Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Reverse (-)

18038278 .. 18039870

Gene Structure 1593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g19940.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCGGCGCCGTCTCCGGCGACCAACTCCACGTCACCTCCTCCTGCTTCACCTGCGACCAACGCCACCTCACCAACTCCTCCAACGACCAACGCCACCGCGCCAACTCCTCCTTCGACGACCAATGACACCACACCTTCTCCACCTCCTCGAACGGTGACAGCGTCAGCGCCGACCGAGTCTCCGCCACCTCCGCCACCTCCGTCTAATTCGCCGGGATTGCCGACGAACCCGAACTTAGGCGTTATAGTAGGGGTTGTGATTGGAGGGTTTTGTACGCTATTTGTGGTGGGCATTTTCTTCCTTTTCTACAGAAGGCGGAAGAGGCGGCAGGCGAGAGCGCAGGAGTCGGGGAACTATCCAGAAGAACCCAAAAATGATTTTGGTGGTCCACCTCAGCATTTGCAACATAATTATGTTCCTCCACCAGCACAAAAAGTAAAACTGTTTCCAAAGCCTACTCATCCCCCAGTACCATCTTCAAGTTCAACTAGTAGCAGCTTGGGCTCTGAGAAACCACCCTCAGTAGCATCGTCTGGCTTTGCCTTTGGATCGTCACAAATCACATTTACATATGAAGAATTGGCAATGGCAACAAATGGTTTCTCCAATGTCAATCTCCTTGGTCAAGGAGGATTTGGATATGTTCATAAAGGAGTCCTACCAAATGGGAAAGTGGTTGCAATTAAGCAGCTGAAAGCTGGGAGTGGGCAAGGGGAGCGTGAATTCCAAGCAGAGATTGAAGTTATTAGTCGTGTCCATCATAGACATCTTGTTTCACTGGTTGGATACTGCATTAGTGGGGTCCAGAGGTTGCTTGTTTACGAGTTCGTTCCAAACAATACCCTGGAATTTCATCTGAAAGGGGAGACCAACTATGGATTGGCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

298

Amino Acids

31.37

Weight (kDa)

9.37

Isoelectric Point (pI)

63.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	7
AccII	CGCG	1 cut(s)	101
AciI	CCGC	5 cut(s)	99, 185, 194, 319, 328
AclWI	GGATC	1 cut(s)	559
AcoI	YGGCCR	1 cut(s)	885
AcsI	RAATTY	2 cut(s)	725, 851
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	2 cut(s)	277, 474
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	3 cut(s)	483, 489, 743
AhlI	ACTAGT	1 cut(s)	491
AjiI	CACGTC	1 cut(s)	33
AjnI	CCWGG	1 cut(s)	846
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	3 cut(s)	501, 694, 701
AluI	AGCT	3 cut(s)	501, 694, 701
Alw26I	GTCTC	3 cut(s)	18, 186, 863
AlwI	GGATC	1 cut(s)	559
AoxI	GGCC	1 cut(s)	885
ApeKI	GCWGC	2 cut(s)	498, 691
ApoI	RAATTY	2 cut(s)	725, 851
AspLEI	GCGC	4 cut(s)	10, 103, 172, 343
AspS9I	GGNCC	2 cut(s)	389, 805
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	4 cut(s)	27, 42, 63, 169
AvaII	GGWCC	2 cut(s)	389, 805
BalI	TGGCCA	1 cut(s)	887
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	509
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	510, 703
BccI	CCATC	2 cut(s)	484, 768
BciT130I	CCWGG	1 cut(s)	848
BciVI	GTATCC	1 cut(s)	782
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	3 cut(s)	18, 186, 863
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	2 cut(s)	492, 892
BfmI	CTRYAG	1 cut(s)	310
BfoI	RGCGCY	2 cut(s)	11, 173
BfuAI	ACCTGC	1 cut(s)	61
BfuI	GTATCC	1 cut(s)	782
BisI	GCNGC	3 cut(s)	329, 499, 692
BlsI	GCNGC	3 cut(s)	330, 500, 693
Bme1390I	CCNGG	2 cut(s)	216, 848
Bme18I	GGWCC	2 cut(s)	389, 805
BmgBI	CACGTC	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	389, 805
BmiI	GGNNCC	2 cut(s)	9, 806
BmrFI	CCNGG	2 cut(s)	216, 848
BmrI	ACTGGG	1 cut(s)	464
BmsI	GCATC	1 cut(s)	539
BmuI	ACTGGG	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	863
BsaJI	CCNNGG	2 cut(s)	622, 846
BsaXI	ACNNNNNCTCC	6 cut(s)	22, 52, 124, 154, 166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	470, 786
Bse3DI	GCAATG	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	848
BseDI	CCNNGG	2 cut(s)	622, 846
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	3 cut(s)	410, 501, 537
BseNI	ACTGG	2 cut(s)	470, 786
BseRI	GAGGAG	4 cut(s)	30, 69, 99, 138
BseXI	GCAGC	2 cut(s)	510, 703
BseYI	CCCAGC	1 cut(s)	701
Bsh1236I	CGCG	1 cut(s)	101
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	887
BshNI	GGYRCC	1 cut(s)	7
BsiEI	CGRYCG	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	17, 215
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	3 cut(s)	18, 186, 863
BsmBI	CGTCTC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	887
Bso31I	GGTCTC	1 cut(s)	863
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp143I	GATC	1 cut(s)	551
BspACI	CCGC	5 cut(s)	99, 185, 194, 319, 328
BspANI	GGCC	1 cut(s)	887
BspCNI	CTCAG	3 cut(s)	409, 502, 536
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	2 cut(s)	9, 806
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	559
BspT107I	GGYRCC	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	863
BsrDI	GCAATG	1 cut(s)	594
BsrI	ACTGG	2 cut(s)	470, 786
BssECI	CCNNGG	2 cut(s)	622, 846
BssMI	GATC	1 cut(s)	551
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	622
Bst2UI	CCWGG	1 cut(s)	848
Bst4CI	ACNGT	2 cut(s)	157, 447
Bst6I	CTCTTC	1 cut(s)	317
BstACI	GRCGYC	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	4 cut(s)	238, 396, 510, 523
BstF5I	GGATG	1 cut(s)	463
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	2 cut(s)	11, 173
BstHHI	GCGC	4 cut(s)	10, 103, 172, 343
BstKTI	GATC	1 cut(s)	554
BstMAI	GTCTC	3 cut(s)	18, 186, 863
BstMBI	GATC	1 cut(s)	551
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 62, 193, 220, 325, 504, 718
BstNI	CCWGG	1 cut(s)	848
BstSCI	CCNGG	2 cut(s)	214, 846
BstSFI	CTRYAG	1 cut(s)	310
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	510, 703
BsuI	GTATCC	1 cut(s)	782
BsuRI	GGCC	1 cut(s)	887
BtrI	CACGTC	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	779
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	4 cut(s)	10, 103, 172, 343
Cfr13I	GGNCC	2 cut(s)	389, 805
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	276, 473
CviJI	RGCY	7 cut(s)	457, 501, 507, 540, 694, 701, 887
CviKI_1	RGCY	7 cut(s)	457, 501, 507, 540, 694, 701, 887
CviQI	GTAC	2 cut(s)	276, 473
DdeI	CTNAG	4 cut(s)	238, 396, 510, 523
DinI	GGCGCC	1 cut(s)	9
DpnI	GATC	1 cut(s)	553
DpnII	GATC	1 cut(s)	551
EaeI	YGGCCR	1 cut(s)	885
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
EciI	GGCGGA	3 cut(s)	174, 183, 334
Eco130I	CCWWGG	1 cut(s)	622
Eco24I	GRGCYC	1 cut(s)	509
Eco31I	GGTCTC	1 cut(s)	863
Eco47I	GGWCC	2 cut(s)	389, 805
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	846
EcoT14I	CCWWGG	1 cut(s)	622
EcoT38I	GRGCYC	1 cut(s)	509
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	622
Esp3I	CGTCTC	1 cut(s)	18
FaiI	YATR	9 cut(s)	248, 411, 417, 574, 576, 645, 651, 765, 879
FauNDI	CATATG	1 cut(s)	574
Fnu4HI	GCNGC	3 cut(s)	329, 499, 692
FokI	GGATG	1 cut(s)	450
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	3 cut(s)	329, 499, 692
FspBI	CTAG	2 cut(s)	492, 892
GlaI	GCGC	4 cut(s)	9, 102, 171, 342
GluI	GCNGC	3 cut(s)	329, 499, 692
GsaI	CCCAGC	1 cut(s)	705
HaeII	RGCGCY	2 cut(s)	11, 173
HaeIII	GGCC	1 cut(s)	887
HapII	CCGG	2 cut(s)	17, 215
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	4 cut(s)	10, 103, 172, 343
Hin1I	GRCGYC	1 cut(s)	8
Hin6I	GCGC	4 cut(s)	8, 101, 170, 341
HinP1I	GCGC	4 cut(s)	8, 101, 170, 341
HinfI	GANTC	3 cut(s)	179, 347, 657
HpaII	CCGG	2 cut(s)	17, 215
HphI	GGTGA	4 cut(s)	27, 42, 63, 169
Hpy166II	GTNNAC	2 cut(s)	392, 823
Hpy188I	TCNGA	2 cut(s)	511, 861
Hpy188III	TCNNGA	2 cut(s)	362, 808
Hpy8I	GTNNAC	2 cut(s)	392, 823
Hpy99I	CGWCG	2 cut(s)	121, 229
HpyAV	CCTTC	3 cut(s)	123, 147, 309
HpyCH4III	ACNGT	2 cut(s)	157, 447
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	406, 683, 795
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 62, 193, 220, 325, 504, 718
HpyF3I	CTNAG	4 cut(s)	238, 396, 510, 523
HpySE526I	ACGT	1 cut(s)	32
Hsp92I	GRCGYC	1 cut(s)	8
HspAI	GCGC	4 cut(s)	8, 101, 170, 341
KasI	GGCGCC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	551
LmnI	GCTCC	1 cut(s)	718
Lsp1109I	GCAGC	2 cut(s)	510, 703
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	2 cut(s)	492, 892
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	3 cut(s)	33, 157, 555
MalI	GATC	1 cut(s)	553
MboI	GATC	1 cut(s)	551
MboII	GAAGA	5 cut(s)	292, 334, 377, 471, 590
MhlI	GDGCHC	1 cut(s)	509
MlsI	TGGCCA	1 cut(s)	887
MluCI	AATT	6 cut(s)	208, 412, 581, 684, 725, 851
MluNI	TGGCCA	1 cut(s)	887
Mly113I	GGCGCC	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	188, 356, 666
MmeI	TCCRAC	2 cut(s)	107, 766
Mox20I	TGGCCA	1 cut(s)	887
MscI	TGGCCA	1 cut(s)	887
MseI	TTAA	1 cut(s)	687
MslI	CAYNNNNRTG	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	887
MspA1I	CMGCKG	1 cut(s)	694
MspI	CCGG	2 cut(s)	17, 215
MspR9I	CCNGG	2 cut(s)	216, 848
MvaI	CCWGG	1 cut(s)	848
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	7 cut(s)	53, 62, 193, 220, 325, 504, 718
NarI	GGCGCC	1 cut(s)	8
NciI	CCSGG	1 cut(s)	216
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	1 cut(s)	551
NlaIV	GGNNCC	2 cut(s)	9, 806
NmuCI	GTSAC	3 cut(s)	33, 157, 555
PaqCI	CACCTGC	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PflFI	GACNNNGTC	2 cut(s)	163, 178
PkrI	GCNGC	3 cut(s)	330, 500, 693
PleI	GAGTC	3 cut(s)	187, 355, 665
PluTI	GGCGCC	1 cut(s)	11
PpsI	GAGTC	3 cut(s)	187, 355, 665
Psp6I	CCWGG	1 cut(s)	846
PspFI	CCCAGC	1 cut(s)	701
PspGI	CCWGG	1 cut(s)	846
PspN4I	GGNNCC	2 cut(s)	9, 806
PspPI	GGNCC	2 cut(s)	389, 805
PsyI	GACNNNGTC	2 cut(s)	163, 178
PvuII	CAGCTG	1 cut(s)	694
RsaI	GTAC	2 cut(s)	277, 474
RsaNI	GTAC	2 cut(s)	276, 473
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	3 cut(s)	329, 499, 692
Sau3AI	GATC	1 cut(s)	551
Sau96I	GGNCC	2 cut(s)	389, 805
SchI	GAGTC	3 cut(s)	188, 356, 666
ScrFI	CCNGG	2 cut(s)	216, 848
SduI	GDGCHC	1 cut(s)	509
SfaNI	GCATC	1 cut(s)	539
SfcI	CTRYAG	1 cut(s)	310
SfoI	GGCGCC	1 cut(s)	9
SinI	GGWCC	2 cut(s)	389, 805
SmiMI	CAYNNNNRTG	1 cut(s)	414
SpeI	ACTAGT	1 cut(s)	491
Sse9I	AATT	6 cut(s)	208, 412, 581, 684, 725, 851
SsiI	CCGC	5 cut(s)	99, 185, 194, 319, 328
SspDI	GGCGCC	1 cut(s)	7
SspMI	CTAG	2 cut(s)	492, 892
StyD4I	CCNGG	2 cut(s)	214, 846
StyI	CCWWGG	1 cut(s)	622
TaaI	ACNGT	2 cut(s)	157, 447
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	116, 151
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	6 cut(s)	208, 412, 581, 684, 725, 851
TauI	GCSGC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	1 cut(s)	786
TseFI	GTSAC	3 cut(s)	33, 157, 555
TseI	GCWGC	2 cut(s)	498, 691
Tsp45I	GTSAC	3 cut(s)	33, 157, 555
TspDTI	ATGAA	3 cut(s)	591, 638, 845
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	786
Tth111I	GACNNNGTC	2 cut(s)	163, 178
VpaK11BI	GGWCC	2 cut(s)	389, 805
XapI	RAATTY	2 cut(s)	725, 851
XcmI	CCANNNNNNNNNTGG	1 cut(s)	880
XspI	CTAG	2 cut(s)	492, 892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.