Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Forward (+)

56214785 .. 56218154

Gene Structure 3370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019744

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTCGGCACCGACTATTTATCCGACGATCAATGCCACCGCTCCTACAGGTACTCTTCAGCCGACCAACGCTACTGCTTCTACCGGTACTCCTCTGACAACAAACACTACCGCGTCTCCTCCTCCTGCGTCGACGTCTAATTCGCCACCGCCCATAGGGAAGTTGCCGTCGGGGAGCACGCCGGTCGGGGTTATAGTCGGAGTTGCGACAGGAGGATTCAGTGTACTTGTTGTAGTAGTCATTATCTTCTTTATCTATCGGAGACGGAAGAACAGGTTAGCGAGAGCTAATGAGTCAGAGCAACAACTCAAAGATAAACCACCCCCAGCCTTTGGATTTTCAGAAAGCACATTTACATTTGAAGAATTAGTCATGGCAACAAATGGATTCTCCCACGACAATCTTCTTGGTCAAGGAGGCTTTGGTTTTGTCCATAAAGGTATTCTTCCAAATGGGAAAGTGGTTGCAATTAAACAGCTGAAAGCTGGGAGTGGACAGGGGGAGCGTGAATTCCAGGCAGAGGTTCAAGTCATTAATCGTGTCCATCACAGACATCTTGTATCACTGGTTGGATACTGCATTAGTAGGGCCCAGAGATTGCTTGTTTATGAGTTCGTTTCCAACAACACCTTGGAATTTCACTTGCATGGAAAGGGGCGACCAACTATGACTTGGCCAACAAGAATGAAAATTGCTGTAGGATCTGCAAAAGGATTGGCATATCTCCATGAGGACTGTCATCCCAAGATCATACACCGTGACATCAAGGCTGCCAATATTCTTATTGATGACAACTTTGAGGCAAAGTCTGAAAAACAAACCCTTTATGTAAAAAATTACACTTACTTTGAAGACATGATGGTTAATTTGGTAATGGGATGCATGAAAATCCTTGATGACTTTGTTTTGCTTATAACTACAATTGAAATAGAAAAGGAGAGAAGCACGTATATACGAGGTTCAGAATACCTAGCTCCTGAATATGCATCCAGTGGAAAACTCAGTGATAAGTCAGATGTCTTCTCATTTGGAGTCATGCTATTGGAATTGATTACTGGACGCCAACCCATTGATAAAACACATACCCTTACTGATGATAGCATGGTTGAGTGGGTGCGTATACAATATTTTCACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

380

Amino Acids

41.9

Weight (kDa)

8.58

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	132 - 362	2.2e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	133 - 361	1.7e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	914
AatII	GACGTC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	7
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccBSI	CCGCTC	1 cut(s)	41
AccI	GTMKAC	2 cut(s)	131, 1120
AccII	CGCG	1 cut(s)	113
AciI	CCGC	3 cut(s)	39, 111, 149
AclWI	GGATC	1 cut(s)	709
AcoI	YGGCCR	1 cut(s)	674
AcsI	RAATTY	2 cut(s)	509, 635
AcuI	CTGAAG	1 cut(s)	41
AcyI	GRCGYC	2 cut(s)	134, 1060
AfaI	GTAC	3 cut(s)	52, 88, 225
AfiI	CCNNNNNNNGG	3 cut(s)	155, 332, 520
AgeI	ACCGGT	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	362, 527, 851, 926
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	4 cut(s)	287, 478, 485, 974
AluI	AGCT	4 cut(s)	287, 478, 485, 974
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	2 cut(s)	120, 256
AlwI	GGATC	1 cut(s)	709
AoxI	GGCC	2 cut(s)	588, 674
ApaI	GGGCCC	1 cut(s)	592
ApeKI	GCWGC	1 cut(s)	770
ApoI	RAATTY	2 cut(s)	509, 635
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
AseI	ATTAAT	1 cut(s)	534
AsiGI	ACCGGT	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	588, 589
BaeGI	GKGCMC	1 cut(s)	592
BalI	TGGCCA	1 cut(s)	676
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	592
BbsI	GAAGAC	2 cut(s)	858, 1012
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	757
BccI	CCATC	2 cut(s)	552, 853
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	1 cut(s)	515
BciVI	GTATCC	1 cut(s)	566
BcoDI	GTCTC	2 cut(s)	120, 256
BfaI	CTAG	1 cut(s)	971
BfmI	CTRYAG	2 cut(s)	45, 696
BfuI	GTATCC	1 cut(s)	566
BisI	GCNGC	1 cut(s)	771
BlsI	GCNGC	1 cut(s)	772
Bme1390I	CCNGG	1 cut(s)	515
BmgT120I	GGNCC	2 cut(s)	588, 589
BmiI	GGNNCC	2 cut(s)	9, 590
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	2 cut(s)	869, 995
BpiI	GAAGAC	2 cut(s)	858, 1012
BsaAI	YACGTR	1 cut(s)	948
BsaHI	GRCGYC	2 cut(s)	134, 1060
BsaJI	CCNNGG	1 cut(s)	630
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	4 cut(s)	73, 100, 103, 130
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 332, 520
Bse118I	RCCGGY	2 cut(s)	83, 181
Bse1I	ACTGG	3 cut(s)	570, 990, 1060
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	1 cut(s)	630
BseGI	GGATG	3 cut(s)	739, 884, 986
BseLI	CCNNNNNNNGG	3 cut(s)	155, 332, 520
BseMII	CTCAG	1 cut(s)	1015
BseNI	ACTGG	3 cut(s)	570, 990, 1060
BseRI	GAGGAG	3 cut(s)	81, 108, 111
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	1 cut(s)	757
BseYI	CCCAGC	2 cut(s)	325, 485
Bsh1236I	CGCG	1 cut(s)	113
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	590, 676
BshNI	GGYRCC	1 cut(s)	7
BshTI	ACCGGT	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	84, 182
BslI	CCNNNNNNNGG	3 cut(s)	155, 332, 520
BsmAI	GTCTC	2 cut(s)	120, 256
BsmBI	CGTCTC	2 cut(s)	120, 256
BsnI	GGCC	2 cut(s)	590, 676
Bsp120I	GGGCCC	1 cut(s)	588
Bsp1286I	GDGCHC	2 cut(s)	179, 592
Bsp143I	GATC	3 cut(s)	27, 701, 747
BspACI	CCGC	3 cut(s)	39, 111, 149
BspANI	GGCC	2 cut(s)	590, 676
BspCNI	CTCAG	1 cut(s)	1014
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	9, 590
BspPI	GGATC	1 cut(s)	709
BspT107I	GGYRCC	1 cut(s)	7
BsrBI	CCGCTC	1 cut(s)	41
BsrFI	RCCGGY	2 cut(s)	83, 181
BsrI	ACTGG	3 cut(s)	570, 990, 1060
BssAI	RCCGGY	2 cut(s)	83, 181
BssECI	CCNNGG	1 cut(s)	630
BssMI	GATC	3 cut(s)	27, 701, 747
BssNAI	GTATAC	1 cut(s)	1121
BssNI	GRCGYC	2 cut(s)	134, 1060
BssT1I	CCWWGG	1 cut(s)	630
Bst1107I	GTATAC	1 cut(s)	1121
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	737, 758
Bst6I	CTCTTC	1 cut(s)	60
BstACI	GRCGYC	2 cut(s)	134, 1060
BstBAI	YACGTR	1 cut(s)	948
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	1 cut(s)	1001
BstF5I	GGATG	3 cut(s)	739, 884, 986
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	3 cut(s)	30, 704, 750
BstMAI	GTCTC	2 cut(s)	120, 256
BstMBI	GATC	3 cut(s)	27, 701, 747
BstMCI	CGRYCG	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	2 cut(s)	45, 696
BstSLI	GKGCMC	1 cut(s)	592
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	757
BstV2I	GAAGAC	2 cut(s)	858, 1012
BstX2I	RGATCY	1 cut(s)	701
BstYI	RGATCY	1 cut(s)	701
BstZ17I	GTATAC	1 cut(s)	1121
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	2 cut(s)	590, 676
BtsCI	GGATG	3 cut(s)	739, 884, 986
BtsIMutI	CAGTG	4 cut(s)	226, 563, 997, 1009
Cac8I	GCNNGC	1 cut(s)	179
Cfr10I	RCCGGY	2 cut(s)	83, 181
Cfr13I	GGNCC	2 cut(s)	588, 589
CseI	GACGC	3 cut(s)	102, 117, 1068
Csp6I	GTAC	3 cut(s)	51, 87, 224
CspAI	ACCGGT	1 cut(s)	83
CviAII	CATG	7 cut(s)	373, 647, 728, 856, 883, 1036, 1102
CviQI	GTAC	3 cut(s)	51, 87, 224
DdeI	CTNAG	1 cut(s)	1001
DpnI	GATC	3 cut(s)	29, 703, 749
DpnII	GATC	3 cut(s)	27, 701, 747
EaeI	YGGCCR	1 cut(s)	674
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	630
Eco24I	GRGCYC	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	588
EcoRI	GAATTC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	630
EcoT22I	ATGCAT	2 cut(s)	884, 988
EcoT38I	GRGCYC	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	630
Esp3I	CGTCTC	2 cut(s)	120, 256
FaeI	CATG	7 cut(s)	376, 650, 731, 859, 886, 1039, 1105
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FatI	CATG	7 cut(s)	372, 646, 727, 855, 882, 1035, 1101
FblI	GTMKAC	2 cut(s)	131, 1120
Fnu4HI	GCNGC	1 cut(s)	771
FokI	GGATG	3 cut(s)	726, 891, 973
FriOI	GRGCYC	1 cut(s)	592
Fsp4HI	GCNGC	1 cut(s)	771
FspBI	CTAG	1 cut(s)	971
GluI	GCNGC	1 cut(s)	771
GsaI	CCCAGC	2 cut(s)	329, 489
HaeIII	GGCC	2 cut(s)	590, 676
HapII	CCGG	2 cut(s)	84, 182
HgaI	GACGC	3 cut(s)	102, 117, 1068
Hin1I	GRCGYC	2 cut(s)	134, 1060
Hin1II	CATG	7 cut(s)	376, 650, 731, 859, 886, 1039, 1105
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	4 cut(s)	216, 293, 387, 1032
HpaII	CCGG	2 cut(s)	84, 182
Hpy166II	GTNNAC	4 cut(s)	132, 224, 494, 1121
Hpy188I	TCNGA	9 cut(s)	24, 96, 200, 261, 298, 343, 811, 964, 1015
Hpy188III	TCNNGA	1 cut(s)	977
Hpy8I	GTNNAC	4 cut(s)	132, 224, 494, 1121
Hpy99I	CGWCG	4 cut(s)	28, 133, 136, 172
HpyCH4III	ACNGT	2 cut(s)	737, 758
HpyCH4IV	ACGT	2 cut(s)	134, 947
HpyCH4V	TGCA	6 cut(s)	467, 579, 646, 707, 882, 986
HpyF3I	CTNAG	1 cut(s)	1001
HpySE526I	ACGT	2 cut(s)	134, 947
Hsp92I	GRCGYC	2 cut(s)	134, 1060
Hsp92II	CATG	7 cut(s)	376, 650, 731, 859, 886, 1039, 1105
Kzo9I	GATC	3 cut(s)	27, 701, 747
LmnI	GCTCC	4 cut(s)	46, 174, 502, 979
Lsp1109I	GCAGC	1 cut(s)	757
LweI	GCATC	2 cut(s)	869, 995
MaeI	CTAG	1 cut(s)	971
MaeII	ACGT	2 cut(s)	134, 947
MaeIII	GTNAC	1 cut(s)	758
MalI	GATC	3 cut(s)	29, 703, 749
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	3 cut(s)	27, 701, 747
MboII	GAAGA	8 cut(s)	47, 238, 280, 374, 395, 437, 863, 1012
MfeI	CAATTG	1 cut(s)	921
MflI	RGATCY	1 cut(s)	701
MhlI	GDGCHC	2 cut(s)	179, 592
MlsI	TGGCCA	1 cut(s)	676
MluNI	TGGCCA	1 cut(s)	676
MlyI	GAGTC	2 cut(s)	302, 1041
MmeI	TCCRAC	4 cut(s)	47, 178, 550, 645
MnlI	CCTC	9 cut(s)	102, 129, 132, 206, 410, 514, 724, 793, 950
Mox20I	TGGCCA	1 cut(s)	676
Mph1103I	ATGCAT	2 cut(s)	884, 988
MscI	TGGCCA	1 cut(s)	676
MseI	TTAA	3 cut(s)	471, 534, 864
MslI	CAYNNNNRTG	1 cut(s)	645
Msp20I	TGGCCA	1 cut(s)	676
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	2 cut(s)	84, 182
MspR9I	CCNGG	1 cut(s)	515
MunI	CAATTG	1 cut(s)	921
MvaI	CCWGG	1 cut(s)	515
MvnI	CGCG	1 cut(s)	113
NdeII	GATC	3 cut(s)	27, 701, 747
NlaIII	CATG	7 cut(s)	376, 650, 731, 859, 886, 1039, 1105
NlaIV	GGNNCC	2 cut(s)	9, 590
NmuCI	GTSAC	1 cut(s)	758
NsiI	ATGCAT	2 cut(s)	884, 988
PfeI	GAWTC	2 cut(s)	216, 387
PflMI	CCANNNNNTGG	1 cut(s)	332
PinAI	ACCGGT	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	772
PleI	GAGTC	2 cut(s)	301, 1040
PpsI	GAGTC	2 cut(s)	301, 1040
Ppu21I	YACGTR	1 cut(s)	948
PshBI	ATTAAT	1 cut(s)	534
PsiI	TTATAA	1 cut(s)	914
Psp6I	CCWGG	1 cut(s)	513
PspFI	CCCAGC	2 cut(s)	325, 485
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	2 cut(s)	9, 590
PspOMI	GGGCCC	1 cut(s)	588
PspPI	GGNCC	2 cut(s)	588, 589
PsuI	RGATCY	1 cut(s)	701
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	3 cut(s)	52, 88, 225
RsaNI	GTAC	3 cut(s)	51, 87, 224
RseI	CAYNNNNRTG	1 cut(s)	645
SalI	GTCGAC	1 cut(s)	130
SaqAI	TTAA	3 cut(s)	471, 534, 864
SatI	GCNGC	1 cut(s)	771
Sau3AI	GATC	3 cut(s)	27, 701, 747
Sau96I	GGNCC	2 cut(s)	588, 589
SchI	GAGTC	2 cut(s)	302, 1041
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	2 cut(s)	179, 592
SfaNI	GCATC	2 cut(s)	869, 995
SfcI	CTRYAG	2 cut(s)	45, 696
SgrDI	CGTCGACG	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	645
SsiI	CCGC	3 cut(s)	39, 111, 149
SspI	AATATT	2 cut(s)	778, 1127
SspMI	CTAG	1 cut(s)	971
StyD4I	CCNGG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	2 cut(s)	737, 758
TaiI	ACGT	2 cut(s)	137, 950
TaqI	TCGA	1 cut(s)	131
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	2 cut(s)	216, 387
Tru1I	TTAA	3 cut(s)	471, 534, 864
Tru9I	TTAA	3 cut(s)	471, 534, 864
TscAI	CASTG	4 cut(s)	226, 570, 997, 1009
TseFI	GTSAC	1 cut(s)	758
TseI	GCWGC	1 cut(s)	770
Tsp45I	GTSAC	1 cut(s)	758
TspDTI	ATGAA	2 cut(s)	701, 899
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	4 cut(s)	226, 570, 997, 1009
Van91I	CCANNNNNTGG	1 cut(s)	332
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	2 cut(s)	509, 635
XcmI	CCANNNNNNNNNTGG	2 cut(s)	628, 669
XmiI	GTMKAC	2 cut(s)	131, 1120
XspI	CTAG	1 cut(s)	971
ZraI	GACGTC	1 cut(s)	135
Zsp2I	ATGCAT	2 cut(s)	884, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.