RchiOBHm_Chr6g0297471

proline-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
59201874 .. 59203171
1298 bp
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UTR
Exon/CDS
Intron
PRQ26699

Sequence Viewer

Length: 279 bp
ATGCAGTCTAAATACTTAGCTCCTGAATATGCATCCAGTGGAAAGCTCAGTGATAAATCAGATGTCTTCTCATTCGGGGTTGCAAGGCCTTTGCTTGCGCAAGCATTGGAAAAGGGAAACTTTGATGGTCTTGTTGATGCAAGGTTGCAGAATGATTACAACTCCAGCGAAATGGCTTGTATGGTTGCCAGCGCTGCTGCTTGTGTGCGTCATTCTGCCTGCCGTCGGCCAAGAATGAGCCAGGTAATCTTACAAAGTTCCGAAGTTAGTTTGAGCTGA

Protein Analysis

92

Amino Acids

9.95

Weight (kDa)

7.71

Isoelectric Point (pI)

74.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 99
AcoI YGGCCR 1 cut(s) 227
AfeI AGCGCT 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 225
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 3 cut(s) 20, 46, 276
AluI AGCT 3 cut(s) 20, 46, 276
Aor51HI AGCGCT 1 cut(s) 193
AoxI GGCC 2 cut(s) 86, 227
ApeKI GCWGC 2 cut(s) 194, 197
AspLEI GCGC 2 cut(s) 100, 194
BbsI GAAGAC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 181, 184
BccI CCATC 1 cut(s) 119
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 242
BfoI RGCGCY 1 cut(s) 195
BisI GCNGC 2 cut(s) 195, 198
BlsI GCNGC 2 cut(s) 196, 199
Bme1390I CCNGG 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 2 cut(s) 41, 127
BpiI GAAGAC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 181, 184
BshFI GGCC 2 cut(s) 88, 229
BslI CCNNNNNNNGG 1 cut(s) 225
BsnI GGCC 2 cut(s) 88, 229
BspANI GGCC 2 cut(s) 88, 229
BspCNI CTCAG 1 cut(s) 60
BsrI ACTGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 242
BstC8I GCNNGC 4 cut(s) 96, 102, 190, 220
BstDEI CTNAG 2 cut(s) 16, 47
BstF5I GGATG 1 cut(s) 32
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 2 cut(s) 100, 194
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 181, 184
BstV2I GAAGAC 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 172
BsuRI GGCC 2 cut(s) 88, 229
BtsCI GGATG 1 cut(s) 32
BtsIMutI CAGTG 2 cut(s) 43, 55
Cac8I GCNNGC 4 cut(s) 96, 102, 190, 220
CfoI GCGC 2 cut(s) 100, 194
CseI GACGC 1 cut(s) 197
CviJI RGCY 7 cut(s) 20, 46, 88, 176, 229, 240, 276
CviKI_1 RGCY 7 cut(s) 20, 46, 88, 176, 229, 240, 276
DdeI CTNAG 2 cut(s) 16, 47
EaeI YGGCCR 1 cut(s) 227
Eco147I AGGCCT 1 cut(s) 88
Eco47III AGCGCT 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 240
EcoT22I ATGCAT 1 cut(s) 34
FaiI YATR 2 cut(s) 30, 182
FalI AAGNNNNNCTT 2 cut(s) 104, 136
Fnu4HI GCNGC 2 cut(s) 195, 198
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 2 cut(s) 195, 198
FspI TGCGCA 1 cut(s) 99
GlaI GCGC 2 cut(s) 99, 193
GluI GCNGC 2 cut(s) 195, 198
GsuI CTGGAG 1 cut(s) 148
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 2 cut(s) 88, 229
HgaI GACGC 1 cut(s) 197
HhaI GCGC 2 cut(s) 100, 194
Hin6I GCGC 2 cut(s) 98, 192
HinP1I GCGC 2 cut(s) 98, 192
Hpy188I TCNGA 2 cut(s) 61, 262
Hpy188III TCNNGA 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 228
HpyCH4V TGCA 5 cut(s) 4, 32, 83, 140, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 16, 47
HspAI GCGC 2 cut(s) 98, 192
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 7 cut(s) 36, 49, 178, 202, 227, 232, 254
Lsp1109I GCAGC 2 cut(s) 181, 184
LweI GCATC 2 cut(s) 41, 127
MboII GAAGA 1 cut(s) 58
Mph1103I ATGCAT 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 194
NsbI TGCGCA 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 34
PceI AGGCCT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 196, 199
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
SatI GCNGC 2 cut(s) 195, 198
ScrFI CCNGG 1 cut(s) 242
SetI ASST 5 cut(s) 22, 48, 146, 246, 278
SfaNI GCATC 2 cut(s) 41, 127
SseBI AGGCCT 1 cut(s) 88
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 240
TscAI CASTG 2 cut(s) 43, 55
TseI GCWGC 2 cut(s) 194, 197
TspRI CASTG 2 cut(s) 43, 55
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.