Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Forward (+)

60853928 .. 60941686

Gene Structure 87759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG419900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGAACTTTTGGATACTTGGCTCCTGAATATGCATCCAGTGGAAAGCTCAGTGATAAGTCAGATGTCTTCTCATTCGGGGTCGTGCTATTGGAATTGATTACTGGACGCCAACCCATTGATAAAACTCATTCCTTCACTGATGATAGCATGGTTGAGTGGGCAAGGCCTTTGCTCGCGCGAGCATTGGAAAAGGGAAACTTTGATGGTCTTGTTGATGAAAGGTTGCAGAATGATTACAACTCCAGCGAAATGGCTCGTATGATTGCCTGCGCTGCTGCTTCTGTGCGTCATTCTGCCCGCCGTCGGCCAAAAATGAGCCAGGTACTTCGAGCTTTGGAAGGCAATCTTTCTCCAGATGAATTAAATGAAGGAGTTATACCAGGTCAAAGTATGATATACAGTTCCTCTGAAAGCACAAAATACAGCACTCGTGAATACAAGGAAGACATGTTGAAATTTAGAAAGTTCGCACTAGAAAGCCAAGAGCTAGATCAAGGAATTAGTGAGACCAGTGGGCCCAGCAGTGATTTTGGCCAGCACCAATCTGCCTCTAGTGGTGAAAGCCAACAAACCAGTCAAGATATCGAACACGGGCGAATGGACAAAGACAGCCAAGACTATGGTAAAAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

212

Amino Acids

23.5

Weight (kDa)

5.0

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 89	4.9e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 110	2.6e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	179, 181
AciI	CCGC	1 cut(s)	301
AcoI	YGGCCR	2 cut(s)	308, 535
AcsI	RAATTY	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	109
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	306
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	1 cut(s)	457
AjnI	CCWGG	2 cut(s)	321, 382
AluBI	AGCT	4 cut(s)	49, 335, 490, 633
AluI	AGCT	4 cut(s)	49, 335, 490, 633
Alw26I	GTCTC	1 cut(s)	503
AoxI	GGCC	4 cut(s)	167, 308, 518, 535
ApaI	GGGCCC	1 cut(s)	522
ApeKI	GCWGC	2 cut(s)	275, 278
ApoI	RAATTY	1 cut(s)	458
AspLEI	GCGC	2 cut(s)	181, 275
AspS9I	GGNCC	2 cut(s)	518, 519
AsuHPI	GGTGA	1 cut(s)	572
BaeGI	GKGCMC	1 cut(s)	522
BalI	TGGCCA	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	522
BarI	GAAGNNNNNNTAC	2 cut(s)	363, 395
BauI	CACGAG	1 cut(s)	432
BbsI	GAAGAC	2 cut(s)	61, 453
BbvI	GCAGC	2 cut(s)	262, 265
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	2 cut(s)	323, 384
BciVI	GTATCC	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	503
BfaI	CTAG	3 cut(s)	476, 491, 555
BfuI	GTATCC	1 cut(s)	8
BisI	GCNGC	2 cut(s)	276, 279
BlsI	GCNGC	2 cut(s)	277, 280
Bme1390I	CCNGG	2 cut(s)	323, 384
BmgT120I	GGNCC	2 cut(s)	518, 519
BmiI	GGNNCC	2 cut(s)	24, 520
BmrFI	CCNGG	2 cut(s)	323, 384
BmsI	GCATC	1 cut(s)	44
BpiI	GAAGAC	2 cut(s)	61, 453
BpmI	CTGGAG	2 cut(s)	229, 339
BsaHI	GRCGYC	1 cut(s)	109
BsaI	GGTCTC	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	4 cut(s)	39, 109, 513, 576
BseBI	CCWGG	2 cut(s)	323, 384
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	4 cut(s)	39, 109, 513, 576
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	262, 265
BseYI	CCCAGC	1 cut(s)	521
Bsh1236I	CGCG	2 cut(s)	179, 181
BshFI	GGCC	4 cut(s)	169, 310, 520, 537
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	503
BsnI	GGCC	4 cut(s)	169, 310, 520, 537
Bso31I	GGTCTC	1 cut(s)	503
Bsp120I	GGGCCC	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	1 cut(s)	493
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	4 cut(s)	169, 310, 520, 537
BspCNI	CTCAG	1 cut(s)	63
BspFNI	CGCG	2 cut(s)	179, 181
BspLI	GGNNCC	2 cut(s)	24, 520
BspTNI	GGTCTC	1 cut(s)	503
BsrI	ACTGG	4 cut(s)	39, 109, 513, 576
BssMI	GATC	1 cut(s)	493
BssNI	GRCGYC	1 cut(s)	109
BssSI	CACGAG	1 cut(s)	432
Bst2BI	CACGAG	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	323, 384
Bst4CI	ACNGT	1 cut(s)	404
BstACI	GRCGYC	1 cut(s)	109
BstC8I	GCNNGC	5 cut(s)	177, 183, 271, 301, 539
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	35
BstFNI	CGCG	2 cut(s)	179, 181
BstHHI	GCGC	2 cut(s)	181, 275
BstKTI	GATC	1 cut(s)	496
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	1 cut(s)	493
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	2 cut(s)	323, 384
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	2 cut(s)	321, 382
BstSLI	GKGCMC	1 cut(s)	522
BstUI	CGCG	2 cut(s)	179, 181
BstV1I	GCAGC	2 cut(s)	262, 265
BstV2I	GAAGAC	2 cut(s)	61, 453
BstXI	CCANNNNNNTGG	2 cut(s)	253, 623
BsuI	GTATCC	1 cut(s)	8
BsuRI	GGCC	4 cut(s)	169, 310, 520, 537
BtsCI	GGATG	1 cut(s)	35
BtsI	GCAGTG	1 cut(s)	532
BtsIMutI	CAGTG	5 cut(s)	46, 58, 138, 520, 532
Cac8I	GCNNGC	5 cut(s)	177, 183, 271, 301, 539
CfoI	GCGC	2 cut(s)	181, 275
Cfr13I	GGNCC	2 cut(s)	518, 519
CseI	GACGC	2 cut(s)	117, 278
CsiI	ACCWGGT	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	2 cut(s)	151, 451
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
EaeI	YGGCCR	2 cut(s)	308, 535
Eco147I	AGGCCT	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	522
Eco31I	GGTCTC	1 cut(s)	503
Eco32I	GATATC	1 cut(s)	586
EcoRII	CCWGG	2 cut(s)	321, 382
EcoRV	GATATC	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	522
FaeI	CATG	2 cut(s)	154, 454
FaiI	YATR	8 cut(s)	33, 152, 263, 380, 395, 400, 452, 624
FalI	AAGNNNNNCTT	4 cut(s)	185, 217, 333, 365
FatI	CATG	2 cut(s)	150, 450
FauI	CCCGC	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	276, 279
FokI	GGATG	1 cut(s)	22
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	2 cut(s)	276, 279
FspBI	CTAG	3 cut(s)	476, 491, 555
GlaI	GCGC	2 cut(s)	180, 274
GluI	GCNGC	2 cut(s)	276, 279
GsaI	CCCAGC	1 cut(s)	525
GsuI	CTGGAG	2 cut(s)	229, 339
HaeIII	GGCC	4 cut(s)	169, 310, 520, 537
HgaI	GACGC	2 cut(s)	117, 278
HhaI	GCGC	2 cut(s)	181, 275
Hin1I	GRCGYC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	154, 454
Hin6I	GCGC	2 cut(s)	179, 273
HinP1I	GCGC	2 cut(s)	179, 273
HphI	GGTGA	1 cut(s)	572
Hpy188I	TCNGA	2 cut(s)	64, 412
Hpy188III	TCNNGA	5 cut(s)	26, 356, 434, 581, 636
Hpy99I	CGWCG	1 cut(s)	309
HpyAV	CCTTC	3 cut(s)	145, 335, 365
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4V	TGCA	2 cut(s)	35, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	154, 454
HspAI	GCGC	2 cut(s)	179, 273
Kzo9I	GATC	1 cut(s)	493
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	2 cut(s)	262, 265
LweI	GCATC	1 cut(s)	44
MabI	ACCWGGT	1 cut(s)	382
MaeI	CTAG	3 cut(s)	476, 491, 555
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MboII	GAAGA	2 cut(s)	61, 458
MhlI	GDGCHC	1 cut(s)	522
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	4 cut(s)	95, 362, 458, 501
MluNI	TGGCCA	1 cut(s)	537
MnlI	CCTC	2 cut(s)	418, 562
Mox20I	TGGCCA	1 cut(s)	537
Mph1103I	ATGCAT	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	537
MspR9I	CCNGG	2 cut(s)	323, 384
MvaI	CCWGG	2 cut(s)	323, 384
MvnI	CGCG	2 cut(s)	179, 181
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	1 cut(s)	493
NlaIII	CATG	2 cut(s)	154, 454
NlaIV	GGNNCC	2 cut(s)	24, 520
NsiI	ATGCAT	1 cut(s)	37
NspI	RCATGY	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	169
PciI	ACATGT	1 cut(s)	450
PkrI	GCNGC	2 cut(s)	277, 280
PscI	ACATGT	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	321, 382
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	2 cut(s)	321, 382
PspN4I	GGNNCC	2 cut(s)	24, 520
PspOMI	GGGCCC	1 cut(s)	518
PspPI	GGNCC	2 cut(s)	518, 519
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	2 cut(s)	276, 279
Sau3AI	GATC	1 cut(s)	493
Sau96I	GGNCC	2 cut(s)	518, 519
ScrFI	CCNGG	2 cut(s)	323, 384
SduI	GDGCHC	1 cut(s)	522
SetI	ASST	7 cut(s)	51, 227, 327, 337, 388, 492, 635
SexAI	ACCWGGT	1 cut(s)	382
SfaNI	GCATC	1 cut(s)	44
Sse9I	AATT	4 cut(s)	95, 362, 458, 501
SseBI	AGGCCT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	3 cut(s)	476, 491, 555
StuI	AGGCCT	1 cut(s)	169
StyD4I	CCNGG	2 cut(s)	321, 382
TaaI	ACNGT	1 cut(s)	404
TaqI	TCGA	2 cut(s)	331, 588
TasI	AATT	4 cut(s)	95, 362, 458, 501
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	5 cut(s)	46, 58, 145, 520, 532
TseI	GCWGC	2 cut(s)	275, 278
TspDTI	ATGAA	3 cut(s)	234, 375, 384
TspRI	CASTG	5 cut(s)	46, 58, 145, 520, 532
XapI	RAATTY	1 cut(s)	458
XceI	RCATGY	1 cut(s)	454
XspI	CTAG	3 cut(s)	476, 491, 555
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.