5 cut(s)	334, 346, 426, 808, 820
Cac8I	GCNNGC	6 cut(s)	465, 471, 559, 589, 827, 884
CfoI	GCGC	2 cut(s)	469, 563
Cfr13I	GGNCC	3 cut(s)	35, 806, 807
CseI	GACGC	1 cut(s)	566
CsiI	ACCWGGT	1 cut(s)	670
Csp6I	GTAC	2 cut(s)	59, 614
CviAII	CATG	3 cut(s)	272, 439, 739
CviQI	GTAC	2 cut(s)	59, 614
DdeI	CTNAG	3 cut(s)	256, 307, 338
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
EaeI	YGGCCR	2 cut(s)	596, 823
Eco147I	AGGCCT	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	810
Eco31I	GGTCTC	1 cut(s)	791
Eco47I	GGWCC	1 cut(s)	35
EcoRII	CCWGG	2 cut(s)	609, 670
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	810
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	3 cut(s)	275, 442, 742
FalI	AAGNNNNNCTT	6 cut(s)	239, 271, 473, 505, 621, 653
FatI	CATG	3 cut(s)	271, 438, 738
FauI	CCCGC	1 cut(s)	875
Fnu4HI	GCNGC	3 cut(s)	189, 564, 567
FokI	GGATG	2 cut(s)	144, 310
FriOI	GRGCYC	1 cut(s)	810
Fsp4HI	GCNGC	3 cut(s)	189, 564, 567
FspBI	CTAG	3 cut(s)	764, 779, 843
GlaI	GCGC	2 cut(s)	468, 562
GluI	GCNGC	3 cut(s)	189, 564, 567
GsaI	CCCAGC	1 cut(s)	813
GsuI	CTGGAG	2 cut(s)	517, 627
HaeIII	GGCC	5 cut(s)	457, 598, 808, 825, 855
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	566
HhaI	GCGC	2 cut(s)	469, 563
Hin1II	CATG	3 cut(s)	275, 442, 742
Hin6I	GCGC	2 cut(s)	467, 561
HinP1I	GCGC	2 cut(s)	467, 561
HinfI	GANTC	2 cut(s)	134, 369
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	860
Hpy188I	TCNGA	5 cut(s)	35, 102, 352, 368, 700
Hpy188III	TCNNGA	4 cut(s)	314, 644, 722, 869
Hpy99I	CGWCG	1 cut(s)	597
HpyAV	CCTTC	6 cut(s)	146, 433, 623, 653, 779, 845
HpyCH4III	ACNGT	2 cut(s)	176, 692
HpyCH4V	TGCA	3 cut(s)	230, 323, 517
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 251, 563
HpyF3I	CTNAG	3 cut(s)	256, 307, 338
Hsp92II	CATG	3 cut(s)	275, 442, 742
HspAI	GCGC	2 cut(s)	467, 561
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	316
Lsp1109I	GCAGC	3 cut(s)	175, 550, 553
LweI	GCATC	2 cut(s)	196, 332
MabI	ACCWGGT	1 cut(s)	670
MaeI	CTAG	3 cut(s)	764, 779, 843
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	3 cut(s)	79, 349, 746
MhlI	GDGCHC	1 cut(s)	810
MlsI	TGGCCA	1 cut(s)	825
MluCI	AATT	4 cut(s)	383, 650, 746, 789
MluNI	TGGCCA	1 cut(s)	825
MlyI	GAGTC	2 cut(s)	143, 378
MmeI	TCCRAC	2 cut(s)	13, 723
MnlI	CCTC	3 cut(s)	211, 706, 850
Mox20I	TGGCCA	1 cut(s)	825
Mph1103I	ATGCAT	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	825
MseI	TTAA	1 cut(s)	653
Msp20I	TGGCCA	1 cut(s)	825
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	2 cut(s)	611, 672
MvaI	CCWGG	2 cut(s)	611, 672
MvnI	CGCG	3 cut(s)	467, 469, 882
MwoI	GCNNNNNNNGC	3 cut(s)	227, 251, 563
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	3 cut(s)	275, 442, 742
NlaIV	GGNNCC	1 cut(s)	808
NmuCI	GTSAC	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	1 cut(s)	742
PceI	AGGCCT	1 cut(s)	457
PciI	ACATGT	1 cut(s)	738
PkrI	GCNGC	3 cut(s)	190, 565, 568
PleI	GAGTC	2 cut(s)	142, 377
PpsI	GAGTC	2 cut(s)	142, 377
PscI	ACATGT	1 cut(s)	738
Psp6I	CCWGG	2 cut(s)	609, 670
PspFI	CCCAGC	1 cut(s)	809
PspGI	CCWGG	2 cut(s)	609, 670
PspN4I	GGNNCC	1 cut(s)	808
PspOMI	GGGCCC	1 cut(s)	806
PspPI	GGNCC	3 cut(s)	35, 806, 807
RsaI	GTAC	2 cut(s)	60, 615
RsaNI	GTAC	2 cut(s)	59, 614
SaqAI	TTAA	1 cut(s)	653
SatI	GCNGC	3 cut(s)	189, 564, 567
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	3 cut(s)	35, 806, 807
SchI	GAGTC	2 cut(s)	143, 378
ScrFI	CCNGG	2 cut(s)	611, 672
SduI	GDGCHC	1 cut(s)	810
SexAI	ACCWGGT	1 cut(s)	670
SfaNI	GCATC	2 cut(s)	196, 332
SinI	GGWCC	1 cut(s)	35
Sse9I	AATT	4 cut(s)	383, 650, 746, 789
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	1 cut(s)	882
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	3 cut(s)	764, 779, 843
StuI	AGGCCT	1 cut(s)	457
StyD4I	CCNGG	2 cut(s)	609, 670
TaaI	ACNGT	2 cut(s)	176, 692
TaqI	TCGA	1 cut(s)	619
TasI	AATT	4 cut(s)	383, 650, 746, 789
TatI	WGTACW	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TscAI	CASTG	5 cut(s)	334, 346, 433, 808, 820
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	3 cut(s)	188, 563, 566
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	5 cut(s)	43, 522, 663, 672, 798
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	5 cut(s)	334, 346, 433, 808, 820
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	1 cut(s)	746
XceI	RCATGY	1 cut(s)	742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	3 cut(s)	764, 779, 843
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.