Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008467.1

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Forward (+)

42975 .. 43662

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008467.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgcagtctaaatacttagctcctgaatatgcatccagtggaaagctcagtgataaatcagatgtcttctcattcggggttgtgctattggagttgattactggacgccaacccattgataaaactcattccttcactgatgatagcatggttgagtgggcaaggcctttgcttgcgcaagcattggaaaagggaaactttgatggtcttgttgatgcaaggttgcagaatgattacaactccagcgaaatggcttgtatggttgccagcgctgctgcttgtgttcgtcattctgcctgtcgtcggccaagaatgagccaggtaatcttacaaagttccgaagttagtttgagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

118

Amino Acids

12.96

Weight (kDa)

5.6

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	106
AfeI	AGCGCT	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	303
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	3 cut(s)	20, 46, 354
AluI	AGCT	3 cut(s)	20, 46, 354
Aor51HI	AGCGCT	1 cut(s)	271
AoxI	GGCC	2 cut(s)	164, 305
ApeKI	GCWGC	2 cut(s)	272, 275
AspLEI	GCGC	2 cut(s)	178, 272
BbsI	GAAGAC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	259, 262
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	273
BisI	GCNGC	2 cut(s)	273, 276
BlsI	GCNGC	2 cut(s)	274, 277
Bme1390I	CCNGG	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	2 cut(s)	41, 205
BpiI	GAAGAC	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	2 cut(s)	36, 106
BseBI	CCWGG	1 cut(s)	320
BseGI	GGATG	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	61
BseNI	ACTGG	2 cut(s)	36, 106
BseXI	GCAGC	2 cut(s)	259, 262
BshFI	GGCC	2 cut(s)	166, 307
BslI	CCNNNNNNNGG	1 cut(s)	303
BsnI	GGCC	2 cut(s)	166, 307
BspANI	GGCC	2 cut(s)	166, 307
BspCNI	CTCAG	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	36, 106
BssNI	GRCGYC	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	106
BstC8I	GCNNGC	3 cut(s)	174, 180, 268
BstDEI	CTNAG	2 cut(s)	16, 47
BstF5I	GGATG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	2 cut(s)	178, 272
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	259, 262
BstV2I	GAAGAC	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	166, 307
BtsCI	GGATG	1 cut(s)	32
BtsIMutI	CAGTG	3 cut(s)	43, 55, 135
Cac8I	GCNNGC	3 cut(s)	174, 180, 268
CfoI	GCGC	2 cut(s)	178, 272
CseI	GACGC	1 cut(s)	114
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	7 cut(s)	20, 46, 166, 254, 307, 318, 354
CviKI_1	RGCY	7 cut(s)	20, 46, 166, 254, 307, 318, 354
DdeI	CTNAG	2 cut(s)	16, 47
EaeI	YGGCCR	1 cut(s)	305
Eco147I	AGGCCT	1 cut(s)	166
Eco47III	AGCGCT	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	34
FaeI	CATG	1 cut(s)	151
FaiI	YATR	3 cut(s)	30, 149, 260
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	273, 276
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	2 cut(s)	273, 276
FspI	TGCGCA	1 cut(s)	177
GlaI	GCGC	2 cut(s)	177, 271
GluI	GCNGC	2 cut(s)	273, 276
GsuI	CTGGAG	1 cut(s)	226
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	166, 307
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	2 cut(s)	178, 272
Hin1I	GRCGYC	1 cut(s)	106
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	2 cut(s)	176, 270
HinP1I	GCGC	2 cut(s)	176, 270
Hpy188I	TCNGA	2 cut(s)	61, 340
Hpy188III	TCNNGA	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	306
HpyAV	CCTTC	1 cut(s)	142
HpyCH4V	TGCA	4 cut(s)	4, 32, 218, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	16, 47
Hsp92I	GRCGYC	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	2 cut(s)	176, 270
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	8 cut(s)	36, 49, 87, 256, 280, 305, 310, 332
Lsp1109I	GCAGC	2 cut(s)	259, 262
LweI	GCATC	2 cut(s)	41, 205
MboII	GAAGA	1 cut(s)	58
Mph1103I	ATGCAT	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	272
NlaIII	CATG	1 cut(s)	151
NsbI	TGCGCA	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	34
PceI	AGGCCT	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	274, 277
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
SatI	GCNGC	2 cut(s)	273, 276
ScrFI	CCNGG	1 cut(s)	320
SetI	ASST	5 cut(s)	22, 48, 224, 324, 356
SfaNI	GCATC	2 cut(s)	41, 205
SseBI	AGGCCT	1 cut(s)	166
StuI	AGGCCT	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	318
TscAI	CASTG	3 cut(s)	43, 55, 142
TseI	GCWGC	2 cut(s)	272, 275
TspRI	CASTG	3 cut(s)	43, 55, 142
Zsp2I	ATGCAT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.