Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Forward (+)

59841041 .. 59848539

Gene Structure 7499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG400800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCCTTCTTTCGTCAAATCTTGCTATGTGCTTTCATGGAGAATTCTCTGCTCTGCTCTCTCCCTGGGAAACTTTTTGTAACTATGAAGCTTGAATGGCCCGGAAAGATTATAGATACTGTTATTGAATTTCAGGCAAGGCCTTTGCTCGCGCAAGCATTGGAAAAGGGAAACTTTGATGGTCTTGTTGATGAAAGGTTGCAGAATGATTACAACTCCAGCGAAATGGCTCGTATGATTGCCTGCGCTGCTGCTTCTGTGCATCATTCTGCCCGCCGTCGGCCAAAAATGAGCCAGTCGAGACCAACTGACAATAGGCCTAGGATCAAACCACCAATCCCTGGTAGGTTCATCTCTTGGTTTTATGGTTGGCTTTTACTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

128

Amino Acids

14.71

Weight (kDa)

9.45

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccII	CGCG	1 cut(s)	152
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	281
AcsI	RAATTY	2 cut(s)	43, 128
AfiI	CCNNNNNNNGG	2 cut(s)	279, 341
AgsI	TTSAA	3 cut(s)	95, 128, 383
AjnI	CCWGG	2 cut(s)	64, 340
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	5 cut(s)	3, 98, 140, 281, 317
ApeKI	GCWGC	2 cut(s)	248, 251
ApoI	RAATTY	2 cut(s)	43, 128
AspA2I	CCTAGG	1 cut(s)	320
AspLEI	GCGC	2 cut(s)	154, 248
AspS9I	GGNCC	1 cut(s)	99
AsuC2I	CCSGG	1 cut(s)	102
AvrII	CCTAGG	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	235, 238
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	2 cut(s)	66, 342
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	1 cut(s)	321
BisI	GCNGC	2 cut(s)	249, 252
BlnI	CCTAGG	1 cut(s)	320
BlsI	GCNGC	2 cut(s)	250, 253
Bme1390I	CCNGG	3 cut(s)	66, 102, 342
BmgT120I	GGNCC	1 cut(s)	99
BmrFI	CCNGG	3 cut(s)	66, 102, 342
BmsI	GCATC	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	4 cut(s)	64, 65, 320, 340
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 341
Bse1I	ACTGG	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	66, 342
BseDI	CCNNGG	4 cut(s)	64, 65, 320, 340
BseLI	CCNNNNNNNGG	2 cut(s)	279, 341
BseNI	ACTGG	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	235, 238
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	5 cut(s)	5, 100, 142, 283, 319
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	2 cut(s)	279, 341
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	5 cut(s)	5, 100, 142, 283, 319
Bso31I	GGTCTC	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	324
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	5 cut(s)	5, 100, 142, 283, 319
BspFNI	CGCG	1 cut(s)	152
BspPI	GGATC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	4 cut(s)	64, 65, 320, 340
BssMI	GATC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	2 cut(s)	66, 342
Bst4CI	ACNGT	1 cut(s)	121
BstC8I	GCNNGC	4 cut(s)	150, 156, 244, 274
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	154, 248
BstKTI	GATC	1 cut(s)	327
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 248
BstNI	CCWGG	2 cut(s)	66, 342
BstSCI	CCNGG	3 cut(s)	64, 100, 340
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	235, 238
BstXI	CCANNNNNNTGG	1 cut(s)	226
BsuRI	GGCC	5 cut(s)	5, 100, 142, 283, 319
Cac8I	GCNNGC	4 cut(s)	150, 156, 244, 274
CfoI	GCGC	2 cut(s)	154, 248
Cfr13I	GGNCC	1 cut(s)	99
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	9 cut(s)	5, 91, 100, 142, 230, 283, 294, 319, 373
CviKI_1	RGCY	9 cut(s)	5, 91, 100, 142, 230, 283, 294, 319, 373
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	320
Eco147I	AGGCCT	2 cut(s)	142, 319
Eco31I	GGTCTC	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	64, 340
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	1 cut(s)	40
FaiI	YATR	6 cut(s)	28, 38, 86, 113, 236, 366
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FatI	CATG	1 cut(s)	36
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	2 cut(s)	249, 252
Fsp4HI	GCNGC	2 cut(s)	249, 252
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	2 cut(s)	153, 247
GluI	GCNGC	2 cut(s)	249, 252
GsuI	CTGGAG	1 cut(s)	202
HaeIII	GGCC	5 cut(s)	5, 100, 142, 283, 319
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	2 cut(s)	154, 248
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	2 cut(s)	152, 246
HinP1I	GCGC	2 cut(s)	152, 246
HindIII	AAGCTT	1 cut(s)	89
HpaII	CCGG	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	300
Hpy99I	CGWCG	1 cut(s)	282
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	2 cut(s)	202, 262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 248
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	2 cut(s)	152, 246
Kzo9I	GATC	1 cut(s)	324
LpnPI	CCDG	9 cut(s)	51, 78, 115, 119, 232, 256, 308, 327, 354
Lsp1109I	GCAGC	2 cut(s)	235, 238
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MluCI	AATT	2 cut(s)	43, 128
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	3 cut(s)	66, 102, 342
MvaI	CCWGG	2 cut(s)	66, 342
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	97, 248
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	1 cut(s)	40
PasI	CCCWGGG	1 cut(s)	65
PceI	AGGCCT	2 cut(s)	142, 319
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	250, 253
Psp6I	CCWGG	2 cut(s)	64, 340
PspGI	CCWGG	2 cut(s)	64, 340
PspPI	GGNCC	1 cut(s)	99
SatI	GCNGC	2 cut(s)	249, 252
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	1 cut(s)	99
ScrFI	CCNGG	3 cut(s)	66, 102, 342
SetI	ASST	3 cut(s)	93, 200, 350
SfaNI	GCATC	1 cut(s)	271
Sse9I	AATT	2 cut(s)	43, 128
SseBI	AGGCCT	2 cut(s)	142, 319
SsiI	CCGC	1 cut(s)	274
SspMI	CTAG	1 cut(s)	321
StuI	AGGCCT	2 cut(s)	142, 319
StyD4I	CCNGG	3 cut(s)	64, 100, 340
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	299
TasI	AATT	2 cut(s)	43, 128
TseI	GCWGC	2 cut(s)	248, 251
TspDTI	ATGAA	4 cut(s)	25, 101, 207, 340
Van91I	CCANNNNNTGG	1 cut(s)	341
XapI	RAATTY	2 cut(s)	43, 128
XmaJI	CCTAGG	1 cut(s)	320
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.