Rroxscaffold_2G00106070

proline-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
29609444 .. 29613580
4137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106070.1

Sequence Viewer

Length: 1200 bp
ATGCCACCCCTCCGCCTGACTATAAGCGCCCTCCGTTCCGCCACTGTTTCTGAGGATGAATTGTATGGATCAGATAAACCGCCCCCAGCCTTTGGATTTTCCGAAAGCACATTTACATACGAAGAATTAGTCAGGGCAACAAATGGATTCTCCAACGACAATCTTCTTGGTCAAGGAGGCTTTGGTTTTGTCCATAAAGGTATTCTTCCAAATGGGAAAGTGGTTGCAATTAAACAGCTGAAAGCTGGGAGTGGACAGGGGGACCGTGAATTCCAGGCAGAGGTTGAAGTCATTAATCGTGTCCATCACAGACATCTTGTATCACTGGTTGGATACTGCATTAGTGGGGCCCAGAGATTGCTTGTTTATGAGTTCGTTTCCAACAACACCTTGGAATTTCACTTGCATGGAAAGAGGCGACCAACTATGACTTGGCCAACAAGAATGAAAATTGCTCTAGGATCTGCAAAAGGATTGGCATATCTCCATGAGGACTGTCATCCCAAGATCATACACCGTGACATCAAGGCTGCCAATATTCTTATTGATGACAACTTTGAGGCAAAGGTTGCAGACTTTGGACTCGCCAAGTTTGCCTTAGATACAGATACTCATGTCTCCACAAGGGTTATGGGAACTTTTGGATACTTAGATCCTGAATATGCATCCAGTGGAAAGCTCAGTGATAAGTCAGATGTCTTCTCATTCGGAGTCGTGCTATTGGAATTGATTACTGGACGCCAACCCATTGATAAAACTCATTCCTTCACAACTCATTCCTTCACTGATGATAGCTTGGTTGAGTGGCTTGAATGGCCCGGAAAGATTGTAGACACTGTTATTGAATTTCAGGCAAGGCCTTTGCTCGCGCGAGCATTGGAAAAGGGAAACATTGATGGTCTTGTTGATGAAAGGTTGCAGAATGTTTACAACTCCAGCGAAATGACTCGTATGATTGCCTGCGCTGCTGCTTCTGTGCGACATTCTGCCCACCGTCGGCCAAAAATGAGCCAGGTAGTTCGAGCTTTGGAAGGCAATCTTTCTCCAGATGAATTAAATGAAGGAGTTATACCAGGTCAAAGTACGATATACATTTCCGCTGAAAGCACACAATACAACACTCGTGAATACAAGGAAGACATGTTGAAATTTAGAAAGTTAGCACTAGAAAGCCAAGAGCTAGATCAAGGAACTAGCTAG

Protein Analysis

399

Amino Acids

44.38

Weight (kDa)

6.07

Isoelectric Point (pI)

30.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 51 - 259 4.7e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 53 - 261 3e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 92
AccI GTMKAC 1 cut(s) 831
AccII CGCG 2 cut(s) 869, 871
AciI CCGC 4 cut(s) 13, 39, 80, 1098
AclWI GGATC 3 cut(s) 76, 469, 647
AcoI YGGCCR 2 cut(s) 434, 998
AcsI RAATTY 4 cut(s) 269, 395, 845, 1148
AcyI GRCGYC 1 cut(s) 739
AfaI GTAC 1 cut(s) 1084
AfiI CCNNNNNNNGG 3 cut(s) 92, 280, 996
AflIII ACRYGT 1 cut(s) 1140
AgsI TTSAA 4 cut(s) 287, 812, 845, 1147
AjnI CCWGG 3 cut(s) 273, 1011, 1072
AluBI AGCT 7 cut(s) 238, 245, 679, 795, 1025, 1180, 1197
AluI AGCT 7 cut(s) 238, 245, 679, 795, 1025, 1180, 1197
Alw26I GTCTC 1 cut(s) 622
AlwI GGATC 3 cut(s) 76, 469, 647
AoxI GGCC 5 cut(s) 348, 434, 815, 857, 998
ApaI GGGCCC 1 cut(s) 352
ApeKI GCWGC 3 cut(s) 530, 965, 968
ApoI RAATTY 4 cut(s) 269, 395, 845, 1148
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AseI ATTAAT 1 cut(s) 294
AspLEI GCGC 3 cut(s) 29, 871, 965
AspS9I GGNCC 4 cut(s) 262, 348, 349, 816
AsuC2I CCSGG 1 cut(s) 819
AvaII GGWCC 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 352
BaeI ACNNNNGTAYC 2 cut(s) 600, 633
BalI TGGCCA 1 cut(s) 436
BanII GRGCYC 1 cut(s) 352
BarI GAAGNNNNNNTAC 2 cut(s) 1053, 1085
BauI CACGAG 1 cut(s) 1122
BbsI GAAGAC 2 cut(s) 691, 1143
BbvI GCAGC 3 cut(s) 517, 952, 955
BccI CCATC 2 cut(s) 312, 890
BciT130I CCWGG 3 cut(s) 275, 1013, 1074
BciVI GTATCC 2 cut(s) 326, 638
BcnI CCSGG 1 cut(s) 819
BcoDI GTCTC 1 cut(s) 622
BfaI CTAG 5 cut(s) 458, 1166, 1181, 1194, 1198
BfoI RGCGCY 1 cut(s) 30
BfuI GTATCC 2 cut(s) 326, 638
BisI GCNGC 3 cut(s) 531, 966, 969
BlsI GCNGC 3 cut(s) 532, 967, 970
Bme1390I CCNGG 4 cut(s) 275, 819, 1013, 1074
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 4 cut(s) 262, 348, 349, 816
BmiI GGNNCC 3 cut(s) 263, 349, 350
BmrFI CCNGG 4 cut(s) 275, 819, 1013, 1074
BmsI GCATC 1 cut(s) 674
BpiI GAAGAC 2 cut(s) 691, 1143
BpmI CTGGAG 2 cut(s) 919, 1029
BpuMI CCSGG 1 cut(s) 819
BsaHI GRCGYC 1 cut(s) 739
BsaJI CCNNGG 1 cut(s) 390
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 280, 996
Bse1I ACTGG 3 cut(s) 330, 669, 739
BseBI CCWGG 3 cut(s) 275, 1013, 1074
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 3 cut(s) 61, 499, 665
BseLI CCNNNNNNNGG 3 cut(s) 92, 280, 996
BseMII CTCAG 2 cut(s) 42, 694
BseNI ACTGG 3 cut(s) 330, 669, 739
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 3 cut(s) 517, 952, 955
BseYI CCCAGC 2 cut(s) 85, 245
Bsh1236I CGCG 2 cut(s) 869, 871
BshFI GGCC 5 cut(s) 350, 436, 817, 859, 1000
BsiSI CCGG 1 cut(s) 819
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 3 cut(s) 92, 280, 996
BsmAI GTCTC 1 cut(s) 622
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 5 cut(s) 350, 436, 817, 859, 1000
Bsp120I GGGCCC 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 5 cut(s) 68, 461, 507, 652, 1183
BspACI CCGC 4 cut(s) 13, 39, 80, 1098
BspANI GGCC 5 cut(s) 350, 436, 817, 859, 1000
BspCNI CTCAG 2 cut(s) 43, 693
BspFNI CGCG 2 cut(s) 869, 871
BspLI GGNNCC 3 cut(s) 263, 349, 350
BspPI GGATC 3 cut(s) 76, 469, 647
BsrI ACTGG 3 cut(s) 330, 669, 739
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 5 cut(s) 68, 461, 507, 652, 1183
BssNI GRCGYC 1 cut(s) 739
BssSI CACGAG 1 cut(s) 1122
BssT1I CCWWGG 1 cut(s) 390
Bst2BI CACGAG 1 cut(s) 1122
Bst2UI CCWGG 3 cut(s) 275, 1013, 1074
Bst4CI ACNGT 6 cut(s) 46, 266, 497, 518, 838, 995
BstACI GRCGYC 1 cut(s) 739
BstAPI GCANNNNNTGC 1 cut(s) 569
BstC8I GCNNGC 3 cut(s) 867, 873, 961
BstDEI CTNAG 4 cut(s) 51, 598, 649, 680
BstF5I GGATG 3 cut(s) 61, 499, 665
BstFNI CGCG 2 cut(s) 869, 871
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 3 cut(s) 29, 871, 965
BstKTI GATC 5 cut(s) 71, 464, 510, 655, 1186
BstMAI GTCTC 1 cut(s) 622
BstMBI GATC 5 cut(s) 68, 461, 507, 652, 1183
BstMWI GCNNNNNNNGC 4 cut(s) 569, 593, 814, 965
BstNI CCWGG 3 cut(s) 275, 1013, 1074
BstNSI RCATGY 1 cut(s) 1144
BstSCI CCNGG 4 cut(s) 273, 817, 1011, 1072
BstSLI GKGCMC 1 cut(s) 352
BstUI CGCG 2 cut(s) 869, 871
BstV1I GCAGC 3 cut(s) 517, 952, 955
BstV2I GAAGAC 2 cut(s) 691, 1143
BstX2I RGATCY 2 cut(s) 461, 652
BstYI RGATCY 2 cut(s) 461, 652
BsuI GTATCC 2 cut(s) 326, 638
BsuRI GGCC 5 cut(s) 350, 436, 817, 859, 1000
BtsCI GGATG 3 cut(s) 61, 499, 665
BtsIMutI CAGTG 6 cut(s) 42, 323, 676, 688, 783, 834
Cac8I GCNNGC 3 cut(s) 867, 873, 961
CfoI GCGC 3 cut(s) 29, 871, 965
Cfr13I GGNCC 4 cut(s) 262, 348, 349, 816
CseI GACGC 1 cut(s) 747
CsiI ACCWGGT 1 cut(s) 1072
Csp6I GTAC 1 cut(s) 1083
CviAII CATG 4 cut(s) 407, 488, 614, 1141
CviQI GTAC 1 cut(s) 1083
DdeI CTNAG 4 cut(s) 51, 598, 649, 680
DpnI GATC 5 cut(s) 70, 463, 509, 654, 1185
DpnII GATC 5 cut(s) 68, 461, 507, 652, 1183
EaeI YGGCCR 2 cut(s) 434, 998
EciI GGCGGA 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 390
Eco147I AGGCCT 1 cut(s) 859
Eco24I GRGCYC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 348
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 3 cut(s) 273, 1011, 1072
EcoT14I CCWWGG 1 cut(s) 390
EcoT22I ATGCAT 1 cut(s) 667
EcoT38I GRGCYC 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 4 cut(s) 410, 491, 617, 1144
FalI AAGNNNNNCTT 6 cut(s) 189, 221, 581, 613, 1023, 1055
FaqI GGGAC 1 cut(s) 275
FatI CATG 4 cut(s) 406, 487, 613, 1140
FblI GTMKAC 1 cut(s) 831
Fnu4HI GCNGC 3 cut(s) 531, 966, 969
FokI GGATG 3 cut(s) 68, 486, 652
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 3 cut(s) 531, 966, 969
FspBI CTAG 5 cut(s) 458, 1166, 1181, 1194, 1198
GlaI GCGC 3 cut(s) 28, 870, 964
GluI GCNGC 3 cut(s) 531, 966, 969
GsaI CCCAGC 2 cut(s) 89, 249
GsuI CTGGAG 2 cut(s) 919, 1029
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 5 cut(s) 350, 436, 817, 859, 1000
HapII CCGG 1 cut(s) 819
HgaI GACGC 1 cut(s) 747
HhaI GCGC 3 cut(s) 29, 871, 965
Hin1I GRCGYC 1 cut(s) 739
Hin1II CATG 4 cut(s) 410, 491, 617, 1144
Hin6I GCGC 3 cut(s) 27, 869, 963
HinP1I GCGC 3 cut(s) 27, 869, 963
HinfI GANTC 4 cut(s) 147, 582, 711, 946
HpaII CCGG 1 cut(s) 819
Hpy166II GTNNAC 3 cut(s) 254, 832, 928
Hpy188I TCNGA 5 cut(s) 52, 73, 103, 694, 710
Hpy188III TCNNGA 3 cut(s) 656, 1046, 1124
Hpy8I GTNNAC 3 cut(s) 254, 832, 928
Hpy99I CGWCG 1 cut(s) 999
HpyAV CCTTC 4 cut(s) 775, 790, 1025, 1055
HpyCH4III ACNGT 6 cut(s) 46, 266, 497, 518, 838, 995
HpyCH4V TGCA 7 cut(s) 227, 339, 406, 467, 572, 665, 919
HpyF10VI GCNNNNNNNGC 4 cut(s) 569, 593, 814, 965
HpyF3I CTNAG 4 cut(s) 51, 598, 649, 680
Hsp92I GRCGYC 1 cut(s) 739
Hsp92II CATG 4 cut(s) 410, 491, 617, 1144
HspAI GCGC 3 cut(s) 27, 869, 963
Kzo9I GATC 5 cut(s) 68, 461, 507, 652, 1183
Lsp1109I GCAGC 3 cut(s) 517, 952, 955
LweI GCATC 1 cut(s) 674
MabI ACCWGGT 1 cut(s) 1072
MaeI CTAG 5 cut(s) 458, 1166, 1181, 1194, 1198
MaeIII GTNAC 1 cut(s) 518
MalI GATC 5 cut(s) 70, 463, 509, 654, 1185
MboI GATC 5 cut(s) 68, 461, 507, 652, 1183
MboII GAAGA 5 cut(s) 134, 155, 197, 691, 1148
MflI RGATCY 2 cut(s) 461, 652
MhlI GDGCHC 1 cut(s) 352
MlsI TGGCCA 1 cut(s) 436
MluNI TGGCCA 1 cut(s) 436
MlyI GAGTC 3 cut(s) 576, 720, 940
MmeI TCCRAC 3 cut(s) 177, 310, 405
MnlI CCTC 8 cut(s) 20, 41, 46, 170, 274, 408, 484, 553
Mox20I TGGCCA 1 cut(s) 436
Mph1103I ATGCAT 1 cut(s) 667
MscI TGGCCA 1 cut(s) 436
MseI TTAA 3 cut(s) 231, 294, 1055
MslI CAYNNNNRTG 1 cut(s) 405
Msp20I TGGCCA 1 cut(s) 436
MspA1I CMGCKG 2 cut(s) 238, 1100
MspI CCGG 1 cut(s) 819
MspR9I CCNGG 4 cut(s) 275, 819, 1013, 1074
MvaI CCWGG 3 cut(s) 275, 1013, 1074
MvnI CGCG 2 cut(s) 869, 871
MwoI GCNNNNNNNGC 4 cut(s) 569, 593, 814, 965
NciI CCSGG 1 cut(s) 819
NdeII GATC 5 cut(s) 68, 461, 507, 652, 1183
NlaIII CATG 4 cut(s) 410, 491, 617, 1144
NlaIV GGNNCC 3 cut(s) 263, 349, 350
NmuCI GTSAC 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 1 cut(s) 1144
PceI AGGCCT 1 cut(s) 859
PciI ACATGT 1 cut(s) 1140
PfeI GAWTC 1 cut(s) 147
PflMI CCANNNNNTGG 1 cut(s) 92
PkrI GCNGC 3 cut(s) 532, 967, 970
PleI GAGTC 3 cut(s) 576, 719, 940
PpsI GAGTC 3 cut(s) 576, 719, 940
PscI ACATGT 1 cut(s) 1140
PshBI ATTAAT 1 cut(s) 294
Psp6I CCWGG 3 cut(s) 273, 1011, 1072
PspFI CCCAGC 2 cut(s) 85, 245
PspGI CCWGG 3 cut(s) 273, 1011, 1072
PspN4I GGNNCC 3 cut(s) 263, 349, 350
PspOMI GGGCCC 1 cut(s) 348
PspPI GGNCC 4 cut(s) 262, 348, 349, 816
PsuI RGATCY 2 cut(s) 461, 652
PvuII CAGCTG 1 cut(s) 238
RsaI GTAC 1 cut(s) 1084
RsaNI GTAC 1 cut(s) 1083
RseI CAYNNNNRTG 1 cut(s) 405
SaqAI TTAA 3 cut(s) 231, 294, 1055
SatI GCNGC 3 cut(s) 531, 966, 969
Sau3AI GATC 5 cut(s) 68, 461, 507, 652, 1183
Sau96I GGNCC 4 cut(s) 262, 348, 349, 816
SchI GAGTC 3 cut(s) 576, 720, 940
ScrFI CCNGG 4 cut(s) 275, 819, 1013, 1074
SduI GDGCHC 1 cut(s) 352
SexAI ACCWGGT 1 cut(s) 1072
SfaNI GCATC 1 cut(s) 674
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 405
SseBI AGGCCT 1 cut(s) 859
SsiI CCGC 4 cut(s) 13, 39, 80, 1098
SspI AATATT 1 cut(s) 538
SspMI CTAG 5 cut(s) 458, 1166, 1181, 1194, 1198
StuI AGGCCT 1 cut(s) 859
StyD4I CCNGG 4 cut(s) 273, 817, 1011, 1072
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 6 cut(s) 46, 266, 497, 518, 838, 995
TaqI TCGA 1 cut(s) 1021
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 3 cut(s) 231, 294, 1055
Tru9I TTAA 3 cut(s) 231, 294, 1055
TscAI CASTG 6 cut(s) 49, 330, 676, 688, 790, 841
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 3 cut(s) 530, 965, 968
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 5 cut(s) 72, 461, 924, 1065, 1074
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 6 cut(s) 49, 330, 676, 688, 790, 841
Van91I CCANNNNNTGG 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 262
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 4 cut(s) 269, 395, 845, 1148
XceI RCATGY 1 cut(s) 1144
XcmI CCANNNNNNNNNTGG 3 cut(s) 388, 429, 628
XmiI GTMKAC 1 cut(s) 831
XspI CTAG 5 cut(s) 458, 1166, 1181, 1194, 1198
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.