Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Forward (+)

59579792 .. 59701190

Gene Structure 121399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG400100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2379 bp

ATGTCGGCGCCGGCCCCGTCCACCACCAACTCCACCTCACCTCCTCCCCCTCCGCCGGCCAACGCTACTGCTCCTACCACTACTCCGCCGCCAACCAACTCCACCGCGTCGCCGCCAACCAACTCCACCACATCGCCGCCACCCCCGGCGTCCACATCTAATACGCCGCCCATAGGGCAGTTGCCGTCGGGGAACACGCCGGTCGGGGTTATAGTCGGAGTTGCGATAGGAGGGTTCAGCGTACTTGTTGTAGTGGCCATTATCTTCTTTGTCTATCGGAGACGGAAGAACAGGTTGGCGAGAGCTAATGAGTCAGGTCAACAACCCAAAGATGACCAATTAAAAGGCCCACCTCAAAACTTGCAACAGAACTATGCTCCTCCTTCAGCAGACAAAGTAGAAATGTTTCCAATGCCTACTCATTCCCGTAAACCATCTTCAACCGGTAGCGGCTATGGATCAGATAAACCGCCCCCAGCCTTTGGATTTTCTGAAAGCACATTTACATATGAAGAGTTAGACATGGCAACAAATGGTTTCTCCAACGACAATCTTCTTGGTCAAGGAGGCTTTGGTTATGTCCATAAAGGAATTCTTCCAAATGGGAAAGTGGTTGCAATTAAACAGCTGAAAGCTGGGAGTGGACAGGGGGAGCGTGAATTCCAGGCAGAAGTTGAAGTCATTAATCGTGTCCATCACAGACATCTTGTATCACTGGTTGGATACTGCATTAGTGGGGCCCAGAGATTGCTTGTTTATGAGTTCGTTTCCAACAGCACCTTGGAATTTCACTTGCATGGAAAGGGGCGACCAACTATGACTTGGCCAACAAGAATGAAAATTGCTGTAGGATCTGCAAAAGGATTGGCATATCTCCATGAGGACTGTCATCCCAAGATCATACACCGTGACATCAAGTCTGCCAATATTCTTATTGATGACAACTTTGAGGCAAAGGTTGCAGACTTTGGACTTGCCAAGTTGGCCTTAGATACAGATACTCATGTCTCCACAAGGGTAATGGGAACTTTTGGATACTTGGCTCCTGAATATGCATCCAGTGGAAAGCTCAGTGATAAGTCAGATGTCTTCTCATTCGGGGTCGTGCTATTGGAATTGATTACTGGACGCCAACCCATTGATAAAACTCATTCCTTCACTGATGATAGCATGGTTGAGTGGGCAAGGCCTTTGCTCGCGCGAGCATTGGAAAAGGGAAACTTTGATGGTCTTGTTGATGAAAGGTTGCAGAATGATTACAACTCCAGCGAAATGGCTCGTATGATTGCCTGCGCTGCTGCTTCTGTGCGTCATTCTGCCCGCCGCCGGCCAAAAATGAGCCAGGTACTTCGAGCTTTGGAAGGCAATCTTTCTCCAGATGAATTAAATGAAGGAGTTATACCAGGTCAAAGTATGATATACAGTTCCTCTGAAAGCACAAAATACAGCACTCGTGAATACAAGGAAGACATGTTGAAATTTAGAAAGTTCGCACTAGAAAGCCAAGAGCTAGATCAAGGAATTAGTGAGACCAGTGGGCCCAGCAGTGATTTTGGCCAGCACCAACCTGCCTCTAGTGGTGAAAGCCAACAAACCAGTCAAGATATCGAACATGGGCAAATGGACAAAGACAGCCAAGACTATGATAAAGAACACAACATTCTTGATGAATTGCATGCTCAGGGAGGTATTTTGGGGTGTGATGTGCATGTGCTTTTCAAGTCTATGTTACAATTCAATGATATTGACTTTCTCTTGAATTCATCTGATGGAAATAGGGATTGTGCAGTTGTGGCAGTTGATAAGATTGTTCCTTGTACCAAGGGAAAACGATCTCATTTTATATGTGCTCAAGTTGAGAATATAAATGAGCAGGAGTCAAAGGAACTTTTGAACAGTTTTCTTTGTCAAGAAGAGTATGATATGAGATCTAAAGAAGATTTAGATGAAGTTGAAGCTAGCAGTATTCCCCCACTTATTCCTTTTATGCCATTTGCAATGAAACTTGACCATTTAGATAAGGAAAGGATAATCTTCAGAAGAAGTACTTATCAAAAAATTCTTGCAATGGAGAAAAAAGGGGCACAAGTCATAGAATGTGATCCAGAGCTACCAATTCAACAAAATGTCATCAGGATTGTCTTGTACAGTTTGTTTGTCTCACACGCTGTGATGGCACAACAACTCATACCTGAGGATAATACAAAGCAGGTTGGTACTGCATGGACATTTAAAAGCATTGACATATTTACTGGGCCTGTCAATATGTTCAACGATGAATGGGGGCATCCTACCAGGTTCTTTAAGTTGCTTGTAGGCTTGCACCTCAAGAATCATTTAACATCAAAATGGTGGTTTTGCATGAAGGATACAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

792

Amino Acids

87.44

Weight (kDa)

5.92

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	181 - 387	1.1e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	183 - 394	1.2e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1576, 2200
AccB1I	GGYRCC	1 cut(s)	7
AccB7I	CCANNNNNTGG	1 cut(s)	482
AccII	CGCG	3 cut(s)	107, 1199, 1201
AclWI	GGATC	3 cut(s)	466, 859, 2096
AcoI	YGGCCR	5 cut(s)	57, 255, 824, 1328, 1555
AcsI	RAATTY	6 cut(s)	591, 659, 785, 1478, 1759, 2058
AcuI	CTGAAG	2 cut(s)	369, 2020
AcyI	GRCGYC	3 cut(s)	8, 149, 1129
AdeI	CACNNNGTG	1 cut(s)	2170
AfaI	GTAC	6 cut(s)	243, 1347, 1819, 2047, 2147, 2218
AfiI	CCNNNNNNNGG	4 cut(s)	55, 173, 482, 1326
AflIII	ACRYGT	1 cut(s)	1470
AgeI	ACCGGT	1 cut(s)	443
AhdI	GACNNNNNGTC	1 cut(s)	916
AjnI	CCWGG	4 cut(s)	663, 1341, 1402, 2294
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	8 cut(s)	305, 628, 635, 1069, 1355, 1510, 1958, 2110
AluI	AGCT	8 cut(s)	305, 628, 635, 1069, 1355, 1510, 1958, 2110
Alw21I	GWGCWC	1 cut(s)	1852
Alw26I	GTCTC	4 cut(s)	274, 1012, 1523, 2164
AlwI	GGATC	3 cut(s)	466, 859, 2096
ApaI	GGGCCC	2 cut(s)	742, 1542
ApeKI	GCWGC	2 cut(s)	1295, 1298
ApoI	RAATTY	6 cut(s)	591, 659, 785, 1478, 1759, 2058
AseI	ATTAAT	1 cut(s)	684
AsiGI	ACCGGT	1 cut(s)	443
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	3 cut(s)	10, 1201, 1295
AspS9I	GGNCC	7 cut(s)	13, 347, 738, 739, 1538, 1539, 2255
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	30, 1592
AsuNHI	GCTAGC	1 cut(s)	1958
AxyI	CCTNAGG	1 cut(s)	2193
BaeGI	GKGCMC	3 cut(s)	742, 1542, 2086
BaeI	ACNNNNGTAYC	2 cut(s)	990, 1023
BalI	TGGCCA	3 cut(s)	257, 826, 1557
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	2 cut(s)	742, 1542
BarI	GAAGNNNNNNTAC	4 cut(s)	421, 453, 1383, 1415
BauI	CACGAG	1 cut(s)	1452
BbsI	GAAGAC	2 cut(s)	1081, 1473
Bbv12I	GWGCWC	1 cut(s)	1852
BbvI	GCAGC	2 cut(s)	1282, 1285
BccI	CCATC	5 cut(s)	442, 702, 1220, 1763, 2167
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	4 cut(s)	665, 1343, 1404, 2296
BciVI	GTATCC	3 cut(s)	716, 1028, 2362
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	4 cut(s)	274, 1012, 1523, 2164
BfaI	CTAG	4 cut(s)	1496, 1511, 1575, 1959
BfmI	CTRYAG	1 cut(s)	846
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	2 cut(s)	1576, 2200
BfuI	GTATCC	3 cut(s)	716, 1028, 2362
BglI	GCCNNNNNGGC	2 cut(s)	175, 983
BglII	AGATCT	1 cut(s)	1928
BisI	GCNGC	8 cut(s)	89, 113, 137, 167, 451, 1296, 1299, 1324
BlsI	GCNGC	8 cut(s)	90, 114, 138, 168, 452, 1297, 1300, 1325
BmcAI	AGTACT	1 cut(s)	2047
Bme1390I	CCNGG	5 cut(s)	146, 665, 1343, 1404, 2296
BmeRI	GACNNNNNGTC	1 cut(s)	916
BmgT120I	GGNCC	7 cut(s)	13, 347, 738, 739, 1538, 1539, 2255
BmiI	GGNNCC	6 cut(s)	9, 15, 739, 740, 1044, 1540
BmrFI	CCNGG	5 cut(s)	146, 665, 1343, 1404, 2296
BmrI	ACTGGG	1 cut(s)	2262
BmsI	GCATC	2 cut(s)	1064, 2296
BmtI	GCTAGC	1 cut(s)	1962
BmuI	ACTGGG	1 cut(s)	2262
BpiI	GAAGAC	2 cut(s)	1081, 1473
BpmI	CTGGAG	2 cut(s)	1249, 1359
Bpu10I	CCTNAGC	1 cut(s)	1680
BpuEI	CTTGAG	2 cut(s)	1836, 2312
BpuMI	CCSGG	1 cut(s)	146
BsaHI	GRCGYC	3 cut(s)	8, 149, 1129
BsaI	GGTCTC	1 cut(s)	1523
BsaJI	CCNNGG	3 cut(s)	144, 780, 1821
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 67, 97
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 173, 482, 1326
Bse118I	RCCGGY	5 cut(s)	10, 55, 199, 443, 1326
Bse1I	ACTGG	6 cut(s)	720, 1059, 1129, 1533, 1596, 2257
Bse21I	CCTNAGG	1 cut(s)	2193
Bse3DI	GCAATG	2 cut(s)	2004, 2073
BseBI	CCWGG	4 cut(s)	665, 1343, 1404, 2296
BseDI	CCNNGG	3 cut(s)	144, 780, 1821
BseGI	GGATG	3 cut(s)	889, 1055, 2287
BseLI	CCNNNNNNNGG	4 cut(s)	55, 173, 482, 1326
BseMI	GCAATG	2 cut(s)	2004, 2073
BseMII	CTCAG	3 cut(s)	1084, 1694, 2184
BseNI	ACTGG	6 cut(s)	720, 1059, 1129, 1533, 1596, 2257
BseRI	GAGGAG	2 cut(s)	33, 369
BseSI	GKGCMC	3 cut(s)	742, 1542, 2086
BseXI	GCAGC	2 cut(s)	1282, 1285
BseYI	CCCAGC	3 cut(s)	475, 635, 1541
BsgI	GTGCAG	1 cut(s)	1806
Bsh1236I	CGCG	3 cut(s)	107, 1199, 1201
Bsh1285I	CGRYCG	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	7
BshTI	ACCGGT	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	1852
BsiSI	CCGG	6 cut(s)	11, 56, 146, 200, 444, 1327
BslI	CCNNNNNNNGG	4 cut(s)	55, 173, 482, 1326
BsmAI	GTCTC	4 cut(s)	274, 1012, 1523, 2164
BsmBI	CGTCTC	1 cut(s)	274
Bso31I	GGTCTC	1 cut(s)	1523
Bsp120I	GGGCCC	2 cut(s)	738, 1538
Bsp1286I	GDGCHC	4 cut(s)	742, 1542, 1852, 2086
Bsp1407I	TGTACA	1 cut(s)	2145
Bsp143I	GATC	7 cut(s)	458, 851, 897, 1513, 1832, 1928, 2101
BspCNI	CTCAG	3 cut(s)	1083, 1693, 2185
BspFNI	CGCG	3 cut(s)	107, 1199, 1201
BspLI	GGNNCC	6 cut(s)	9, 15, 739, 740, 1044, 1540
BspMI	ACCTGC	2 cut(s)	1576, 2200
BspOI	GCTAGC	1 cut(s)	1962
BspPI	GGATC	3 cut(s)	466, 859, 2096
BspT107I	GGYRCC	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	1523
BsrDI	GCAATG	2 cut(s)	2004, 2073
BsrFI	RCCGGY	5 cut(s)	10, 55, 199, 443, 1326
BsrGI	TGTACA	1 cut(s)	2145
BsrI	ACTGG	6 cut(s)	720, 1059, 1129, 1533, 1596, 2257
BssAI	RCCGGY	5 cut(s)	10, 55, 199, 443, 1326
BssECI	CCNNGG	3 cut(s)	144, 780, 1821
BssMI	GATC	7 cut(s)	458, 851, 897, 1513, 1832, 1928, 2101
BssNI	GRCGYC	3 cut(s)	8, 149, 1129
BssSI	CACGAG	1 cut(s)	1452
BssT1I	CCWWGG	2 cut(s)	780, 1821
Bst2BI	CACGAG	1 cut(s)	1452
Bst2UI	CCWGG	4 cut(s)	665, 1343, 1404, 2296
Bst4CI	ACNGT	5 cut(s)	887, 908, 1424, 1898, 2150
Bst6I	CTCTTC	2 cut(s)	507, 1908
BstACI	GRCGYC	3 cut(s)	8, 149, 1129
BstAPI	GCANNNNNTGC	1 cut(s)	959
BstAUI	TGTACA	1 cut(s)	2145
BstDEI	CTNAG	4 cut(s)	988, 1070, 1680, 2193
BstF5I	GGATG	3 cut(s)	889, 1055, 2287
BstFNI	CGCG	3 cut(s)	107, 1199, 1201
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	3 cut(s)	10, 1201, 1295
BstKTI	GATC	7 cut(s)	461, 854, 900, 1516, 1835, 1931, 2104
BstMAI	GTCTC	4 cut(s)	274, 1012, 1523, 2164
BstMBI	GATC	7 cut(s)	458, 851, 897, 1513, 1832, 1928, 2101
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	6 cut(s)	175, 959, 983, 1295, 1793, 2174
BstNI	CCWGG	4 cut(s)	665, 1343, 1404, 2296
BstNSI	RCATGY	3 cut(s)	1474, 1679, 1712
BstSCI	CCNGG	5 cut(s)	144, 663, 1341, 1402, 2294
BstSFI	CTRYAG	1 cut(s)	846
BstSLI	GKGCMC	3 cut(s)	742, 1542, 2086
BstUI	CGCG	3 cut(s)	107, 1199, 1201
BstV1I	GCAGC	2 cut(s)	1282, 1285
BstV2I	GAAGAC	2 cut(s)	1081, 1473
BstX2I	RGATCY	2 cut(s)	851, 1928
BstXI	CCANNNNNNTGG	1 cut(s)	1273
BstYI	RGATCY	2 cut(s)	851, 1928
Bsu36I	CCTNAGG	1 cut(s)	2193
BsuI	GTATCC	3 cut(s)	716, 1028, 2362
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	889, 1055, 2287
BtsI	GCAGTG	1 cut(s)	1552
BtsIMutI	CAGTG	6 cut(s)	713, 1066, 1078, 1158, 1540, 1552
BveI	ACCTGC	2 cut(s)	1576, 2200
CfoI	GCGC	3 cut(s)	10, 1201, 1295
Cfr10I	RCCGGY	5 cut(s)	10, 55, 199, 443, 1326
Cfr13I	GGNCC	7 cut(s)	13, 347, 738, 739, 1538, 1539, 2255
CseI	GACGC	4 cut(s)	96, 138, 1137, 1298
CsiI	ACCWGGT	2 cut(s)	1402, 2294
Csp6I	GTAC	6 cut(s)	242, 1346, 1818, 2046, 2146, 2217
CspAI	ACCGGT	1 cut(s)	443
CviQI	GTAC	6 cut(s)	242, 1346, 1818, 2046, 2146, 2217
DdeI	CTNAG	4 cut(s)	988, 1070, 1680, 2193
DinI	GGCGCC	1 cut(s)	9
DpnI	GATC	7 cut(s)	460, 853, 899, 1515, 1834, 1930, 2103
DpnII	GATC	7 cut(s)	458, 851, 897, 1513, 1832, 1928, 2101
DraI	TTTAAA	1 cut(s)	2233
DraIII	CACNNNGTG	1 cut(s)	2170
DriI	GACNNNNNGTC	1 cut(s)	916
EaeI	YGGCCR	5 cut(s)	57, 255, 824, 1328, 1555
Eam1104I	CTCTTC	2 cut(s)	507, 1908
Eam1105I	GACNNNNNGTC	1 cut(s)	916
EarI	CTCTTC	2 cut(s)	507, 1908
EciI	GGCGGA	2 cut(s)	42, 75
Eco130I	CCWWGG	2 cut(s)	780, 1821
Eco147I	AGGCCT	1 cut(s)	1189
Eco24I	GRGCYC	2 cut(s)	742, 1542
Eco31I	GGTCTC	1 cut(s)	1523
Eco32I	GATATC	1 cut(s)	1606
Eco57I	CTGAAG	2 cut(s)	369, 2020
Eco81I	CCTNAGG	1 cut(s)	2193
EcoO109I	RGGNCCY	1 cut(s)	738
EcoRI	GAATTC	3 cut(s)	591, 659, 1759
EcoRII	CCWGG	4 cut(s)	663, 1341, 1402, 2294
EcoRV	GATATC	1 cut(s)	1606
EcoT14I	CCWWGG	2 cut(s)	780, 1821
EcoT22I	ATGCAT	1 cut(s)	1057
EcoT38I	GRGCYC	2 cut(s)	742, 1542
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
ErhI	CCWWGG	2 cut(s)	780, 1821
Esp3I	CGTCTC	1 cut(s)	274
FauI	CCCGC	1 cut(s)	1328
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	8 cut(s)	89, 113, 137, 167, 451, 1296, 1299, 1324
FokI	GGATG	3 cut(s)	876, 1042, 2274
FriOI	GRGCYC	2 cut(s)	742, 1542
Fsp4HI	GCNGC	8 cut(s)	89, 113, 137, 167, 451, 1296, 1299, 1324
FspBI	CTAG	4 cut(s)	1496, 1511, 1575, 1959
GlaI	GCGC	3 cut(s)	9, 1200, 1294
GluI	GCNGC	8 cut(s)	89, 113, 137, 167, 451, 1296, 1299, 1324
GsaI	CCCAGC	3 cut(s)	479, 639, 1545
GsuI	CTGGAG	2 cut(s)	1249, 1359
HaeII	RGCGCY	1 cut(s)	11
HapII	CCGG	6 cut(s)	11, 56, 146, 200, 444, 1327
HgaI	GACGC	4 cut(s)	96, 138, 1137, 1298
HhaI	GCGC	3 cut(s)	10, 1201, 1295
Hin1I	GRCGYC	3 cut(s)	8, 149, 1129
Hin6I	GCGC	3 cut(s)	8, 1199, 1293
HinP1I	GCGC	3 cut(s)	8, 1199, 1293
HincII	GTYRAC	1 cut(s)	320
HindII	GTYRAC	1 cut(s)	320
HinfI	GANTC	3 cut(s)	311, 1877, 2332
HpaII	CCGG	6 cut(s)	11, 56, 146, 200, 444, 1327
HphI	GGTGA	2 cut(s)	30, 1592
Hpy166II	GTNNAC	5 cut(s)	21, 153, 320, 431, 644
Hpy188I	TCNGA	8 cut(s)	218, 279, 463, 493, 1084, 1432, 1768, 2039
Hpy8I	GTNNAC	5 cut(s)	21, 153, 320, 431, 644
Hpy99I	CGWCG	2 cut(s)	112, 190
HpyAV	CCTTC	5 cut(s)	393, 1165, 1355, 1385, 2359
HpyCH4III	ACNGT	5 cut(s)	887, 908, 1424, 1898, 2150
HpyF10VI	GCNNNNNNNGC	6 cut(s)	175, 959, 983, 1295, 1793, 2174
HpyF3I	CTNAG	4 cut(s)	988, 1070, 1680, 2193
Hsp92I	GRCGYC	3 cut(s)	8, 149, 1129
HspAI	GCGC	3 cut(s)	8, 1199, 1293
KasI	GGCGCC	1 cut(s)	7
KroI	GCCGGC	3 cut(s)	10, 55, 1326
KroNI	GCCGGC	3 cut(s)	12, 57, 1328
Kzo9I	GATC	7 cut(s)	458, 851, 897, 1513, 1832, 1928, 2101
LmnI	GCTCC	4 cut(s)	76, 382, 652, 1048
Lsp1109I	GCAGC	2 cut(s)	1282, 1285
LweI	GCATC	2 cut(s)	1064, 2296
MabI	ACCWGGT	2 cut(s)	1402, 2294
MaeI	CTAG	4 cut(s)	1496, 1511, 1575, 1959
MaeIII	GTNAC	2 cut(s)	908, 1728
MalI	GATC	7 cut(s)	460, 853, 899, 1515, 1834, 1930, 2103
MboI	GATC	7 cut(s)	458, 851, 897, 1513, 1832, 1928, 2101
MflI	RGATCY	2 cut(s)	851, 1928
MhlI	GDGCHC	4 cut(s)	742, 1542, 1852, 2086
MlsI	TGGCCA	3 cut(s)	257, 826, 1557
MluNI	TGGCCA	3 cut(s)	257, 826, 1557
Mly113I	GGCGCC	1 cut(s)	8
MlyI	GAGTC	2 cut(s)	320, 1886
MmeI	TCCRAC	4 cut(s)	196, 567, 700, 795
Mox20I	TGGCCA	3 cut(s)	257, 826, 1557
Mph1103I	ATGCAT	1 cut(s)	1057
MroNI	GCCGGC	3 cut(s)	10, 55, 1326
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	3 cut(s)	257, 826, 1557
MseI	TTAA	7 cut(s)	341, 621, 684, 1385, 2232, 2304, 2339
MslI	CAYNNNNRTG	2 cut(s)	795, 2347
Msp20I	TGGCCA	3 cut(s)	257, 826, 1557
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	6 cut(s)	11, 56, 146, 200, 444, 1327
MspR9I	CCNGG	5 cut(s)	146, 665, 1343, 1404, 2296
MvaI	CCWGG	4 cut(s)	665, 1343, 1404, 2296
MvnI	CGCG	3 cut(s)	107, 1199, 1201
MwoI	GCNNNNNNNGC	6 cut(s)	175, 959, 983, 1295, 1793, 2174
NaeI	GCCGGC	3 cut(s)	12, 57, 1328
NarI	GGCGCC	1 cut(s)	8
NciI	CCSGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	7 cut(s)	458, 851, 897, 1513, 1832, 1928, 2101
NgoMIV	GCCGGC	3 cut(s)	10, 55, 1326
NheI	GCTAGC	1 cut(s)	1958
NlaIV	GGNNCC	6 cut(s)	9, 15, 739, 740, 1044, 1540
NmuCI	GTSAC	1 cut(s)	908
NsiI	ATGCAT	1 cut(s)	1057
NspI	RCATGY	3 cut(s)	1474, 1679, 1712
PaeI	GCATGC	1 cut(s)	1679
PceI	AGGCCT	1 cut(s)	1189
PciI	ACATGT	1 cut(s)	1470
PdiI	GCCGGC	3 cut(s)	12, 57, 1328
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	2332
PflMI	CCANNNNNTGG	1 cut(s)	482
PinAI	ACCGGT	1 cut(s)	443
PkrI	GCNGC	8 cut(s)	90, 114, 138, 168, 452, 1297, 1300, 1325
PleI	GAGTC	2 cut(s)	319, 1885
PluTI	GGCGCC	1 cut(s)	11
PpsI	GAGTC	2 cut(s)	319, 1885
PscI	ACATGT	1 cut(s)	1470
PshBI	ATTAAT	1 cut(s)	684
Psp6I	CCWGG	4 cut(s)	663, 1341, 1402, 2294
PspFI	CCCAGC	3 cut(s)	475, 635, 1541
PspGI	CCWGG	4 cut(s)	663, 1341, 1402, 2294
PspN4I	GGNNCC	6 cut(s)	9, 15, 739, 740, 1044, 1540
PspOMI	GGGCCC	2 cut(s)	738, 1538
PspPI	GGNCC	7 cut(s)	13, 347, 738, 739, 1538, 1539, 2255
PsuI	RGATCY	2 cut(s)	851, 1928
PvuII	CAGCTG	1 cut(s)	628
RsaI	GTAC	6 cut(s)	243, 1347, 1819, 2047, 2147, 2218
RsaNI	GTAC	6 cut(s)	242, 1346, 1818, 2046, 2146, 2217
RseI	CAYNNNNRTG	2 cut(s)	795, 2347
SaqAI	TTAA	7 cut(s)	341, 621, 684, 1385, 2232, 2304, 2339
SatI	GCNGC	8 cut(s)	89, 113, 137, 167, 451, 1296, 1299, 1324
Sau3AI	GATC	7 cut(s)	458, 851, 897, 1513, 1832, 1928, 2101
Sau96I	GGNCC	7 cut(s)	13, 347, 738, 739, 1538, 1539, 2255
ScaI	AGTACT	1 cut(s)	2047
SchI	GAGTC	2 cut(s)	320, 1886
ScrFI	CCNGG	5 cut(s)	146, 665, 1343, 1404, 2296
SduI	GDGCHC	4 cut(s)	742, 1542, 1852, 2086
SexAI	ACCWGGT	2 cut(s)	1402, 2294
SfaNI	GCATC	2 cut(s)	1064, 2296
SfcI	CTRYAG	1 cut(s)	846
SfoI	GGCGCC	1 cut(s)	9
SmiMI	CAYNNNNRTG	2 cut(s)	795, 2347
SmlI	CTYRAG	2 cut(s)	1851, 2327
SmoI	CTYRAG	2 cut(s)	1851, 2327
SphI	GCATGC	1 cut(s)	1679
SseBI	AGGCCT	1 cut(s)	1189
SspDI	GGCGCC	1 cut(s)	7
SspI	AATATT	1 cut(s)	928
SspMI	CTAG	4 cut(s)	1496, 1511, 1575, 1959
StuI	AGGCCT	1 cut(s)	1189
StyD4I	CCNGG	5 cut(s)	144, 663, 1341, 1402, 2294
StyI	CCWWGG	2 cut(s)	780, 1821
TaaI	ACNGT	5 cut(s)	887, 908, 1424, 1898, 2150
TaqI	TCGA	2 cut(s)	1351, 1608
TatI	WGTACW	2 cut(s)	2045, 2145
TauI	GCSGC	6 cut(s)	91, 115, 139, 169, 453, 1326
TfiI	GAWTC	1 cut(s)	2332
Tru1I	TTAA	7 cut(s)	341, 621, 684, 1385, 2232, 2304, 2339
Tru9I	TTAA	7 cut(s)	341, 621, 684, 1385, 2232, 2304, 2339
TscAI	CASTG	6 cut(s)	720, 1066, 1078, 1165, 1540, 1552
TseFI	GTSAC	1 cut(s)	908
TseI	GCWGC	2 cut(s)	1295, 1298
Tsp45I	GTSAC	1 cut(s)	908
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	6 cut(s)	720, 1066, 1078, 1165, 1540, 1552
Van91I	CCANNNNNTGG	1 cut(s)	482
VspI	ATTAAT	1 cut(s)	684
XapI	RAATTY	6 cut(s)	591, 659, 785, 1478, 1759, 2058
XceI	RCATGY	3 cut(s)	1474, 1679, 1712
XcmI	CCANNNNNNNNNTGG	3 cut(s)	778, 819, 1018
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	4 cut(s)	1496, 1511, 1575, 1959
ZrmI	AGTACT	1 cut(s)	2047
Zsp2I	ATGCAT	1 cut(s)	1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.