Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Forward (+)

56259306 .. 56263691

Gene Structure 4386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019747

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGAATGAGTATGCCACCCCTCCCGCTCCTCCAATGACTTATTATCCCACCCTAATGACTTATCATCCCACCACCGCTCCCTCTCATTATCCTTCCATCGCTTCCACTCCTACAAGCACTCCTCCGACGACCAGCACTACCGTGTCTTCTCCTCATTATCCCCTCACCGCTCCCCCTCCTACAAGCACTCCTCCGATGACCAGCACTACCGTGTCTCCTCCTTATTATCCCCCCACCGCTCCCCCTCCTACAAGCACTCCTCCGATGACCAGCACTACCGTGTCTCCTCCTTATTATCCCCCCACCGCTCCCCCTCCTACAAGCACTCCTCCGATGACCAGCACTACCGTGTCTCCTCCTTATTATCCCCCCACCGCTCCTCATCCTCCGCCGCCCAGAGGGAACTTGCCATCGAGCACGCCGGTCGGGGTTATAGTCGGAGTTGCGACAGGAGGGTTCAGTGTACTTGTTGTAGTGGTCATTATCTTTTTTATCTATCGGAGACGGAAGAACAGGTTAGCGAGAGCTAATGAGCCAGGGCAACAACCCAAAGATAAACCGCCCCCAGCCTTTGGATTTTCCAAAAGCACATTTACATATGAAGAATTAGTCATGGCAACAAATGGATTCTCCAACAACAATCTTCTTGGTCAAGGTGGCTTTGGTTTTGTCCATAAAGGTATTCTTCCAAATGGGAAAGTGGTTGCAATTAAACAGCTGAAAGCTGGGAGTGGACAGGGGGAGCGTGAATTCCAGGCAGAGGTTGAAGTCATTAATCGTGTCCATCACAGACATCTTGTATCACTGGTTGGATACTGCATTAGTGGGGCCCAGAGATTGCTTGTTTATGAGTTCGTTTCCAACAACACCTTGGAATTTCACTTGCATGGAAAGGGGCGACCAACTATGACTTGGCCAACAAGAATGAAAATTGCTCTAGGATCTGCAAAAGGATTGGCATATCTCCATGAGGACTGTCATCCCAAGATCATACATCGTGACATTAAGGCTGCCAATATTCTTATTGATGACAACTTTGAGGCAAAGTTGGTCACAAAGCTGGCAAAGGTAGGTTGTAATAGCTTTCATATTTTGATATATAAGCTCATGATATACCTAGCTCCTGAATATGCATCCAGTGGAAAGCTCAGTGATAAGTCAGATATCTTCTCTTTCGGGGTCGTGCTATTGGAGTTGATTACTGGACGCCGACCCATTGATAAAACTCGTTCCTTCACTGATGATAGCATGGTTGAGTGGGTGCGTATACAATATTCTCACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

429

Amino Acids

46.79

Weight (kDa)

9.42

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	211 - 410	9.2e-32	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	213 - 410	7.5e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	572
AccBSI	CCGCTC	6 cut(s)	26, 77, 170, 239, 308, 377
AccI	GTMKAC	1 cut(s)	1267
AciI	CCGC	9 cut(s)	24, 75, 168, 237, 306, 375, 389, 392, 560
AclWI	GGATC	1 cut(s)	949
AcoI	YGGCCR	1 cut(s)	914
AcsI	RAATTY	2 cut(s)	749, 875
AcyI	GRCGYC	1 cut(s)	1207
AfaI	GTAC	1 cut(s)	465
AfiI	CCNNNNNNNGG	3 cut(s)	398, 572, 760
AgsI	TTSAA	1 cut(s)	767
AjnI	CCWGG	2 cut(s)	535, 753
AleI	CACNNNNGTG	4 cut(s)	140, 209, 278, 347
AluBI	AGCT	8 cut(s)	527, 718, 725, 1060, 1083, 1105, 1121, 1147
AluI	AGCT	8 cut(s)	527, 718, 725, 1060, 1083, 1105, 1121, 1147
Alw21I	GWGCWC	1 cut(s)	419
Alw26I	GTCTC	4 cut(s)	219, 288, 357, 496
AlwI	GGATC	1 cut(s)	949
AoxI	GGCC	2 cut(s)	828, 914
ApaI	GGGCCC	1 cut(s)	832
ApeKI	GCWGC	1 cut(s)	1010
ApoI	RAATTY	2 cut(s)	749, 875
AseI	ATTAAT	1 cut(s)	774
AspS9I	GGNCC	2 cut(s)	828, 829
AsuHPI	GGTGA	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	832
BalI	TGGCCA	1 cut(s)	916
BanII	GRGCYC	1 cut(s)	832
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	419
BbvI	GCAGC	1 cut(s)	997
BccI	CCATC	3 cut(s)	104, 418, 792
BcgI	CGANNNNNNTGC	2 cut(s)	406, 440
BciT130I	CCWGG	2 cut(s)	537, 755
BciVI	GTATCC	1 cut(s)	806
BcoDI	GTCTC	4 cut(s)	219, 288, 357, 496
BfaI	CTAG	2 cut(s)	938, 1118
BfuI	GTATCC	1 cut(s)	806
BisI	GCNGC	2 cut(s)	392, 1011
BlsI	GCNGC	2 cut(s)	393, 1012
Bme1390I	CCNGG	2 cut(s)	537, 755
BmgT120I	GGNCC	2 cut(s)	828, 829
BmiI	GGNNCC	2 cut(s)	829, 830
BmrFI	CCNGG	2 cut(s)	537, 755
BmsI	GCATC	1 cut(s)	1142
BpiI	GAAGAC	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	1207
BsaJI	CCNNGG	2 cut(s)	536, 870
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 572, 760
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	3 cut(s)	810, 1137, 1207
BseBI	CCWGG	2 cut(s)	537, 755
BseDI	CCNNGG	2 cut(s)	536, 870
BseGI	GGATG	4 cut(s)	64, 382, 979, 1133
BseLI	CCNNNNNNNGG	3 cut(s)	398, 572, 760
BseMII	CTCAG	1 cut(s)	1162
BseNI	ACTGG	3 cut(s)	810, 1137, 1207
BseSI	GKGCMC	1 cut(s)	832
BseXI	GCAGC	1 cut(s)	997
BseYI	CCCAGC	2 cut(s)	565, 725
Bsh1285I	CGRYCG	1 cut(s)	426
BshFI	GGCC	2 cut(s)	830, 916
BsiEI	CGRYCG	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	422
BslI	CCNNNNNNNGG	3 cut(s)	398, 572, 760
BsmAI	GTCTC	4 cut(s)	219, 288, 357, 496
BsmBI	CGTCTC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	830, 916
Bsp120I	GGGCCC	1 cut(s)	828
Bsp1286I	GDGCHC	2 cut(s)	419, 832
Bsp143I	GATC	2 cut(s)	941, 987
BspACI	CCGC	9 cut(s)	24, 75, 168, 237, 306, 375, 389, 392, 560
BspANI	GGCC	2 cut(s)	830, 916
BspCNI	CTCAG	1 cut(s)	1161
BspHI	TCATGA	1 cut(s)	1107
BspLI	GGNNCC	2 cut(s)	829, 830
BspPI	GGATC	1 cut(s)	949
BsrBI	CCGCTC	6 cut(s)	26, 77, 170, 239, 308, 377
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	3 cut(s)	810, 1137, 1207
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	536, 870
BssMI	GATC	2 cut(s)	941, 987
BssNAI	GTATAC	1 cut(s)	1268
BssNI	GRCGYC	1 cut(s)	1207
BssT1I	CCWWGG	1 cut(s)	870
Bst1107I	GTATAC	1 cut(s)	1268
Bst2UI	CCWGG	2 cut(s)	537, 755
Bst4CI	ACNGT	5 cut(s)	142, 211, 280, 349, 977
BstACI	GRCGYC	1 cut(s)	1207
BstC8I	GCNNGC	2 cut(s)	419, 1062
BstDEI	CTNAG	1 cut(s)	1148
BstF5I	GGATG	4 cut(s)	64, 382, 979, 1133
BstKTI	GATC	2 cut(s)	944, 990
BstMAI	GTCTC	4 cut(s)	219, 288, 357, 496
BstMBI	GATC	2 cut(s)	941, 987
BstMCI	CGRYCG	1 cut(s)	426
BstNI	CCWGG	2 cut(s)	537, 755
BstSCI	CCNGG	2 cut(s)	535, 753
BstSLI	GKGCMC	1 cut(s)	832
BstV1I	GCAGC	1 cut(s)	997
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	941
BstYI	RGATCY	1 cut(s)	941
BstZ17I	GTATAC	1 cut(s)	1268
BsuI	GTATCC	1 cut(s)	806
BsuRI	GGCC	2 cut(s)	830, 916
BtgZI	GCGATG	1 cut(s)	82
BtsCI	GGATG	4 cut(s)	64, 382, 979, 1133
BtsIMutI	CAGTG	5 cut(s)	466, 803, 1144, 1156, 1236
Cac8I	GCNNGC	2 cut(s)	419, 1062
CciI	TCATGA	1 cut(s)	1107
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	828, 829
CseI	GACGC	1 cut(s)	1215
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	5 cut(s)	613, 887, 968, 1108, 1249
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	1 cut(s)	1148
DpnI	GATC	2 cut(s)	943, 989
DpnII	GATC	2 cut(s)	941, 987
EaeI	YGGCCR	1 cut(s)	914
EciI	GGCGGA	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	870
Eco24I	GRGCYC	1 cut(s)	832
Eco32I	GATATC	1 cut(s)	1165
EcoO109I	RGGNCCY	1 cut(s)	828
EcoRI	GAATTC	1 cut(s)	749
EcoRII	CCWGG	2 cut(s)	535, 753
EcoRV	GATATC	1 cut(s)	1165
EcoT14I	CCWWGG	1 cut(s)	870
EcoT22I	ATGCAT	1 cut(s)	1135
EcoT38I	GRGCYC	1 cut(s)	832
ErhI	CCWWGG	1 cut(s)	870
Esp3I	CGTCTC	1 cut(s)	496
FaeI	CATG	5 cut(s)	616, 890, 971, 1111, 1252
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FatI	CATG	5 cut(s)	612, 886, 967, 1107, 1248
FauI	CCCGC	1 cut(s)	31
FauNDI	CATATG	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	1267
Fnu4HI	GCNGC	2 cut(s)	392, 1011
FokI	GGATG	4 cut(s)	51, 369, 966, 1120
FriOI	GRGCYC	1 cut(s)	832
Fsp4HI	GCNGC	2 cut(s)	392, 1011
FspBI	CTAG	2 cut(s)	938, 1118
GluI	GCNGC	2 cut(s)	392, 1011
GsaI	CCCAGC	2 cut(s)	569, 729
HaeIII	GGCC	2 cut(s)	830, 916
HapII	CCGG	1 cut(s)	422
HgaI	GACGC	1 cut(s)	1215
Hin1I	GRCGYC	1 cut(s)	1207
Hin1II	CATG	5 cut(s)	616, 890, 971, 1111, 1252
HinfI	GANTC	1 cut(s)	627
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	3 cut(s)	464, 734, 1268
Hpy188I	TCNGA	7 cut(s)	126, 195, 264, 333, 440, 501, 1162
Hpy188III	TCNNGA	3 cut(s)	998, 1108, 1124
Hpy8I	GTNNAC	3 cut(s)	464, 734, 1268
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	102, 1243
HpyCH4III	ACNGT	5 cut(s)	142, 211, 280, 349, 977
HpyCH4V	TGCA	5 cut(s)	707, 819, 886, 947, 1133
HpyF3I	CTNAG	1 cut(s)	1148
Hsp92I	GRCGYC	1 cut(s)	1207
Hsp92II	CATG	5 cut(s)	616, 890, 971, 1111, 1252
Kzo9I	GATC	2 cut(s)	941, 987
LmnI	GCTCC	8 cut(s)	31, 82, 175, 244, 313, 382, 742, 1126
Lsp1109I	GCAGC	1 cut(s)	997
LweI	GCATC	1 cut(s)	1142
MaeI	CTAG	2 cut(s)	938, 1118
MaeIII	GTNAC	2 cut(s)	998, 1051
MalI	GATC	2 cut(s)	943, 989
MbiI	CCGCTC	6 cut(s)	26, 77, 170, 239, 308, 377
MboI	GATC	2 cut(s)	941, 987
MboII	GAAGA	6 cut(s)	138, 520, 614, 635, 677, 1159
MflI	RGATCY	1 cut(s)	941
MhlI	GDGCHC	2 cut(s)	419, 832
MlsI	TGGCCA	1 cut(s)	916
MluCI	AATT	5 cut(s)	605, 708, 749, 875, 930
MluNI	TGGCCA	1 cut(s)	916
MmeI	TCCRAC	5 cut(s)	149, 418, 657, 790, 885
Mox20I	TGGCCA	1 cut(s)	916
Mph1103I	ATGCAT	1 cut(s)	1135
MscI	TGGCCA	1 cut(s)	916
MseI	TTAA	3 cut(s)	711, 774, 1005
MslI	CAYNNNNRTG	6 cut(s)	53, 140, 209, 278, 347, 885
Msp20I	TGGCCA	1 cut(s)	916
MspA1I	CMGCKG	1 cut(s)	718
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	2 cut(s)	537, 755
MvaI	CCWGG	2 cut(s)	537, 755
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	2 cut(s)	941, 987
NlaIII	CATG	5 cut(s)	616, 890, 971, 1111, 1252
NlaIV	GGNNCC	2 cut(s)	829, 830
NmuCI	GTSAC	2 cut(s)	998, 1051
NsiI	ATGCAT	1 cut(s)	1135
OliI	CACNNNNGTG	4 cut(s)	140, 209, 278, 347
PagI	TCATGA	1 cut(s)	1107
PfeI	GAWTC	1 cut(s)	627
PflMI	CCANNNNNTGG	1 cut(s)	572
PkrI	GCNGC	2 cut(s)	393, 1012
PshBI	ATTAAT	1 cut(s)	774
Psp6I	CCWGG	2 cut(s)	535, 753
PspFI	CCCAGC	2 cut(s)	565, 725
PspGI	CCWGG	2 cut(s)	535, 753
PspN4I	GGNNCC	2 cut(s)	829, 830
PspOMI	GGGCCC	1 cut(s)	828
PspPI	GGNCC	2 cut(s)	828, 829
PsuI	RGATCY	1 cut(s)	941
PvuII	CAGCTG	1 cut(s)	718
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
RseI	CAYNNNNRTG	6 cut(s)	53, 140, 209, 278, 347, 885
SaqAI	TTAA	3 cut(s)	711, 774, 1005
SatI	GCNGC	2 cut(s)	392, 1011
Sau3AI	GATC	2 cut(s)	941, 987
Sau96I	GGNCC	2 cut(s)	828, 829
ScrFI	CCNGG	2 cut(s)	537, 755
SduI	GDGCHC	2 cut(s)	419, 832
SfaNI	GCATC	1 cut(s)	1142
SmiMI	CAYNNNNRTG	6 cut(s)	53, 140, 209, 278, 347, 885
Sse9I	AATT	5 cut(s)	605, 708, 749, 875, 930
SsiI	CCGC	9 cut(s)	24, 75, 168, 237, 306, 375, 389, 392, 560
SspI	AATATT	2 cut(s)	1018, 1274
SspMI	CTAG	2 cut(s)	938, 1118
StyD4I	CCNGG	2 cut(s)	535, 753
StyI	CCWWGG	1 cut(s)	870
TaaI	ACNGT	5 cut(s)	142, 211, 280, 349, 977
TaqI	TCGA	1 cut(s)	413
TasI	AATT	5 cut(s)	605, 708, 749, 875, 930
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	1 cut(s)	627
Tru1I	TTAA	3 cut(s)	711, 774, 1005
Tru9I	TTAA	3 cut(s)	711, 774, 1005
TscAI	CASTG	5 cut(s)	466, 810, 1144, 1156, 1243
TseFI	GTSAC	2 cut(s)	998, 1051
TseI	GCWGC	1 cut(s)	1010
Tsp45I	GTSAC	2 cut(s)	998, 1051
TspDTI	ATGAA	4 cut(s)	17, 615, 941, 1076
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	5 cut(s)	466, 810, 1144, 1156, 1243
Van91I	CCANNNNNTGG	1 cut(s)	572
VspI	ATTAAT	1 cut(s)	774
XapI	RAATTY	2 cut(s)	749, 875
XcmI	CCANNNNNNNNNTGG	2 cut(s)	868, 909
XmiI	GTMKAC	1 cut(s)	1267
XspI	CTAG	2 cut(s)	938, 1118
Zsp2I	ATGCAT	1 cut(s)	1135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.