RchiOBHm_Chr2g0138521

proline-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
56227787 .. 56230380
2594 bp
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UTR
Exon/CDS
Intron
PRQ50919

Sequence Viewer

Length: 225 bp
ATGCTATTGACATGCTTACTTGGAAACACCACTTCTAACTGTACATTTGGTAAAGTGAATGTATCTATTGTTCGGGCAAGACCGTTGTTCAGGCAAGCATTGGATCAGGGCAACTTTGATAGCCTTGTTGACATGAGGCTGCAGAATGACTACATCTCCAGTGAAATGGCTTTTATGGCTGCTTGCATCCGTCATTCTGCTCAACGTTGGGCACGAATGAGCTAG

Protein Analysis

74

Amino Acids

8.37

Weight (kDa)

9.15

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 205
AclWI GGATC 1 cut(s) 111
AfaI GTAC 1 cut(s) 43
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
AlwI GGATC 1 cut(s) 111
ApeKI GCWGC 2 cut(s) 139, 179
BaeGI GKGCMC 1 cut(s) 214
BbvI GCAGC 2 cut(s) 126, 166
BfaI CTAG 1 cut(s) 223
BfmI CTRYAG 1 cut(s) 140
BisI GCNGC 2 cut(s) 140, 180
BlsI GCNGC 2 cut(s) 141, 181
BmsI GCATC 1 cut(s) 195
BpmI CTGGAG 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bse1I ACTGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 159
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 2 cut(s) 126, 166
Bsp1286I GDGCHC 1 cut(s) 214
Bsp1407I TGTACA 1 cut(s) 41
Bsp143I GATC 1 cut(s) 103
BspMAI CTGCAG 1 cut(s) 144
BspPI GGATC 1 cut(s) 111
BsrGI TGTACA 1 cut(s) 41
BsrI ACTGG 1 cut(s) 159
BssMI GATC 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 41, 84
BstAUI TGTACA 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 96, 184
BstF5I GGATG 1 cut(s) 186
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 2 cut(s) 126, 166
BstXI CCANNNNNNTGG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 96, 184
Csp6I GTAC 1 cut(s) 42
CviAII CATG 2 cut(s) 12, 133
CviJI RGCY 5 cut(s) 123, 139, 170, 179, 222
CviKI_1 RGCY 5 cut(s) 123, 139, 170, 179, 222
CviQI GTAC 1 cut(s) 42
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
FaeI CATG 2 cut(s) 15, 136
FaiI YATR 3 cut(s) 13, 134, 176
FatI CATG 2 cut(s) 11, 132
Fnu4HI GCNGC 2 cut(s) 140, 180
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 2 cut(s) 140, 180
FspBI CTAG 1 cut(s) 223
GluI GCNGC 2 cut(s) 140, 180
GsuI CTGGAG 1 cut(s) 142
Hin1II CATG 2 cut(s) 15, 136
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 130
HpyCH4III ACNGT 2 cut(s) 41, 84
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 2 cut(s) 142, 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 2 cut(s) 15, 136
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 3 cut(s) 76, 92, 172
Lsp1109I GCAGC 2 cut(s) 126, 166
LweI GCATC 1 cut(s) 195
MaeI CTAG 1 cut(s) 223
MaeII ACGT 1 cut(s) 205
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 214
MnlI CCTC 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 15, 136
NspI RCATGY 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 211
PkrI GCNGC 2 cut(s) 141, 181
Psp1406I AACGTT 1 cut(s) 205
PsrI GAACNNNNNNTAC 2 cut(s) 54, 86
PstI CTGCAG 1 cut(s) 144
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SatI GCNGC 2 cut(s) 140, 180
Sau3AI GATC 1 cut(s) 103
SduI GDGCHC 1 cut(s) 214
SetI ASST 2 cut(s) 208, 224
SfaNI GCATC 1 cut(s) 195
SfcI CTRYAG 1 cut(s) 140
SspMI CTAG 1 cut(s) 223
TaaI ACNGT 2 cut(s) 41, 84
TaiI ACGT 1 cut(s) 208
TatI WGTACW 1 cut(s) 41
TscAI CASTG 1 cut(s) 166
TseI GCWGC 2 cut(s) 139, 179
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 1 cut(s) 166
XceI RCATGY 1 cut(s) 15
XspI CTAG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.