Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Forward (+)

61080787 .. 61100990

Gene Structure 20204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG421200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAATGGGTCTGCCAGCCCTCCCCATCCTACAATGACTGGTGATGCCCCCACTTTCACTCCTACAATGACTGCTCGTACAAGCACGCCGGTCGGGGTTATAGTCGGAGTTGCGACAGGAGGGTTCAGTGTACTTGTTGTAGTGGTCATTATCTTCTTTATCTATCGGAGACGGAAGAACAGGTTAGCGAGAGCTAATGAGTACTCAGGGCAACAACCCAAAGGTCATCCCAAGATCATACACCGTGACATCAAGGCTGCCAATATTCTTATTGATGACAACTTTGAGGCAAAGGTTGCAGACTTTGGACTTGCCAAGTTGGCCTTAGATACAGATACTCATGTCTCCACAAGGGTTATGGGAACTTTTGGATACCTAGCTCCTGAATATGCATCCAGTGGAAAGCTCAGTGATAAGTCAGATGTCTTCTCATTCGGAGTCATGCTATTGGAATTGATTACTGGACGCCAACCCATTGATAAAACTCGTTCCTTCACTGATGATAGCATGGTTGAGTGGGTAAGGCCTTTGCTCGCGCAAGCATTGGAAAAGGGAAACTTTGATGGTCTTGTTGATGAAAGGTTGCAGAATGATTACAACTCCAGTGAAATGGCTCGTATGATTGCCTGCGCTGCTGCTTCTGTGCGTCATTCTGCCCGCCGTCGGCCAAAAATGAGCCAGGTAGTTCAAGCTTTGGAAGGAGATCATCTCCAATCTCATGATTTCATTTCCACTCTTTCTCTAGAGGAATTAAATGAAGGGTTCATACCAGGTCGAAGTATGGTCTACAGCTCCTATGGAAGCATGGAATACGTACAGCACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

275

Amino Acids

30.27

Weight (kDa)

6.71

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	78 - 210	1.1e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	78 - 231	3.8e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	786
AccII	CGCG	1 cut(s)	536
AciI	CCGC	1 cut(s)	658
AcoI	YGGCCR	1 cut(s)	665
AcyI	GRCGYC	1 cut(s)	466
AfaI	GTAC	4 cut(s)	79, 132, 203, 816
AfiI	CCNNNNNNNGG	1 cut(s)	663
AgsI	TTSAA	1 cut(s)	689
AjnI	CCWGG	2 cut(s)	678, 769
AluBI	AGCT	5 cut(s)	194, 380, 406, 692, 792
AluI	AGCT	5 cut(s)	194, 380, 406, 692, 792
Alw26I	GTCTC	2 cut(s)	163, 349
AoxI	GGCC	3 cut(s)	321, 524, 665
ApeKI	GCWGC	3 cut(s)	257, 632, 635
AspLEI	GCGC	2 cut(s)	538, 632
AsuHPI	GGTGA	1 cut(s)	53
BaeI	ACNNNNGTAYC	2 cut(s)	327, 360
BarI	GAAGNNNNNNTAC	2 cut(s)	750, 782
BbsI	GAAGAC	1 cut(s)	418
BbvI	GCAGC	3 cut(s)	244, 619, 622
BccI	CCATC	2 cut(s)	33, 557
BceAI	ACGGC	1 cut(s)	645
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	2 cut(s)	680, 771
BciVI	GTATCC	1 cut(s)	365
BcoDI	GTCTC	2 cut(s)	163, 349
BfaI	CTAG	2 cut(s)	377, 743
BfmI	CTRYAG	1 cut(s)	787
BfuI	GTATCC	1 cut(s)	365
BglI	GCCNNNNNGGC	1 cut(s)	320
BisI	GCNGC	3 cut(s)	258, 633, 636
BlsI	GCNGC	3 cut(s)	259, 634, 637
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	2 cut(s)	680, 771
BmrFI	CCNGG	2 cut(s)	680, 771
BmsI	GCATC	2 cut(s)	34, 401
BpiI	GAAGAC	1 cut(s)	418
BplI	GAGNNNNNCTC	2 cut(s)	693, 725
BpmI	CTGGAG	1 cut(s)	586
BsaAI	YACGTR	1 cut(s)	814
BsaHI	GRCGYC	1 cut(s)	466
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	1 cut(s)	663
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	4 cut(s)	43, 396, 466, 603
BseBI	CCWGG	2 cut(s)	680, 771
BseGI	GGATG	3 cut(s)	25, 226, 392
BseLI	CCNNNNNNNGG	1 cut(s)	663
BseMII	CTCAG	2 cut(s)	219, 421
BseNI	ACTGG	4 cut(s)	43, 396, 466, 603
BseXI	GCAGC	3 cut(s)	244, 619, 622
Bsh1236I	CGCG	1 cut(s)	536
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	323, 526, 667
BsiEI	CGRYCG	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	663
BsmAI	GTCTC	2 cut(s)	163, 349
BsmBI	CGTCTC	1 cut(s)	163
BsnI	GGCC	3 cut(s)	323, 526, 667
Bsp143I	GATC	2 cut(s)	234, 703
BspACI	CCGC	1 cut(s)	658
BspANI	GGCC	3 cut(s)	323, 526, 667
BspCNI	CTCAG	2 cut(s)	218, 420
BspFNI	CGCG	1 cut(s)	536
BspHI	TCATGA	2 cut(s)	718, 824
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	4 cut(s)	43, 396, 466, 603
BssAI	RCCGGY	1 cut(s)	88
BssMI	GATC	2 cut(s)	234, 703
BssNI	GRCGYC	1 cut(s)	466
Bst2UI	CCWGG	2 cut(s)	680, 771
Bst4CI	ACNGT	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	466
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstBAI	YACGTR	1 cut(s)	814
BstC8I	GCNNGC	6 cut(s)	16, 86, 534, 540, 628, 658
BstDEI	CTNAG	3 cut(s)	205, 325, 407
BstF5I	GGATG	3 cut(s)	25, 226, 392
BstFNI	CGCG	1 cut(s)	536
BstHHI	GCGC	2 cut(s)	538, 632
BstKTI	GATC	2 cut(s)	237, 706
BstMAI	GTCTC	2 cut(s)	163, 349
BstMBI	GATC	2 cut(s)	234, 703
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 320, 632
BstNI	CCWGG	2 cut(s)	680, 771
BstSCI	CCNGG	2 cut(s)	678, 769
BstSFI	CTRYAG	1 cut(s)	787
BstSNI	TACGTA	1 cut(s)	814
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	3 cut(s)	244, 619, 622
BstV2I	GAAGAC	1 cut(s)	418
BstXI	CCANNNNNNTGG	1 cut(s)	610
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	3 cut(s)	323, 526, 667
BtsCI	GGATG	3 cut(s)	25, 226, 392
BtsIMutI	CAGTG	5 cut(s)	133, 403, 415, 495, 610
Cac8I	GCNNGC	6 cut(s)	16, 86, 534, 540, 628, 658
CciI	TCATGA	2 cut(s)	718, 824
CfoI	GCGC	2 cut(s)	538, 632
Cfr10I	RCCGGY	1 cut(s)	88
CseI	GACGC	2 cut(s)	474, 635
CsiI	ACCWGGT	1 cut(s)	769
Csp6I	GTAC	4 cut(s)	78, 131, 202, 815
CviAII	CATG	6 cut(s)	341, 442, 508, 719, 805, 825
CviQI	GTAC	4 cut(s)	78, 131, 202, 815
DdeI	CTNAG	3 cut(s)	205, 325, 407
DpnI	GATC	2 cut(s)	236, 705
DpnII	GATC	2 cut(s)	234, 703
EaeI	YGGCCR	1 cut(s)	665
Eco105I	TACGTA	1 cut(s)	814
Eco147I	AGGCCT	1 cut(s)	526
EcoRII	CCWGG	2 cut(s)	678, 769
EcoT22I	ATGCAT	1 cut(s)	394
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	6 cut(s)	344, 445, 511, 722, 808, 828
FalI	AAGNNNNNCTT	4 cut(s)	308, 340, 542, 574
FatI	CATG	6 cut(s)	340, 441, 507, 718, 804, 824
FauI	CCCGC	1 cut(s)	665
FblI	GTMKAC	1 cut(s)	786
Fnu4HI	GCNGC	3 cut(s)	258, 633, 636
FokI	GGATG	3 cut(s)	12, 213, 379
Fsp4HI	GCNGC	3 cut(s)	258, 633, 636
FspBI	CTAG	2 cut(s)	377, 743
GlaI	GCGC	2 cut(s)	537, 631
GluI	GCNGC	3 cut(s)	258, 633, 636
GsuI	CTGGAG	1 cut(s)	586
HaeIII	GGCC	3 cut(s)	323, 526, 667
HapII	CCGG	1 cut(s)	89
HgaI	GACGC	2 cut(s)	474, 635
HhaI	GCGC	2 cut(s)	538, 632
Hin1I	GRCGYC	1 cut(s)	466
Hin1II	CATG	6 cut(s)	344, 445, 511, 722, 808, 828
Hin6I	GCGC	2 cut(s)	536, 630
HinP1I	GCGC	2 cut(s)	536, 630
HindIII	AAGCTT	1 cut(s)	690
HinfI	GANTC	1 cut(s)	438
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	2 cut(s)	131, 787
Hpy188I	TCNGA	4 cut(s)	107, 168, 421, 437
Hpy188III	TCNNGA	4 cut(s)	383, 719, 743, 825
Hpy8I	GTNNAC	2 cut(s)	131, 787
Hpy99I	CGWCG	1 cut(s)	666
HpyAV	CCTTC	3 cut(s)	502, 692, 752
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	813
HpyCH4V	TGCA	3 cut(s)	299, 392, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 320, 632
HpyF3I	CTNAG	3 cut(s)	205, 325, 407
HpySE526I	ACGT	1 cut(s)	813
Hsp92I	GRCGYC	1 cut(s)	466
Hsp92II	CATG	6 cut(s)	344, 445, 511, 722, 808, 828
HspAI	GCGC	2 cut(s)	536, 630
Kzo9I	GATC	2 cut(s)	234, 703
LmnI	GCTCC	2 cut(s)	385, 797
Lsp1109I	GCAGC	3 cut(s)	244, 619, 622
LweI	GCATC	2 cut(s)	34, 401
MabI	ACCWGGT	1 cut(s)	769
MaeI	CTAG	2 cut(s)	377, 743
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	2 cut(s)	236, 705
MboI	GATC	2 cut(s)	234, 703
MboII	GAAGA	3 cut(s)	145, 187, 418
MluCI	AATT	2 cut(s)	452, 749
MlyI	GAGTC	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	4 cut(s)	30, 113, 280, 739
Mph1103I	ATGCAT	1 cut(s)	394
MseI	TTAA	1 cut(s)	752
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	680, 771
MvaI	CCWGG	2 cut(s)	680, 771
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	296, 320, 632
NdeII	GATC	2 cut(s)	234, 703
NlaIII	CATG	6 cut(s)	344, 445, 511, 722, 808, 828
NmuCI	GTSAC	1 cut(s)	245
NsiI	ATGCAT	1 cut(s)	394
PagI	TCATGA	2 cut(s)	718, 824
PceI	AGGCCT	1 cut(s)	526
PkrI	GCNGC	3 cut(s)	259, 634, 637
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Ppu21I	YACGTR	1 cut(s)	814
Psp6I	CCWGG	2 cut(s)	678, 769
PspGI	CCWGG	2 cut(s)	678, 769
RsaI	GTAC	4 cut(s)	79, 132, 203, 816
RsaNI	GTAC	4 cut(s)	78, 131, 202, 815
SaqAI	TTAA	1 cut(s)	752
SatI	GCNGC	3 cut(s)	258, 633, 636
Sau3AI	GATC	2 cut(s)	234, 703
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	1 cut(s)	447
ScrFI	CCNGG	2 cut(s)	680, 771
SexAI	ACCWGGT	1 cut(s)	769
SfaNI	GCATC	2 cut(s)	34, 401
SfcI	CTRYAG	1 cut(s)	787
SnaBI	TACGTA	1 cut(s)	814
Sse9I	AATT	2 cut(s)	452, 749
SseBI	AGGCCT	1 cut(s)	526
SsiI	CCGC	1 cut(s)	658
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	2 cut(s)	377, 743
StuI	AGGCCT	1 cut(s)	526
StyD4I	CCNGG	2 cut(s)	678, 769
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	1 cut(s)	816
TaqI	TCGA	1 cut(s)	775
TasI	AATT	2 cut(s)	452, 749
TatI	WGTACW	2 cut(s)	130, 201
Tru1I	TTAA	1 cut(s)	752
Tru9I	TTAA	1 cut(s)	752
TscAI	CASTG	5 cut(s)	133, 403, 415, 502, 610
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	3 cut(s)	257, 632, 635
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	5 cut(s)	17, 591, 715, 754, 771
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	5 cut(s)	133, 403, 415, 502, 610
XbaI	TCTAGA	1 cut(s)	742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	786
XspI	CTAG	2 cut(s)	377, 743
ZrmI	AGTACT	1 cut(s)	203
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.