Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Reverse (-)

29712195 .. 29717116

Gene Structure 4922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGATCAGCACTACCACGTCTCCTCCTCCTACAATGACTGGTTATGACCCCGTTTTCACTCCTACAATGACTGGTTATGTCCCGGATGCAGCTCCTACAAGCACGCCGGTCGGGGTTATAGTAGGAGTTGCGATAGGAGGGTTCAGTGTACTTGTTGTAGTGGTCATTCTCTTCTTTATCTATCGGAGACGGAAAAACAGGTTAGCGAGAGCTAATAAGTCAGGGCAACAACCCAAAGATAAACCGCCTCCAGCCTTTGGATTTTCCGAAAGCACATTTACATATGAAGAATTAGTCATGGCAACAAATGGATTCTCCAACGACAATCTTCTTGGTCAAGGAGGCTTTGGTTTTGTCCATAAAGGTATTCTTCCAGATGGGAAAGTGGTTGCAATTAAACAGCTGAAAGCTGGGAGTGGACAGGGGGAGCGTGAATTCCAGGCAGAGGTTGAAGTCATTAATCGTGTCCATCACAGACATCTTGTATCACTGGTTGGATACTGCATTAGTGGGGCCCAGAGATTACTTGTTTATGAGTTCGTTTCCAACAACACCTTGGAATTTCACTTGCATGGAAAGGGGCGACCAACTATGACTTGGCCAACAAGAATGAGAATTGCTCTAGGATCTGCAAAAGGATTGGCATATCTCCATGAGGACTGTCATCCCAAGATCATACACCGTGACATCAAGGCGGCCAATATTCTTATAGATGACAACTTTGAGGCAAAGGTTGCAGACTTTGGACTTGCCAAGTTGGCCTTAGATACAGATACTCATGTCTCTACAAGGGTTATGGGAACTTTTGGATACTTAGCTCCTGAATATGCATCCAGTGGAAAGCTCAGTGATAAGTCGGATGTCTTCTCATTCGGAGTCGTGCTGTTGGAGTTGATTACCGGACGCCAACCCATTGATAAAACTCATTCCTTCACTGATGATAGCATGGTTGAGTGGGTAGTTCGAGCTTTGGAGGGCAATCTTTCTCCAGATGAATTAAATGAAGGAGTTATACCAGGTCAAAGTATGATATACAGTTCCTCTGAAAGCACACAATACAGCACTCGTGAATACAAGGAAGACATGTTGAAATTTAGAAAGTTAGCACTAGAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

372

Amino Acids

40.91

Weight (kDa)

6.84

Isoelectric Point (pI)

25.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	106 - 309	8e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	108 - 310	4.2e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	257
AciI	CCGC	2 cut(s)	245, 695
AclWI	GGATC	1 cut(s)	634
AcoI	YGGCCR	2 cut(s)	599, 696
AcsI	RAATTY	3 cut(s)	434, 560, 1091
AcyI	GRCGYC	1 cut(s)	904
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	257, 445
AflIII	ACRYGT	1 cut(s)	1083
AgsI	TTSAA	2 cut(s)	452, 1090
AjiI	CACGTC	1 cut(s)	18
AjnI	CCWGG	2 cut(s)	438, 1015
AluBI	AGCT	7 cut(s)	92, 212, 403, 410, 818, 844, 968
AluI	AGCT	7 cut(s)	92, 212, 403, 410, 818, 844, 968
Alw26I	GTCTC	3 cut(s)	24, 181, 787
AlwI	GGATC	1 cut(s)	634
AoxI	GGCC	4 cut(s)	513, 599, 696, 759
ApaI	GGGCCC	1 cut(s)	517
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	3 cut(s)	434, 560, 1091
AseI	ATTAAT	1 cut(s)	459
AspS9I	GGNCC	2 cut(s)	513, 514
AsuC2I	CCSGG	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	517
BaeI	ACNNNNGTAYC	2 cut(s)	765, 798
BalI	TGGCCA	1 cut(s)	601
BanII	GRGCYC	1 cut(s)	517
BarI	GAAGNNNNNNTAC	2 cut(s)	996, 1028
BauI	CACGAG	1 cut(s)	1065
BbsI	GAAGAC	2 cut(s)	856, 1086
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	2 cut(s)	371, 477
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	2 cut(s)	440, 1017
BciVI	GTATCC	2 cut(s)	491, 803
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	3 cut(s)	24, 181, 787
BfaI	CTAG	2 cut(s)	623, 1109
BfuI	GTATCC	2 cut(s)	491, 803
BglI	GCCNNNNNGGC	1 cut(s)	758
BisI	GCNGC	2 cut(s)	90, 696
BlsI	GCNGC	2 cut(s)	91, 697
Bme1390I	CCNGG	3 cut(s)	83, 440, 1017
BmgBI	CACGTC	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	513, 514
BmiI	GGNNCC	2 cut(s)	514, 515
BmrFI	CCNGG	3 cut(s)	83, 440, 1017
BmsI	GCATC	2 cut(s)	76, 839
BpiI	GAAGAC	2 cut(s)	856, 1086
BplI	GAGNNNNNCTC	2 cut(s)	604, 636
BpmI	CTGGAG	2 cut(s)	234, 972
BpuMI	CCSGG	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	904
BsaJI	CCNNGG	1 cut(s)	555
BsaWI	WCCGGW	1 cut(s)	899
BsaXI	ACNNNNNCTCC	3 cut(s)	7, 34, 37
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 445
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	4 cut(s)	43, 76, 495, 834
BseBI	CCWGG	2 cut(s)	440, 1017
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	4 cut(s)	91, 664, 830, 865
BseLI	CCNNNNNNNGG	2 cut(s)	257, 445
BseMII	CTCAG	1 cut(s)	859
BseNI	ACTGG	4 cut(s)	43, 76, 495, 834
BseRI	GAGGAG	2 cut(s)	12, 15
BseSI	GKGCMC	1 cut(s)	517
BseXI	GCAGC	1 cut(s)	101
BseYI	CCCAGC	1 cut(s)	410
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	4 cut(s)	515, 601, 698, 761
BsiEI	CGRYCG	1 cut(s)	111
BsiSI	CCGG	3 cut(s)	83, 107, 900
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	257, 445
BsmAI	GTCTC	3 cut(s)	24, 181, 787
BsmBI	CGTCTC	2 cut(s)	24, 181
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	4 cut(s)	515, 601, 698, 761
Bsp120I	GGGCCC	1 cut(s)	513
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp143I	GATC	3 cut(s)	3, 626, 672
BspACI	CCGC	2 cut(s)	245, 695
BspANI	GGCC	4 cut(s)	515, 601, 698, 761
BspCNI	CTCAG	1 cut(s)	858
BspLI	GGNNCC	2 cut(s)	514, 515
BspPI	GGATC	1 cut(s)	634
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	4 cut(s)	43, 76, 495, 834
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	3 cut(s)	3, 626, 672
BssNI	GRCGYC	1 cut(s)	904
BssSI	CACGAG	1 cut(s)	1065
BssT1I	CCWWGG	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	1065
Bst2UI	CCWGG	2 cut(s)	440, 1017
Bst4CI	ACNGT	3 cut(s)	662, 683, 1037
Bst6I	CTCTTC	1 cut(s)	176
BstACI	GRCGYC	1 cut(s)	904
BstAPI	GCANNNNNTGC	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	3 cut(s)	763, 814, 845
BstF5I	GGATG	4 cut(s)	91, 664, 830, 865
BstKTI	GATC	3 cut(s)	6, 629, 675
BstMAI	GTCTC	3 cut(s)	24, 181, 787
BstMBI	GATC	3 cut(s)	3, 626, 672
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	734, 758
BstNI	CCWGG	2 cut(s)	440, 1017
BstNSI	RCATGY	1 cut(s)	1087
BstSCI	CCNGG	3 cut(s)	81, 438, 1015
BstSLI	GKGCMC	1 cut(s)	517
BstV1I	GCAGC	1 cut(s)	101
BstV2I	GAAGAC	2 cut(s)	856, 1086
BstX2I	RGATCY	1 cut(s)	626
BstYI	RGATCY	1 cut(s)	626
BsuI	GTATCC	2 cut(s)	491, 803
BsuRI	GGCC	4 cut(s)	515, 601, 698, 761
BtrI	CACGTC	1 cut(s)	18
BtsCI	GGATG	4 cut(s)	91, 664, 830, 865
BtsIMutI	CAGTG	5 cut(s)	151, 488, 841, 853, 933
Cac8I	GCNNGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	513, 514
CseI	GACGC	1 cut(s)	912
CsiI	ACCWGGT	1 cut(s)	1015
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	6 cut(s)	298, 572, 653, 779, 946, 1084
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	3 cut(s)	763, 814, 845
DpnI	GATC	3 cut(s)	5, 628, 674
DpnII	GATC	3 cut(s)	3, 626, 672
EaeI	YGGCCR	2 cut(s)	599, 696
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	517
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	434
EcoRII	CCWGG	2 cut(s)	438, 1015
EcoT14I	CCWWGG	1 cut(s)	555
EcoT22I	ATGCAT	1 cut(s)	832
EcoT38I	GRGCYC	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	555
Esp3I	CGTCTC	2 cut(s)	24, 181
FaeI	CATG	6 cut(s)	301, 575, 656, 782, 949, 1087
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 746, 778
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	6 cut(s)	297, 571, 652, 778, 945, 1083
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	90, 696
FokI	GGATG	4 cut(s)	98, 651, 817, 872
FriOI	GRGCYC	1 cut(s)	517
Fsp4HI	GCNGC	2 cut(s)	90, 696
FspBI	CTAG	2 cut(s)	623, 1109
GluI	GCNGC	2 cut(s)	90, 696
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	2 cut(s)	234, 972
HaeIII	GGCC	4 cut(s)	515, 601, 698, 761
HapII	CCGG	3 cut(s)	83, 107, 900
HgaI	GACGC	1 cut(s)	912
Hin1I	GRCGYC	1 cut(s)	904
Hin1II	CATG	6 cut(s)	301, 575, 656, 782, 949, 1087
HinfI	GANTC	2 cut(s)	312, 876
HpaII	CCGG	3 cut(s)	83, 107, 900
Hpy166II	GTNNAC	2 cut(s)	149, 419
Hpy188I	TCNGA	5 cut(s)	186, 268, 859, 875, 1045
Hpy188III	TCNNGA	4 cut(s)	374, 821, 989, 1067
Hpy8I	GTNNAC	2 cut(s)	149, 419
HpyAV	CCTTC	2 cut(s)	940, 998
HpyCH4III	ACNGT	3 cut(s)	662, 683, 1037
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	7 cut(s)	89, 392, 504, 571, 632, 737, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	734, 758
HpyF3I	CTNAG	3 cut(s)	763, 814, 845
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	1 cut(s)	904
Hsp92II	CATG	6 cut(s)	301, 575, 656, 782, 949, 1087
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 626, 672
LmnI	GCTCC	3 cut(s)	97, 427, 823
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	2 cut(s)	76, 839
MabI	ACCWGGT	1 cut(s)	1015
MaeI	CTAG	2 cut(s)	623, 1109
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	3 cut(s)	5, 628, 674
MboI	GATC	3 cut(s)	3, 626, 672
MboII	GAAGA	6 cut(s)	163, 299, 320, 362, 856, 1091
MflI	RGATCY	1 cut(s)	626
MhlI	GDGCHC	1 cut(s)	517
MlsI	TGGCCA	1 cut(s)	601
MluCI	AATT	7 cut(s)	290, 393, 434, 560, 615, 995, 1091
MluNI	TGGCCA	1 cut(s)	601
MlyI	GAGTC	1 cut(s)	885
MmeI	TCCRAC	5 cut(s)	342, 475, 570, 837, 867
Mox20I	TGGCCA	1 cut(s)	601
Mph1103I	ATGCAT	1 cut(s)	832
MscI	TGGCCA	1 cut(s)	601
MseI	TTAA	3 cut(s)	396, 459, 998
MslI	CAYNNNNRTG	1 cut(s)	570
Msp20I	TGGCCA	1 cut(s)	601
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	3 cut(s)	83, 107, 900
MspR9I	CCNGG	3 cut(s)	83, 440, 1017
MvaI	CCWGG	2 cut(s)	440, 1017
MwoI	GCNNNNNNNGC	2 cut(s)	734, 758
NciI	CCSGG	1 cut(s)	83
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	3 cut(s)	3, 626, 672
NlaIII	CATG	6 cut(s)	301, 575, 656, 782, 949, 1087
NlaIV	GGNNCC	2 cut(s)	514, 515
NmuCI	GTSAC	1 cut(s)	683
NsiI	ATGCAT	1 cut(s)	832
NspI	RCATGY	1 cut(s)	1087
PciI	ACATGT	1 cut(s)	1083
PfeI	GAWTC	1 cut(s)	312
PflMI	CCANNNNNTGG	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	81
PkrI	GCNGC	2 cut(s)	91, 697
PleI	GAGTC	1 cut(s)	884
PpsI	GAGTC	1 cut(s)	884
PscI	ACATGT	1 cut(s)	1083
PshBI	ATTAAT	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	438, 1015
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	2 cut(s)	438, 1015
PspN4I	GGNNCC	2 cut(s)	514, 515
PspOMI	GGGCCC	1 cut(s)	513
PspPI	GGNCC	2 cut(s)	513, 514
PsuI	RGATCY	1 cut(s)	626
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	3 cut(s)	396, 459, 998
SatI	GCNGC	2 cut(s)	90, 696
Sau3AI	GATC	3 cut(s)	3, 626, 672
Sau96I	GGNCC	2 cut(s)	513, 514
SchI	GAGTC	1 cut(s)	885
ScrFI	CCNGG	3 cut(s)	83, 440, 1017
SduI	GDGCHC	1 cut(s)	517
SexAI	ACCWGGT	1 cut(s)	1015
SfaNI	GCATC	2 cut(s)	76, 839
SmiMI	CAYNNNNRTG	1 cut(s)	570
Sse9I	AATT	7 cut(s)	290, 393, 434, 560, 615, 995, 1091
SsiI	CCGC	2 cut(s)	245, 695
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	2 cut(s)	623, 1109
StyD4I	CCNGG	3 cut(s)	81, 438, 1015
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	3 cut(s)	662, 683, 1037
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	964
TasI	AATT	7 cut(s)	290, 393, 434, 560, 615, 995, 1091
TatI	WGTACW	1 cut(s)	148
TauI	GCSGC	1 cut(s)	698
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	3 cut(s)	396, 459, 998
Tru9I	TTAA	3 cut(s)	396, 459, 998
TscAI	CASTG	5 cut(s)	151, 495, 841, 853, 940
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	683
TspDTI	ATGAA	3 cut(s)	300, 1008, 1017
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	5 cut(s)	151, 495, 841, 853, 940
Van91I	CCANNNNNTGG	1 cut(s)	257
VspI	ATTAAT	1 cut(s)	459
XapI	RAATTY	3 cut(s)	434, 560, 1091
XceI	RCATGY	1 cut(s)	1087
XcmI	CCANNNNNNNNNTGG	2 cut(s)	553, 594
XspI	CTAG	2 cut(s)	623, 1109
Zsp2I	ATGCAT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.