Rh2DG420600

proline-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
60996107 .. 61008879
12773 bp
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UTR
Exon/CDS
Intron
Rh2DG420600.1

Sequence Viewer

Length: 420 bp
ATGAGTCAGGTCAACAACCCAAAGGTTGCAGACTTTGGACTTGCCAAGTTGGCCTTAGATACAGATACTCATGTCTCCACAAGGGTAATGGGAACTTTTGGATACTTAGCTCCTGAATATGCATCCAGTGGAAAGCTCAGTGATAAGTCAGATGTCTTCTCATTCGGGGTCGTGCTATTGGAATTGATTACTGGACGCCAACCCATTGATAAAACTCATTCCTTCACTGATGATAGCATGGTTGAGTGGGCAAGGCCTTTGCTCGCGCGAGCATTGGAAAAGGGAAACTTTGATGGTCTTGTTGATGAAAGGTTGCAGAATGATTACAACTCCAGCGAAATGGCTTGTATGATTGCCTGCGCTGCTGCTTCTGTGCGTCATTCTGCTCGCCGTCGGCCAAAAATGAGCCAGGTGGAGTAA

Protein Analysis

139

Amino Acids

15.3

Weight (kDa)

5.91

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 5 - 75 3.1e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 74 1.9e-13 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 266, 268
AcoI YGGCCR 1 cut(s) 395
AcyI GRCGYC 1 cut(s) 196
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 2 cut(s) 110, 136
AluI AGCT 2 cut(s) 110, 136
Alw26I GTCTC 1 cut(s) 79
AoxI GGCC 3 cut(s) 51, 254, 395
ApeKI GCWGC 2 cut(s) 362, 365
AspLEI GCGC 2 cut(s) 268, 362
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 349, 352
BccI CCATC 1 cut(s) 287
BceAI ACGGC 1 cut(s) 375
BciT130I CCWGG 1 cut(s) 410
BciVI GTATCC 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 79
BfuI GTATCC 1 cut(s) 95
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 2 cut(s) 363, 366
BlsI GCNGC 2 cut(s) 364, 367
Bme1390I CCNGG 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 316
BsaHI GRCGYC 1 cut(s) 196
Bse1I ACTGG 2 cut(s) 126, 196
BseBI CCWGG 1 cut(s) 410
BseGI GGATG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 151
BseNI ACTGG 2 cut(s) 126, 196
BseXI GCAGC 2 cut(s) 349, 352
Bsh1236I CGCG 2 cut(s) 266, 268
BshFI GGCC 3 cut(s) 53, 256, 397
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 3 cut(s) 53, 256, 397
BspANI GGCC 3 cut(s) 53, 256, 397
BspCNI CTCAG 1 cut(s) 150
BspFNI CGCG 2 cut(s) 266, 268
BsrI ACTGG 2 cut(s) 126, 196
BssNI GRCGYC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 196
BstC8I GCNNGC 4 cut(s) 264, 270, 358, 388
BstDEI CTNAG 3 cut(s) 55, 106, 137
BstF5I GGATG 1 cut(s) 122
BstFNI CGCG 2 cut(s) 266, 268
BstHHI GCGC 2 cut(s) 268, 362
BstMAI GTCTC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 50, 362
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 408
BstUI CGCG 2 cut(s) 266, 268
BstV1I GCAGC 2 cut(s) 349, 352
BstV2I GAAGAC 1 cut(s) 148
BstXI CCANNNNNNTGG 1 cut(s) 340
BsuI GTATCC 1 cut(s) 95
BsuRI GGCC 3 cut(s) 53, 256, 397
BtsCI GGATG 1 cut(s) 122
BtsIMutI CAGTG 3 cut(s) 133, 145, 225
Cac8I GCNNGC 4 cut(s) 264, 270, 358, 388
CfoI GCGC 2 cut(s) 268, 362
CseI GACGC 2 cut(s) 204, 365
CviAII CATG 2 cut(s) 71, 238
CviJI RGCY 7 cut(s) 53, 110, 136, 256, 344, 397, 408
CviKI_1 RGCY 7 cut(s) 53, 110, 136, 256, 344, 397, 408
DdeI CTNAG 3 cut(s) 55, 106, 137
EaeI YGGCCR 1 cut(s) 395
Eco147I AGGCCT 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 124
FaeI CATG 2 cut(s) 74, 241
FaiI YATR 4 cut(s) 72, 120, 239, 350
FalI AAGNNNNNCTT 4 cut(s) 38, 70, 272, 304
FatI CATG 2 cut(s) 70, 237
Fnu4HI GCNGC 2 cut(s) 363, 366
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 2 cut(s) 363, 366
GlaI GCGC 2 cut(s) 267, 361
GluI GCNGC 2 cut(s) 363, 366
GsuI CTGGAG 1 cut(s) 316
HaeIII GGCC 3 cut(s) 53, 256, 397
HgaI GACGC 2 cut(s) 204, 365
HhaI GCGC 2 cut(s) 268, 362
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 2 cut(s) 74, 241
Hin6I GCGC 2 cut(s) 266, 360
HinP1I GCGC 2 cut(s) 266, 360
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 1 cut(s) 396
HpyAV CCTTC 1 cut(s) 232
HpyCH4V TGCA 3 cut(s) 29, 122, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 362
HpyF3I CTNAG 3 cut(s) 55, 106, 137
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 2 cut(s) 74, 241
HspAI GCGC 2 cut(s) 266, 360
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 126, 139, 177, 346, 370, 395
Lsp1109I GCAGC 2 cut(s) 349, 352
LweI GCATC 1 cut(s) 131
MboII GAAGA 1 cut(s) 148
MluCI AATT 1 cut(s) 182
MlyI GAGTC 1 cut(s) 13
Mph1103I ATGCAT 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 410
MvaI CCWGG 1 cut(s) 410
MvnI CGCG 2 cut(s) 266, 268
MwoI GCNNNNNNNGC 2 cut(s) 50, 362
NlaIII CATG 2 cut(s) 74, 241
NsiI ATGCAT 1 cut(s) 124
PceI AGGCCT 1 cut(s) 256
PkrI GCNGC 2 cut(s) 364, 367
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
SatI GCNGC 2 cut(s) 363, 366
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 410
SetI ASST 6 cut(s) 12, 27, 112, 138, 314, 414
SfaNI GCATC 1 cut(s) 131
Sse9I AATT 1 cut(s) 182
SseBI AGGCCT 1 cut(s) 256
StuI AGGCCT 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 408
TasI AATT 1 cut(s) 182
TscAI CASTG 3 cut(s) 133, 145, 232
TseI GCWGC 2 cut(s) 362, 365
TspDTI ATGAA 1 cut(s) 321
TspRI CASTG 3 cut(s) 133, 145, 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.