Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Reverse (-)

11347833 .. 11349401

Gene Structure 1569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGGAACTTTTGGTTACTTAGCTCCTGAATACGCATCTAGTGGAAAGCTCACTGAGAAGTCAGATGTATTTTCGTTTGGGGTTGTGCTGTTGGAGTTGATAACTGGACGCCAACCCATCGATAAAACTCAGACCTTCACTGATGATAGCATGGTTGAGTGGGCGAGGCCTTTGCTTGCGCAAGCATTGGAAACAGGCAACTTTGATGCTCTCGTTGACGTAAGGTTGCAGAATGACTACAACACAAGTGAAATGGCCTGTATGCTTGCTTGCGCTGCTGCTTGCGTGCGTCATTCTGCCCGACGTCGGCCGCGAATGAGCCAGGTGGTTCGAGCCTTGGAAGGAAATCTTTCTGCAGATGAGTTAAATGAGGGAATCATACCGGGTCAAAGTACGGTATTCAGTTACGGAAGCTCAGAGTACAAAGCTAGTGAGTACAAGGAAGACTTGAATAAATTCAGAAAACTAGCACTAGCACTAGAAAGCCAAGAGCAAGAGACCAGTGAGAACAGTGGACCTAGCAGTGACTTTGGCCTGCTCTCAAGTGGTGAAGGCCAACAAACCACCCAAGAGATCGAACTCGGGAAAACAAAGAAAAACACCCAAGATCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

206

Amino Acids

22.54

Weight (kDa)

4.68

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	307
Acc16I	TGCGCA	1 cut(s)	180
AccII	CGCG	1 cut(s)	313
AciI	CCGC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	308
AcsI	RAATTY	1 cut(s)	455
AcyI	GRCGYC	2 cut(s)	109, 304
AfaI	GTAC	3 cut(s)	394, 422, 437
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	4 cut(s)	23, 49, 414, 428
AluI	AGCT	4 cut(s)	23, 49, 414, 428
Alw26I	GTCTC	1 cut(s)	491
Ama87I	CYCGRG	1 cut(s)	581
AoxI	GGCC	5 cut(s)	167, 255, 308, 532, 553
ApeKI	GCWGC	2 cut(s)	275, 278
ApoI	RAATTY	1 cut(s)	455
Asp700I	GAANNNNTTC	2 cut(s)	349, 455
AspLEI	GCGC	2 cut(s)	181, 275
AspS9I	GGNCC	1 cut(s)	515
AsuC2I	CCSGG	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	262, 265
BccI	CCATC	1 cut(s)	125
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BciT130I	CCWGG	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	6 cut(s)	39, 429, 467, 473, 479, 519
BfmI	CTRYAG	1 cut(s)	354
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	3 cut(s)	276, 279, 311
BlsI	GCNGC	3 cut(s)	277, 280, 312
Bme1390I	CCNGG	2 cut(s)	323, 384
Bme18I	GGWCC	1 cut(s)	515
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	515
BmrFI	CCNGG	2 cut(s)	323, 384
BmsI	GCATC	2 cut(s)	44, 196
BpiI	GAAGAC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	384
Bsa29I	ATCGAT	1 cut(s)	120
BsaHI	GRCGYC	2 cut(s)	109, 304
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	2 cut(s)	109, 501
BseBI	CCWGG	1 cut(s)	323
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMII	CTCAG	3 cut(s)	45, 143, 429
BseNI	ACTGG	2 cut(s)	109, 501
BseX3I	CGGCCG	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	262, 265
Bsh1236I	CGCG	1 cut(s)	313
Bsh1285I	CGRYCG	1 cut(s)	311
BshFI	GGCC	5 cut(s)	169, 257, 310, 534, 555
BshVI	ATCGAT	1 cut(s)	120
BsiEI	CGRYCG	1 cut(s)	311
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	491
BsnI	GGCC	5 cut(s)	169, 257, 310, 534, 555
Bso31I	GGTCTC	1 cut(s)	491
BsoBI	CYCGRG	1 cut(s)	581
Bsp143I	GATC	2 cut(s)	573, 607
BspACI	CCGC	1 cut(s)	311
BspANI	GGCC	5 cut(s)	169, 257, 310, 534, 555
BspCNI	CTCAG	3 cut(s)	46, 142, 428
BspDI	ATCGAT	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	313
BspMAI	CTGCAG	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	109, 501
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	2 cut(s)	573, 607
BssNI	GRCGYC	2 cut(s)	109, 304
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	397, 512
BstACI	GRCGYC	2 cut(s)	109, 304
BstC8I	GCNNGC	7 cut(s)	177, 183, 267, 271, 283, 287, 536
BstDEI	CTNAG	4 cut(s)	19, 54, 129, 415
BstFNI	CGCG	1 cut(s)	313
BstHHI	GCGC	2 cut(s)	181, 275
BstKTI	GATC	2 cut(s)	576, 610
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	2 cut(s)	573, 607
BstMCI	CGRYCG	1 cut(s)	311
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	321, 382
BstSFI	CTRYAG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	313
BstV1I	GCAGC	2 cut(s)	262, 265
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BstZI	CGGCCG	1 cut(s)	308
Bsu15I	ATCGAT	1 cut(s)	120
BsuRI	GGCC	5 cut(s)	169, 257, 310, 534, 555
BsuTUI	ATCGAT	1 cut(s)	120
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	5 cut(s)	51, 138, 508, 517, 529
Cac8I	GCNNGC	7 cut(s)	177, 183, 267, 271, 283, 287, 536
CfoI	GCGC	2 cut(s)	181, 275
Cfr13I	GGNCC	1 cut(s)	515
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	2 cut(s)	117, 278
Csp6I	GTAC	3 cut(s)	393, 421, 436
CviAII	CATG	1 cut(s)	151
CviQI	GTAC	3 cut(s)	393, 421, 436
DdeI	CTNAG	4 cut(s)	19, 54, 129, 415
DpnI	GATC	2 cut(s)	575, 609
DpnII	GATC	2 cut(s)	573, 607
EaeI	YGGCCR	1 cut(s)	308
EagI	CGGCCG	1 cut(s)	308
EclXI	CGGCCG	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	336
Eco147I	AGGCCT	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	515
Eco52I	CGGCCG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	1 cut(s)	154
FaiI	YATR	3 cut(s)	152, 263, 380
FalI	AAGNNNNNCTT	4 cut(s)	333, 365, 431, 463
FatI	CATG	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	276, 279, 311
Fsp4HI	GCNGC	3 cut(s)	276, 279, 311
FspBI	CTAG	6 cut(s)	39, 429, 467, 473, 479, 519
FspI	TGCGCA	1 cut(s)	180
GlaI	GCGC	2 cut(s)	180, 274
GluI	GCNGC	3 cut(s)	276, 279, 311
HaeIII	GGCC	5 cut(s)	169, 257, 310, 534, 555
HapII	CCGG	1 cut(s)	383
HgaI	GACGC	2 cut(s)	117, 278
HhaI	GCGC	2 cut(s)	181, 275
Hin1I	GRCGYC	2 cut(s)	109, 304
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	2 cut(s)	179, 273
HinP1I	GCGC	2 cut(s)	179, 273
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	375
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	2 cut(s)	217, 515
Hpy188I	TCNGA	4 cut(s)	64, 132, 418, 461
Hpy188III	TCNNGA	3 cut(s)	26, 583, 611
Hpy8I	GTNNAC	2 cut(s)	217, 515
Hpy99I	CGWCG	2 cut(s)	306, 309
HpyAV	CCTTC	3 cut(s)	145, 335, 545
HpyCH4III	ACNGT	2 cut(s)	397, 512
HpyCH4IV	ACGT	2 cut(s)	219, 304
HpyCH4V	TGCA	2 cut(s)	229, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	4 cut(s)	19, 54, 129, 415
HpySE526I	ACGT	2 cut(s)	219, 304
Hsp92I	GRCGYC	2 cut(s)	109, 304
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	2 cut(s)	179, 273
Kzo9I	GATC	2 cut(s)	573, 607
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	9 cut(s)	39, 90, 180, 271, 308, 335, 396, 514, 548
Lsp1109I	GCAGC	2 cut(s)	262, 265
LweI	GCATC	2 cut(s)	44, 196
MaeI	CTAG	6 cut(s)	39, 429, 467, 473, 479, 519
MaeII	ACGT	2 cut(s)	219, 304
MaeIII	GTNAC	3 cut(s)	14, 404, 524
MalI	GATC	2 cut(s)	575, 609
MboI	GATC	2 cut(s)	573, 607
MboII	GAAGA	1 cut(s)	455
MflI	RGATCY	1 cut(s)	607
MluCI	AATT	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	2 cut(s)	159, 364
MroXI	GAANNNNTTC	2 cut(s)	349, 455
MseI	TTAA	1 cut(s)	365
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	2 cut(s)	323, 384
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	384
NdeII	GATC	2 cut(s)	573, 607
NlaIII	CATG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	524
NsbI	TGCGCA	1 cut(s)	180
PceI	AGGCCT	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PdmI	GAANNNNTTC	2 cut(s)	349, 455
PfeI	GAWTC	1 cut(s)	375
PkrI	GCNGC	3 cut(s)	277, 280, 312
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	515
PstI	CTGCAG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	3 cut(s)	394, 422, 437
RsaNI	GTAC	3 cut(s)	393, 421, 436
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	3 cut(s)	276, 279, 311
Sau3AI	GATC	2 cut(s)	573, 607
Sau96I	GGNCC	1 cut(s)	515
ScrFI	CCNGG	2 cut(s)	323, 384
SfaNI	GCATC	2 cut(s)	44, 196
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	1 cut(s)	515
SmlI	CTYRAG	2 cut(s)	541, 611
SmoI	CTYRAG	2 cut(s)	541, 611
Sse9I	AATT	1 cut(s)	455
SseBI	AGGCCT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	311
SspMI	CTAG	6 cut(s)	39, 429, 467, 473, 479, 519
StuI	AGGCCT	1 cut(s)	169
StyD4I	CCNGG	2 cut(s)	321, 382
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	397, 512
TaiI	ACGT	2 cut(s)	222, 307
TaqI	TCGA	3 cut(s)	120, 331, 576
TasI	AATT	1 cut(s)	455
TatI	WGTACW	2 cut(s)	420, 435
TauI	GCSGC	1 cut(s)	313
TfiI	GAWTC	1 cut(s)	375
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	5 cut(s)	58, 145, 508, 517, 529
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	2 cut(s)	275, 278
Tsp45I	GTSAC	1 cut(s)	524
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	5 cut(s)	58, 145, 508, 517, 529
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	455
XmnI	GAANNNNTTC	2 cut(s)	349, 455
XspI	CTAG	6 cut(s)	39, 429, 467, 473, 479, 519
ZraI	GACGTC	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.