Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Forward (+)

56180415 .. 56182677

Gene Structure 2263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50916

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCAGATAATATTAACGTGTACTATGTATTGTATATATGTATTCTTTGTTCAGGTTGCAGACTTTGGACTTGCCAAGTTTGCCTTAGATACAGATACTCATGTCTCCACAAGGGTTATGGGAACTTTTGGATACTTAGATCCTGAATATGCAACCAGTGGAAAGCTCAGTGATAAGTCAGATGTCTTCTCATTCGGAGTCGTGCTATTGGAATTGATTACTGGACGCCAACCCATTGATAAAACTCATTCCTTCACAACTCATTCCTTCACTGATGATAGCATGGTTGAGTGGGCAAGGCCTTTGCTCGCGCGAGCATTGGAAAAGGGAAACATTGATGGTCTTGTTGATGAAAGGTTGCAGAATGATTACAACTCCAGCGAAATGGCTCGTATGATTGCCTGCGCTGCTGCTTCTGTGCGACATTCTGCCCACCGTCGGCCAAAAATGAGCCAGGCTATTACTTTGGAAGGATGTAGTTCGAGACTTCGAGCTTTGGAAGGCAATCTTTCTCCAGATGAATTAAATGAAGGAGTTATACCAGGTCAAAGTATGATATACATTTCCTCTGAAAGCACACAATACAGCACTCGTGAATACAAGGAAGACATGTTGAAATTTAGAAAGTTAGCACTAGAAAGCCAAGAGCTAGATCAAGGAATTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

222

Amino Acids

24.85

Weight (kDa)

5.15

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	16 - 91	7.1e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	17 - 93	1.2e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	311, 313
AclWI	GGATC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	617
AcyI	GRCGYC	1 cut(s)	226
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	438
AflIII	ACRYGT	2 cut(s)	17, 609
AgsI	TTSAA	1 cut(s)	616
AjnI	CCWGG	2 cut(s)	453, 541
AluBI	AGCT	4 cut(s)	166, 494, 649, 666
AluI	AGCT	4 cut(s)	166, 494, 649, 666
Alw26I	GTCTC	2 cut(s)	109, 478
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	2 cut(s)	299, 440
ApeKI	GCWGC	2 cut(s)	407, 410
ApoI	RAATTY	1 cut(s)	617
AspLEI	GCGC	2 cut(s)	313, 407
BaeI	ACNNNNGTAYC	2 cut(s)	87, 120
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BauI	CACGAG	1 cut(s)	591
BbsI	GAAGAC	2 cut(s)	178, 612
BbvI	GCAGC	2 cut(s)	394, 397
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	2 cut(s)	455, 543
BciVI	GTATCC	1 cut(s)	125
BcoDI	GTCTC	2 cut(s)	109, 478
BfaI	CTAG	3 cut(s)	635, 650, 667
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	2 cut(s)	408, 411
BlsI	GCNGC	2 cut(s)	409, 412
Bme1390I	CCNGG	2 cut(s)	455, 543
BmrFI	CCNGG	2 cut(s)	455, 543
BpiI	GAAGAC	2 cut(s)	178, 612
BpmI	CTGGAG	2 cut(s)	361, 498
BsaHI	GRCGYC	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
Bse1I	ACTGG	2 cut(s)	156, 226
BseBI	CCWGG	2 cut(s)	455, 543
BseGI	GGATG	1 cut(s)	479
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	2 cut(s)	156, 226
BseXI	GCAGC	2 cut(s)	394, 397
Bsh1236I	CGCG	2 cut(s)	311, 313
BshFI	GGCC	2 cut(s)	301, 442
BslI	CCNNNNNNNGG	1 cut(s)	438
BsmAI	GTCTC	2 cut(s)	109, 478
BsnI	GGCC	2 cut(s)	301, 442
Bsp143I	GATC	2 cut(s)	139, 652
BspANI	GGCC	2 cut(s)	301, 442
BspCNI	CTCAG	1 cut(s)	180
BspFNI	CGCG	2 cut(s)	311, 313
BspPI	GGATC	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	156, 226
BssMI	GATC	2 cut(s)	139, 652
BssNI	GRCGYC	1 cut(s)	226
BssSI	CACGAG	1 cut(s)	591
Bst2BI	CACGAG	1 cut(s)	591
Bst2UI	CCWGG	2 cut(s)	455, 543
Bst4CI	ACNGT	1 cut(s)	437
BstACI	GRCGYC	1 cut(s)	226
BstC8I	GCNNGC	3 cut(s)	309, 315, 403
BstDEI	CTNAG	3 cut(s)	85, 136, 167
BstF5I	GGATG	1 cut(s)	479
BstFNI	CGCG	2 cut(s)	311, 313
BstHHI	GCGC	2 cut(s)	313, 407
BstKTI	GATC	2 cut(s)	142, 655
BstMAI	GTCTC	2 cut(s)	109, 478
BstMBI	GATC	2 cut(s)	139, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 407
BstNI	CCWGG	2 cut(s)	455, 543
BstNSI	RCATGY	1 cut(s)	613
BstSCI	CCNGG	2 cut(s)	453, 541
BstUI	CGCG	2 cut(s)	311, 313
BstV1I	GCAGC	2 cut(s)	394, 397
BstV2I	GAAGAC	2 cut(s)	178, 612
BstX2I	RGATCY	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	301, 442
BtsCI	GGATG	1 cut(s)	479
BtsIMutI	CAGTG	3 cut(s)	163, 175, 270
Cac8I	GCNNGC	3 cut(s)	309, 315, 403
CfoI	GCGC	2 cut(s)	313, 407
CseI	GACGC	1 cut(s)	234
CsiI	ACCWGGT	1 cut(s)	541
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	3 cut(s)	101, 283, 610
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	3 cut(s)	85, 136, 167
DpnI	GATC	2 cut(s)	141, 654
DpnII	GATC	2 cut(s)	139, 652
EaeI	YGGCCR	1 cut(s)	440
Eco147I	AGGCCT	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	453, 541
FaeI	CATG	3 cut(s)	104, 286, 613
FalI	AAGNNNNNCTT	4 cut(s)	68, 100, 492, 524
FatI	CATG	3 cut(s)	100, 282, 609
Fnu4HI	GCNGC	2 cut(s)	408, 411
FokI	GGATG	1 cut(s)	486
Fsp4HI	GCNGC	2 cut(s)	408, 411
FspBI	CTAG	3 cut(s)	635, 650, 667
GlaI	GCGC	2 cut(s)	312, 406
GluI	GCNGC	2 cut(s)	408, 411
GsuI	CTGGAG	2 cut(s)	361, 498
HaeIII	GGCC	2 cut(s)	301, 442
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	2 cut(s)	313, 407
Hin1I	GRCGYC	1 cut(s)	226
Hin1II	CATG	3 cut(s)	104, 286, 613
Hin6I	GCGC	2 cut(s)	311, 405
HinP1I	GCGC	2 cut(s)	311, 405
HinfI	GANTC	1 cut(s)	198
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	3 cut(s)	181, 197, 571
Hpy188III	TCNNGA	4 cut(s)	143, 483, 515, 593
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	1 cut(s)	441
HpyAV	CCTTC	5 cut(s)	262, 277, 464, 494, 524
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	4 cut(s)	4, 59, 152, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 407
HpyF3I	CTNAG	3 cut(s)	85, 136, 167
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	1 cut(s)	226
Hsp92II	CATG	3 cut(s)	104, 286, 613
HspAI	GCGC	2 cut(s)	311, 405
Kzo9I	GATC	2 cut(s)	139, 652
Lsp1109I	GCAGC	2 cut(s)	394, 397
MabI	ACCWGGT	1 cut(s)	541
MaeI	CTAG	3 cut(s)	635, 650, 667
MaeII	ACGT	1 cut(s)	17
MalI	GATC	2 cut(s)	141, 654
MboI	GATC	2 cut(s)	139, 652
MboII	GAAGA	2 cut(s)	178, 617
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	4 cut(s)	212, 521, 617, 660
MlyI	GAGTC	1 cut(s)	207
MnlI	CCTC	1 cut(s)	577
MseI	TTAA	2 cut(s)	14, 524
MspR9I	CCNGG	2 cut(s)	455, 543
MvaI	CCWGG	2 cut(s)	455, 543
MvnI	CGCG	2 cut(s)	311, 313
MwoI	GCNNNNNNNGC	2 cut(s)	80, 407
NdeII	GATC	2 cut(s)	139, 652
NlaIII	CATG	3 cut(s)	104, 286, 613
NspI	RCATGY	1 cut(s)	613
PceI	AGGCCT	1 cut(s)	301
PciI	ACATGT	1 cut(s)	609
PkrI	GCNGC	2 cut(s)	409, 412
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PscI	ACATGT	1 cut(s)	609
Psp6I	CCWGG	2 cut(s)	453, 541
PspGI	CCWGG	2 cut(s)	453, 541
PsrI	GAACNNNNNNTAC	2 cut(s)	33, 65
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	14, 524
SatI	GCNGC	2 cut(s)	408, 411
Sau3AI	GATC	2 cut(s)	139, 652
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	455, 543
SetI	ASST	8 cut(s)	20, 57, 168, 359, 496, 547, 651, 668
SexAI	ACCWGGT	1 cut(s)	541
Sse9I	AATT	4 cut(s)	212, 521, 617, 660
SseBI	AGGCCT	1 cut(s)	301
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	3 cut(s)	635, 650, 667
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	453, 541
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	482, 490
TasI	AATT	4 cut(s)	212, 521, 617, 660
TatI	WGTACW	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	14, 524
Tru9I	TTAA	2 cut(s)	14, 524
TscAI	CASTG	3 cut(s)	163, 175, 277
TseI	GCWGC	2 cut(s)	407, 410
TspDTI	ATGAA	3 cut(s)	366, 534, 543
TspRI	CASTG	3 cut(s)	163, 175, 277
XapI	RAATTY	1 cut(s)	617
XceI	RCATGY	1 cut(s)	613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XspI	CTAG	3 cut(s)	635, 650, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.