Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8362561.1

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1087

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8362561.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 482 bp

ctccttggacagggtgggtttggatatgttcacaaaggagttcttcccaatgggaaggaagtagcggtcaagcagctgaaggctggaagtgggcaaggggaacgtgaattccaggcagaagttgaaattattagccgtgtacatcacagacatctggtttcgctggttggatactgcatgactggatccgagagactacttgtctatgaatttgttccaaataacactatggagttccacttacatggaaaagggagacctaccatggattggtccacaagactgaaaatcgctttaggatctgcaaaaggactggcatatcttcatgaggattgtcatcctaaaatcattcatcgtgatatcaaggcagctaatatacttttggatttcaagtttgagtgcaaggttgcagactttggtcttgccaagctttcttctgatcttaatactcatgtttccacccgagtgatggggacttttgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

161

Amino Acids

17.83

Weight (kDa)

9.02

Isoelectric Point (pI)

20.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	270
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	3 cut(s)	180, 193, 307
AcsI	RAATTY	2 cut(s)	107, 209
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	3 cut(s)	10, 270, 469
AgsI	TTSAA	2 cut(s)	125, 391
AhdI	GACNNNNNGTC	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	111
AleI	CACNNNNGTG	1 cut(s)	464
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	3 cut(s)	76, 371, 430
AluI	AGCT	3 cut(s)	76, 371, 430
Alw26I	GTCTC	2 cut(s)	187, 250
AlwI	GGATC	3 cut(s)	180, 193, 307
Ama87I	CYCGRG	1 cut(s)	462
ApeKI	GCWGC	2 cut(s)	73, 368
ApoI	RAATTY	2 cut(s)	107, 209
Asp700I	GAANNNNTTC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	273
AvaI	CYCGRG	1 cut(s)	462
AvaII	GGWCC	1 cut(s)	273
BamHI	GGATCC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	85, 380
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	113
BciVI	GTATCC	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	187, 250
BfuI	GTATCC	1 cut(s)	164
BisI	GCNGC	2 cut(s)	74, 369
BlsI	GCNGC	2 cut(s)	75, 370
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	273
BmeRI	GACNNNNNGTC	1 cut(s)	200
BmeT110I	CYCGRG	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	113
BoxI	GACNNNNGTC	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	2 cut(s)	4, 264
Bsc4I	CCNNNNNNNGG	3 cut(s)	10, 270, 469
Bse1I	ACTGG	2 cut(s)	187, 318
Bse8I	GATNNNNATC	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	4, 264
BseGI	GGATG	1 cut(s)	337
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	3 cut(s)	10, 270, 469
BseNI	ACTGG	2 cut(s)	187, 318
BseXI	GCAGC	2 cut(s)	85, 380
BsiHKCI	CYCGRG	1 cut(s)	462
BslI	CCNNNNNNNGG	3 cut(s)	10, 270, 469
BsmAI	GTCTC	2 cut(s)	187, 250
Bso31I	GGTCTC	1 cut(s)	250
BsoBI	CYCGRG	1 cut(s)	462
Bsp1407I	TGTACA	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	185, 299, 439
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	3 cut(s)	180, 193, 307
BspTNI	GGTCTC	1 cut(s)	250
BsrGI	TGTACA	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	187, 318
BssECI	CCNNGG	2 cut(s)	4, 264
BssMI	GATC	3 cut(s)	185, 299, 439
BssT1I	CCWWGG	2 cut(s)	4, 264
Bst2UI	CCWGG	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	139
BstDSI	CCRYGG	1 cut(s)	264
BstENI	CCTNNNNNAGG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	3 cut(s)	188, 302, 442
BstMAI	GTCTC	2 cut(s)	187, 250
BstMBI	GATC	3 cut(s)	185, 299, 439
BstNI	CCWGG	1 cut(s)	113
BstPAI	GACNNNNGTC	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	85, 380
BstX2I	RGATCY	2 cut(s)	185, 299
BstXI	CCANNNNNNTGG	1 cut(s)	245
BstYI	RGATCY	2 cut(s)	185, 299
BsuI	GTATCC	1 cut(s)	164
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	337
CciI	TCATGA	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	5 cut(s)	178, 245, 265, 326, 452
CviJI	RGCY	5 cut(s)	76, 83, 135, 371, 430
CviKI_1	RGCY	5 cut(s)	76, 83, 135, 371, 430
CviQI	GTAC	1 cut(s)	140
DpnI	GATC	3 cut(s)	187, 301, 441
DpnII	GATC	3 cut(s)	185, 299, 439
DriI	GACNNNNNGTC	1 cut(s)	200
Eam1105I	GACNNNNNGTC	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	4, 264
Eco31I	GGTCTC	1 cut(s)	250
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	4, 264
ErhI	CCWWGG	2 cut(s)	4, 264
FaeI	CATG	5 cut(s)	181, 248, 268, 329, 455
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FatI	CATG	5 cut(s)	177, 244, 264, 325, 451
Fnu4HI	GCNGC	2 cut(s)	74, 369
FokI	GGATG	1 cut(s)	324
Fsp4HI	GCNGC	2 cut(s)	74, 369
GluI	GCNGC	2 cut(s)	74, 369
Hin1II	CATG	5 cut(s)	181, 248, 268, 329, 455
HindIII	AAGCTT	1 cut(s)	428
Hpy166II	GTNNAC	3 cut(s)	31, 140, 276
Hpy188I	TCNGA	2 cut(s)	190, 439
Hpy188III	TCNNGA	2 cut(s)	326, 356
Hpy8I	GTNNAC	3 cut(s)	31, 140, 276
HpyAV	CCTTC	2 cut(s)	49, 73
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	4 cut(s)	177, 305, 402, 410
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	5 cut(s)	181, 248, 268, 329, 455
Kzo9I	GATC	3 cut(s)	185, 299, 439
LpnPI	CCDG	7 cut(s)	69, 98, 125, 140, 149, 168, 299
Lsp1109I	GCAGC	2 cut(s)	85, 380
MaeII	ACGT	1 cut(s)	103
MalI	GATC	3 cut(s)	187, 301, 441
MboI	GATC	3 cut(s)	185, 299, 439
MboII	GAAGA	3 cut(s)	35, 314, 426
MflI	RGATCY	2 cut(s)	185, 299
MluCI	AATT	3 cut(s)	107, 126, 209
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	2 cut(s)	243, 464
MspA1I	CMGCKG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	185, 299, 439
NlaIII	CATG	5 cut(s)	181, 248, 268, 329, 455
NlaIV	GGNNCC	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	464
PagI	TCATGA	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	270
PkrI	GCNGC	2 cut(s)	75, 370
PshAI	GACNNNNGTC	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	273
PsuI	RGATCY	2 cut(s)	185, 299
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	2 cut(s)	243, 464
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	2 cut(s)	74, 369
Sau3AI	GATC	3 cut(s)	185, 299, 439
Sau96I	GGNCC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	6 cut(s)	78, 106, 262, 373, 408, 432
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	2 cut(s)	243, 464
Sse9I	AATT	3 cut(s)	107, 126, 209
SsiI	CCGC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	2 cut(s)	4, 264
TaiI	ACGT	1 cut(s)	106
TasI	AATT	3 cut(s)	107, 126, 209
TatI	WGTACW	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TseI	GCWGC	2 cut(s)	73, 368
TspDTI	ATGAA	3 cut(s)	222, 314, 341
Van91I	CCANNNNNTGG	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	273
XagI	CCTNNNNNAGG	1 cut(s)	8
XapI	RAATTY	2 cut(s)	107, 209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.