Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Forward (+)

52553564 .. 52629801

Gene Structure 76238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG386300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTCGGCGCCGGCCCCGTCCACCACCAACTCCACCTCACCTCCTCCCCCTCCGCCGGCCAACGCTACTGCTCCTACCACTACTCCGCCGCCAACCAACTCCACCGCGTCGCCGCCAACCAACTCCACCACATCGCCGCCACCCCCGGCGTCCACATCTAATACGCCGCCCATAGGGCAGTTGCCGTCGGGGAACACGCCGGTCGGGGTTATAGTCGGAGTTGCGATAGGAGGGTTCAGCGTACTTGTTGTAGTGGCCATTATCTTCTTTGTCTATCGGAGACGGAAGAACAGGTTGGCGAGAGCTAATGAGTCAGGTCAACAACCCAAAGATGACCAATTAAAAGGCCCACCTCAAAACTTGCAACAGAACTATGCTCCTCCTTCAGCAGACAAAGTAGAAATGTTTCCAATGCCTACTCATTCCCGTAAACCATCTTCAACCGGTAGCGGCTATGGATCAGATAAACCGCCCCCAGCCTTTGGATTTTCTGAAAGCACATTTACATATGAAGAGTTAGACATGGCAACAAATGGTTTCTCCAACGACAATCTTCTTGGTCAAGGAGGCTTTGGTTATGTCCATAAAGGAATTCTTCCAAATGGGAAAGTGGTTGCAATTAAACAGCTGAAAGCTGGGAGTGGACAGGGGGAGCGTGAATTCCAGGCAGAAGTTGAAGTCATTAATCGTGTCCATCACAGACATCTTGTATCACTGGTTGGATACTGCATTAGTGGGGCCCAGAGATTGCTTGTTTATGAGTTCGTTTCCAACAGCACCTTGGAATTTCACTTGCATGGAAAGAGGCGACCAACTATGACTTGGCCAACAAGAATGAAAATTGCTCTAGGATCTGCAAAAGGATTGGCATATCTCCATGAGGACTGTAAGTTCTCTTTGAATGCTACCTTTTTTTATTTTGGGAACTACATACAAATTTTCTGGGCTGTTATTTTCCTTGCAAGTAATTGCCTACTCTTGAGCGATATCTTCAGGTCATCCCAAGATCATACACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

339

Amino Acids

36.53

Weight (kDa)

9.3

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	181 - 295	2.9e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	183 - 294	9.1e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccB7I	CCANNNNNTGG	1 cut(s)	482
AccII	CGCG	1 cut(s)	107
AciI	CCGC	9 cut(s)	53, 86, 89, 105, 113, 137, 167, 450, 470
AclWI	GGATC	2 cut(s)	466, 859
AcoI	YGGCCR	3 cut(s)	57, 255, 824
AcsI	RAATTY	4 cut(s)	591, 659, 785, 936
AcuI	CTGAAG	2 cut(s)	369, 976
AcyI	GRCGYC	2 cut(s)	8, 149
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	3 cut(s)	55, 173, 482
AgeI	ACCGGT	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	441, 677, 901
AjnI	CCWGG	1 cut(s)	663
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AloI	GAACNNNNNNTCC	2 cut(s)	875, 907
AluBI	AGCT	3 cut(s)	305, 628, 635
AluI	AGCT	3 cut(s)	305, 628, 635
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	2 cut(s)	466, 859
AoxI	GGCC	6 cut(s)	12, 57, 255, 346, 738, 824
ApaI	GGGCCC	1 cut(s)	742
ApoI	RAATTY	4 cut(s)	591, 659, 785, 936
AseI	ATTAAT	1 cut(s)	684
AsiGI	ACCGGT	1 cut(s)	443
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	4 cut(s)	13, 347, 738, 739
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	30
BaeGI	GKGCMC	1 cut(s)	742
BalI	TGGCCA	2 cut(s)	257, 826
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	742
BarI	GAAGNNNNNNTAC	2 cut(s)	421, 453
BccI	CCATC	2 cut(s)	442, 702
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	665
BciVI	GTATCC	1 cut(s)	716
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	848
BfoI	RGCGCY	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	716
BglI	GCCNNNNNGGC	1 cut(s)	175
BisI	GCNGC	5 cut(s)	89, 113, 137, 167, 451
BlsI	GCNGC	5 cut(s)	90, 114, 138, 168, 452
Bme1390I	CCNGG	2 cut(s)	146, 665
BmgT120I	GGNCC	4 cut(s)	13, 347, 738, 739
BmiI	GGNNCC	4 cut(s)	9, 15, 739, 740
BmrFI	CCNGG	2 cut(s)	146, 665
BpuEI	CTTGAG	1 cut(s)	1000
BpuMI	CCSGG	1 cut(s)	146
BsaHI	GRCGYC	2 cut(s)	8, 149
BsaJI	CCNNGG	2 cut(s)	144, 780
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 67, 97
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 173, 482
Bse118I	RCCGGY	4 cut(s)	10, 55, 199, 443
Bse1I	ACTGG	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	665
BseDI	CCNNGG	2 cut(s)	144, 780
BseGI	GGATG	1 cut(s)	998
BseLI	CCNNNNNNNGG	3 cut(s)	55, 173, 482
BseNI	ACTGG	1 cut(s)	720
BseRI	GAGGAG	2 cut(s)	33, 369
BseSI	GKGCMC	1 cut(s)	742
BseYI	CCCAGC	2 cut(s)	475, 635
Bsh1236I	CGCG	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	6 cut(s)	14, 59, 257, 348, 740, 826
BshNI	GGYRCC	1 cut(s)	7
BshTI	ACCGGT	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	5 cut(s)	11, 56, 146, 200, 444
BslI	CCNNNNNNNGG	3 cut(s)	55, 173, 482
BsmAI	GTCTC	1 cut(s)	274
BsmBI	CGTCTC	1 cut(s)	274
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	6 cut(s)	14, 59, 257, 348, 740, 826
Bsp120I	GGGCCC	1 cut(s)	738
Bsp1286I	GDGCHC	1 cut(s)	742
Bsp143I	GATC	3 cut(s)	458, 851, 1006
BspACI	CCGC	9 cut(s)	53, 86, 89, 105, 113, 137, 167, 450, 470
BspANI	GGCC	6 cut(s)	14, 59, 257, 348, 740, 826
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	4 cut(s)	9, 15, 739, 740
BspPI	GGATC	2 cut(s)	466, 859
BspT107I	GGYRCC	1 cut(s)	7
BsrFI	RCCGGY	4 cut(s)	10, 55, 199, 443
BsrI	ACTGG	1 cut(s)	720
BssAI	RCCGGY	4 cut(s)	10, 55, 199, 443
BssECI	CCNNGG	2 cut(s)	144, 780
BssMI	GATC	3 cut(s)	458, 851, 1006
BssNI	GRCGYC	2 cut(s)	8, 149
BssT1I	CCWWGG	1 cut(s)	780
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	2 cut(s)	887, 1017
Bst6I	CTCTTC	1 cut(s)	507
BstACI	GRCGYC	2 cut(s)	8, 149
BstC8I	GCNNGC	2 cut(s)	12, 57
BstF5I	GGATG	1 cut(s)	998
BstFNI	CGCG	1 cut(s)	107
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	3 cut(s)	461, 854, 1009
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	3 cut(s)	458, 851, 1006
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	665
BstSCI	CCNGG	2 cut(s)	144, 663
BstSLI	GKGCMC	1 cut(s)	742
BstUI	CGCG	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	851
BstYI	RGATCY	1 cut(s)	851
BsuI	GTATCC	1 cut(s)	716
BsuRI	GGCC	6 cut(s)	14, 59, 257, 348, 740, 826
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	998
BtsIMutI	CAGTG	1 cut(s)	713
Cac8I	GCNNGC	2 cut(s)	12, 57
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	4 cut(s)	10, 55, 199, 443
Cfr13I	GGNCC	4 cut(s)	13, 347, 738, 739
CseI	GACGC	2 cut(s)	96, 138
Csp6I	GTAC	1 cut(s)	242
CspAI	ACCGGT	1 cut(s)	443
CviAII	CATG	3 cut(s)	523, 797, 878
CviQI	GTAC	1 cut(s)	242
DinI	GGCGCC	1 cut(s)	9
DpnI	GATC	3 cut(s)	460, 853, 1008
DpnII	GATC	3 cut(s)	458, 851, 1006
EaeI	YGGCCR	3 cut(s)	57, 255, 824
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
EciI	GGCGGA	2 cut(s)	42, 75
Eco130I	CCWWGG	1 cut(s)	780
Eco24I	GRGCYC	1 cut(s)	742
Eco32I	GATATC	1 cut(s)	988
Eco57I	CTGAAG	2 cut(s)	369, 976
EcoO109I	RGGNCCY	1 cut(s)	738
EcoRI	GAATTC	2 cut(s)	591, 659
EcoRII	CCWGG	1 cut(s)	663
EcoRV	GATATC	1 cut(s)	988
EcoT14I	CCWWGG	1 cut(s)	780
EcoT38I	GRGCYC	1 cut(s)	742
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	780
Esp3I	CGTCTC	1 cut(s)	274
FaeI	CATG	3 cut(s)	526, 800, 881
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	3 cut(s)	522, 796, 877
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	5 cut(s)	89, 113, 137, 167, 451
FokI	GGATG	1 cut(s)	985
FriOI	GRGCYC	1 cut(s)	742
Fsp4HI	GCNGC	5 cut(s)	89, 113, 137, 167, 451
FspBI	CTAG	1 cut(s)	848
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	5 cut(s)	89, 113, 137, 167, 451
GsaI	CCCAGC	2 cut(s)	479, 639
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	6 cut(s)	14, 59, 257, 348, 740, 826
HapII	CCGG	5 cut(s)	11, 56, 146, 200, 444
HgaI	GACGC	2 cut(s)	96, 138
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	2 cut(s)	8, 149
Hin1II	CATG	3 cut(s)	526, 800, 881
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	320
HindII	GTYRAC	1 cut(s)	320
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	5 cut(s)	11, 56, 146, 200, 444
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	5 cut(s)	21, 153, 320, 431, 644
Hpy188I	TCNGA	4 cut(s)	218, 279, 463, 493
Hpy188III	TCNNGA	1 cut(s)	979
Hpy8I	GTNNAC	5 cut(s)	21, 153, 320, 431, 644
Hpy99I	CGWCG	2 cut(s)	112, 190
HpyAV	CCTTC	1 cut(s)	393
HpyCH4III	ACNGT	2 cut(s)	887, 1017
HpyCH4V	TGCA	6 cut(s)	364, 617, 729, 796, 857, 962
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
Hsp92I	GRCGYC	2 cut(s)	8, 149
Hsp92II	CATG	3 cut(s)	526, 800, 881
HspAI	GCGC	1 cut(s)	8
KasI	GGCGCC	1 cut(s)	7
KroI	GCCGGC	2 cut(s)	10, 55
KroNI	GCCGGC	2 cut(s)	12, 57
Kzo9I	GATC	3 cut(s)	458, 851, 1006
LmnI	GCTCC	3 cut(s)	76, 382, 652
MaeI	CTAG	1 cut(s)	848
MalI	GATC	3 cut(s)	460, 853, 1008
MboI	GATC	3 cut(s)	458, 851, 1006
MboII	GAAGA	7 cut(s)	256, 298, 429, 524, 545, 587, 982
MflI	RGATCY	1 cut(s)	851
MhlI	GDGCHC	1 cut(s)	742
MlsI	TGGCCA	2 cut(s)	257, 826
MluCI	AATT	8 cut(s)	338, 591, 618, 659, 785, 840, 936, 967
MluNI	TGGCCA	2 cut(s)	257, 826
Mly113I	GGCGCC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	4 cut(s)	196, 567, 700, 795
Mox20I	TGGCCA	2 cut(s)	257, 826
MroNI	GCCGGC	2 cut(s)	10, 55
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	2 cut(s)	257, 826
MseI	TTAA	3 cut(s)	341, 621, 684
MslI	CAYNNNNRTG	1 cut(s)	795
Msp20I	TGGCCA	2 cut(s)	257, 826
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	5 cut(s)	11, 56, 146, 200, 444
MspR9I	CCNGG	2 cut(s)	146, 665
Mva1269I	GAATGC	1 cut(s)	907
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	175
NaeI	GCCGGC	2 cut(s)	12, 57
NarI	GGCGCC	1 cut(s)	8
NciI	CCSGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	3 cut(s)	458, 851, 1006
NgoMIV	GCCGGC	2 cut(s)	10, 55
NlaIII	CATG	3 cut(s)	526, 800, 881
NlaIV	GGNNCC	4 cut(s)	9, 15, 739, 740
PctI	GAATGC	1 cut(s)	907
PdiI	GCCGGC	2 cut(s)	12, 57
PdmI	GAANNNNTTC	1 cut(s)	405
PflMI	CCANNNNNTGG	1 cut(s)	482
PinAI	ACCGGT	1 cut(s)	443
PkrI	GCNGC	5 cut(s)	90, 114, 138, 168, 452
PleI	GAGTC	1 cut(s)	319
PluTI	GGCGCC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	319
PshBI	ATTAAT	1 cut(s)	684
Psp6I	CCWGG	1 cut(s)	663
PspFI	CCCAGC	2 cut(s)	475, 635
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	4 cut(s)	9, 15, 739, 740
PspOMI	GGGCCC	1 cut(s)	738
PspPI	GGNCC	4 cut(s)	13, 347, 738, 739
PsuI	RGATCY	1 cut(s)	851
PvuII	CAGCTG	1 cut(s)	628
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	795
SaqAI	TTAA	3 cut(s)	341, 621, 684
SatI	GCNGC	5 cut(s)	89, 113, 137, 167, 451
Sau3AI	GATC	3 cut(s)	458, 851, 1006
Sau96I	GGNCC	4 cut(s)	13, 347, 738, 739
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	146, 665
SduI	GDGCHC	1 cut(s)	742
SfoI	GGCGCC	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	795
SmlI	CTYRAG	1 cut(s)	979
SmoI	CTYRAG	1 cut(s)	979
Sse9I	AATT	8 cut(s)	338, 591, 618, 659, 785, 840, 936, 967
SsiI	CCGC	9 cut(s)	53, 86, 89, 105, 113, 137, 167, 450, 470
SspDI	GGCGCC	1 cut(s)	7
SspMI	CTAG	1 cut(s)	848
StyD4I	CCNGG	2 cut(s)	144, 663
StyI	CCWWGG	1 cut(s)	780
TaaI	ACNGT	2 cut(s)	887, 1017
TasI	AATT	8 cut(s)	338, 591, 618, 659, 785, 840, 936, 967
TauI	GCSGC	5 cut(s)	91, 115, 139, 169, 453
Tru1I	TTAA	3 cut(s)	341, 621, 684
Tru9I	TTAA	3 cut(s)	341, 621, 684
TscAI	CASTG	1 cut(s)	720
TspDTI	ATGAA	2 cut(s)	525, 851
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	720
Van91I	CCANNNNNTGG	1 cut(s)	482
VspI	ATTAAT	1 cut(s)	684
XapI	RAATTY	4 cut(s)	591, 659, 785, 936
XcmI	CCANNNNNNNNNTGG	2 cut(s)	778, 819
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.