Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8232347.1

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 758

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8232347.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgaccaattaaaaggcccacctcaaaacttgcaacagaactatgctcctccttcagcagacaaagtagaaatgtttccaatgcccactgattcccgtaaaccatcttcaaccggtagtggctatggatcagataaaccgcccccagcctttggattttccgaaagcacatttacatatgaagaattagtcatggcaacaaatggtttctccaacgacaatcttcttggtcagggaggctttggttatgtccataaaggaattcttccaaatgggaaagtggttgcaattaaacagctgaaagctgggagtggacagggggagcgtgaattccaggcagaggttgaagtca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

116

Amino Acids

12.4

Weight (kDa)

5.05

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	151
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	1 cut(s)	135
AcsI	RAATTY	2 cut(s)	260, 328
AcuI	CTGAAG	1 cut(s)	38
AfiI	CCNNNNNNNGG	2 cut(s)	151, 339
AgeI	ACCGGT	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	110, 346
AjnI	CCWGG	1 cut(s)	332
AluBI	AGCT	2 cut(s)	297, 304
AluI	AGCT	2 cut(s)	297, 304
AlwI	GGATC	1 cut(s)	135
AoxI	GGCC	1 cut(s)	15
ApoI	RAATTY	2 cut(s)	260, 328
AsiGI	ACCGGT	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	90, 122
BccI	CCATC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	334
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 339
Bse118I	RCCGGY	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	334
BseLI	CCNNNNNNNGG	2 cut(s)	151, 339
BseRI	GAGGAG	1 cut(s)	38
BseYI	CCCAGC	2 cut(s)	144, 304
BshFI	GGCC	1 cut(s)	17
BshTI	ACCGGT	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	151, 339
BsnI	GGCC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	112
BssMI	GATC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	334
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	16
CspAI	ACCGGT	1 cut(s)	112
CviAII	CATG	1 cut(s)	192
CviJI	RGCY	6 cut(s)	17, 122, 148, 239, 297, 304
CviKI_1	RGCY	6 cut(s)	17, 122, 148, 239, 297, 304
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	38
EcoRI	GAATTC	2 cut(s)	260, 328
EcoRII	CCWGG	1 cut(s)	332
FaeI	CATG	1 cut(s)	195
FaiI	YATR	7 cut(s)	44, 125, 177, 179, 193, 248, 254
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FatI	CATG	1 cut(s)	191
FauNDI	CATATG	1 cut(s)	177
GsaI	CCCAGC	2 cut(s)	148, 308
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	1 cut(s)	195
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	100, 313
Hpy188I	TCNGA	2 cut(s)	132, 162
Hpy8I	GTNNAC	2 cut(s)	100, 313
HpyAV	CCTTC	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	33, 286
Hsp92II	CATG	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	2 cut(s)	51, 321
LpnPI	CCDG	7 cut(s)	126, 158, 217, 290, 301, 319, 346
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	4 cut(s)	98, 193, 214, 256
MluCI	AATT	5 cut(s)	7, 184, 260, 287, 328
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	4 cut(s)	32, 59, 229, 333
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	2 cut(s)	10, 290
MspA1I	CMGCKG	1 cut(s)	297
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	334
NdeI	CATATG	1 cut(s)	177
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	91
PflMI	CCANNNNNTGG	1 cut(s)	151
PinAI	ACCGGT	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	332
PspFI	CCCAGC	2 cut(s)	144, 304
PspGI	CCWGG	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	10, 290
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	334
SetI	ASST	4 cut(s)	24, 299, 306, 344
Sse9I	AATT	5 cut(s)	7, 184, 260, 287, 328
SsiI	CCGC	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	332
TasI	AATT	5 cut(s)	7, 184, 260, 287, 328
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	2 cut(s)	10, 290
Tru9I	TTAA	2 cut(s)	10, 290
TscAI	CASTG	1 cut(s)	93
TspDTI	ATGAA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	93
Van91I	CCANNNNNTGG	1 cut(s)	151
XapI	RAATTY	2 cut(s)	260, 328
XmnI	GAANNNNTTC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.