Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001011

Physical Location & Seq

Genomic Coordinates Forward (+)

56303785 .. 56307671

Gene Structure 3887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50925

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGACTTATTCTCCCAGCACCAATCCCGCTCCTACAAGCACTCCCTCGCCCACGACCAGCACTACCGTGTCTCCAACTTATTCTCCCCCCACCGCTCCTCCTCCTTCGCCGCCCACAGGGAACTTGCCATCGACCACGCCGGTCGGGGTTATAGTAGGAGTTGCGACAGGAGGGTTCAGTGTACTTGTTGTAGTGGTCATTATCTTCGTTATCTATCGGAGACGGAAGAACAGGTTAGCGAGAGCTAATGAGTCAGGGCAACAACCCAAAGATAAACCGCCCCCAGCCTTTGGATTTTCCGAAAGCACATTTACATATGAAGAATTAGTCAGGGCAACAAATGGATTCTCCAACGACAATCTTCTTGGTCAAGGAGGCTTTGGTTTTGTCCATAAAGGTATTCTTCCAAATGGGAAAGTGGTTGCAATTAAACAGCTGAAAGCTGGGAGTGGACAGGGGGACCGTGAATTCCAGGCAGAGGTTGAAGTCATTAATCGTGTCCATCACAGACATCTTGTATCACTGGTTGGATACTGCATTAGTGGGGCCCAGAGATTGCTTGTTTATGAGTTCATTTCCAACAACACCTTAGAATTTCACTTGCATGGAAAGGGGCGACCAACTATGACTTGGCCGACAAGAATGAGAATTGCTCTAGGATCTGCAAAAGGATTGGCATATCTCCATGAGTACTGTCATCCCAAGATCATACACCGTGACATCAAGGCTGCCAATATTCTTATTGATGACAACTTTGAGGCAAAGGTTGCAGACTTTGGACTTGCCAAGTTTGCCTTAGATACAGATACTCATGTCTCCACAAGGGTTATGGGAACTTTTGGATACTTAGATCCTGAATATGCATCCAGTGGAAAGCTCAGTGATAAGTCAGATGTCTTCTCATTCGGAGTCGTGCTATTGGAATTGATTACTGGACGCCAACCCATTGATAAAACTCATTCCTTCACTGATGATAGCATAGTTGAGTGGGCAAGGCCTTTGCTCGCGCGAGCATTGGAAAAGGGAAACATTGATGGTCTTGTTGATGAAAGCTTGCAGAATGATTACAACTCCAGCGAAATGGCTCGTATGATTGCCTGCGCTGCTGCTTGTGTGCGACGTTCTGCCCACCGTCGGCCAAAAATGAGCCAGGTAGTTCGAGCTTTGGAAGGCAATCTGTCTCCAGATGAATTAAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

400

Amino Acids

43.59

Weight (kDa)

8.55

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	117 - 386	7e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	119 - 389	5.9e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24540 AT3G24550
fragaria_vesca	FvH4_1g04680 FvH4_1g04680 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540 FvH4_6g31540
malus_domestica	MD02G1045800.v1.1 MD15G1184000.v1.1 MD15G1318900.v1.1 MD17G1193400.v1.1
prunus_persica	Prupe.3G068800_v2.0.a1 Prupe.7G232200_v2.0.a1
pyrus_communis	pycom02g03820 pycom09g12790 pycom15g16560 pycom17g19940
rosa_chinensis	RchiOBHm_Chr2g0090291 RchiOBHm_Chr2g0138371 RchiOBHm_Chr2g0138381 RchiOBHm_Chr2g0138481 RchiOBHm_Chr2g0138511 RchiOBHm_Chr2g0138521 RchiOBHm_Chr2g0138601 RchiOBHm_Chr6g0297471
rosa_laevigata	RLG00000016095 RLG00000019740 RLG00000019744 RLG00000019747
rosa_multiflora	Rmu_co8232347.1_g000001 Rmu_co8362561.1_g000001 Rmu_sc0000436.1_g000004 Rmu_sc0001534.1_g000011 Rmu_sc0006235.1_g000002 Rmu_sc0008467.1_g000011 Rmu_sc0012206.1_g000004
rosa_roxburghii	Rroxscaffold_2G00106070 Rroxscaffold_2G00106140 Rroxscaffold_2G00106150 Rroxscaffold_2G00106280 Rroxscaffold_2G00151310
rosa_rugosa	Rorug02G0006300 Rorug02G0351700 Rorug06G0272400
rosa_samantha	Rh2AG052200 Rh2AG400100 Rh2AG400200 Rh2AG400800 Rh2CG386300 Rh2DG052100 Rh2DG419800 Rh2DG419900 Rh2DG420100 Rh2DG420600 Rh2DG421200
rosa_wichuraiana	Rw2G004470 Rw2G032550 Rw2G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	290
AccBSI	CCGCTC	2 cut(s)	29, 95
AccII	CGCG	2 cut(s)	1007, 1009
AciI	CCGC	4 cut(s)	27, 93, 110, 278
AclWI	GGATC	2 cut(s)	667, 845
AcoI	YGGCCR	2 cut(s)	632, 1136
AcsI	RAATTY	2 cut(s)	467, 593
AcyI	GRCGYC	1 cut(s)	937
AfaI	GTAC	2 cut(s)	183, 692
AfiI	CCNNNNNNNGG	4 cut(s)	116, 290, 478, 1134
AgsI	TTSAA	1 cut(s)	485
AjnI	CCWGG	2 cut(s)	471, 1149
AleI	CACNNNNGTG	1 cut(s)	65
AluBI	AGCT	6 cut(s)	245, 436, 443, 877, 1053, 1163
AluI	AGCT	6 cut(s)	245, 436, 443, 877, 1053, 1163
Alw26I	GTCTC	4 cut(s)	75, 214, 820, 1185
AlwI	GGATC	2 cut(s)	667, 845
AoxI	GGCC	4 cut(s)	546, 632, 995, 1136
ApaI	GGGCCC	1 cut(s)	550
ApeKI	GCWGC	3 cut(s)	728, 1103, 1106
ApoI	RAATTY	2 cut(s)	467, 593
AseI	ATTAAT	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	1009, 1103
AspS9I	GGNCC	3 cut(s)	460, 546, 547
AvaII	GGWCC	1 cut(s)	460
BaeGI	GKGCMC	1 cut(s)	550
BaeI	ACNNNNGTAYC	2 cut(s)	798, 831
BanII	GRGCYC	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	889
BbvI	GCAGC	3 cut(s)	715, 1090, 1093
BccI	CCATC	3 cut(s)	136, 510, 1028
BciT130I	CCWGG	2 cut(s)	473, 1151
BciVI	GTATCC	2 cut(s)	524, 836
BcoDI	GTCTC	4 cut(s)	75, 214, 820, 1185
BfaI	CTAG	1 cut(s)	656
BfuI	GTATCC	2 cut(s)	524, 836
BisI	GCNGC	4 cut(s)	110, 729, 1104, 1107
BlsI	GCNGC	4 cut(s)	111, 730, 1105, 1108
BmcAI	AGTACT	1 cut(s)	692
Bme1390I	CCNGG	2 cut(s)	473, 1151
Bme18I	GGWCC	1 cut(s)	460
BmgT120I	GGNCC	3 cut(s)	460, 546, 547
BmiI	GGNNCC	3 cut(s)	461, 547, 548
BmrFI	CCNGG	2 cut(s)	473, 1151
BmsI	GCATC	1 cut(s)	872
BpiI	GAAGAC	1 cut(s)	889
BplI	GAGNNNNNCTC	2 cut(s)	637, 669
BpmI	CTGGAG	2 cut(s)	1057, 1167
BsaHI	GRCGYC	1 cut(s)	937
BsaXI	ACNNNNNCTCC	9 cut(s)	25, 25, 55, 55, 67, 82, 85, 97, 112
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 290, 478, 1134
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	3 cut(s)	528, 867, 937
BseBI	CCWGG	2 cut(s)	473, 1151
BseGI	GGATG	2 cut(s)	697, 863
BseLI	CCNNNNNNNGG	4 cut(s)	116, 290, 478, 1134
BseMII	CTCAG	1 cut(s)	892
BseNI	ACTGG	3 cut(s)	528, 867, 937
BseRI	GAGGAG	2 cut(s)	87, 90
BseSI	GKGCMC	1 cut(s)	550
BseXI	GCAGC	3 cut(s)	715, 1090, 1093
BseYI	CCCAGC	3 cut(s)	14, 283, 443
Bsh1236I	CGCG	2 cut(s)	1007, 1009
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	4 cut(s)	548, 634, 997, 1138
BsiEI	CGRYCG	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	4 cut(s)	116, 290, 478, 1134
BsmAI	GTCTC	4 cut(s)	75, 214, 820, 1185
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	4 cut(s)	548, 634, 997, 1138
Bsp120I	GGGCCC	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	3 cut(s)	659, 705, 850
BspACI	CCGC	4 cut(s)	27, 93, 110, 278
BspANI	GGCC	4 cut(s)	548, 634, 997, 1138
BspCNI	CTCAG	1 cut(s)	891
BspFNI	CGCG	2 cut(s)	1007, 1009
BspLI	GGNNCC	3 cut(s)	461, 547, 548
BspPI	GGATC	2 cut(s)	667, 845
BsrBI	CCGCTC	2 cut(s)	29, 95
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	3 cut(s)	528, 867, 937
BssAI	RCCGGY	1 cut(s)	139
BssMI	GATC	3 cut(s)	659, 705, 850
BssNI	GRCGYC	1 cut(s)	937
Bst2UI	CCWGG	2 cut(s)	473, 1151
Bst4CI	ACNGT	5 cut(s)	67, 464, 695, 716, 1133
BstACI	GRCGYC	1 cut(s)	937
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstC8I	GCNNGC	4 cut(s)	1005, 1011, 1055, 1099
BstDEI	CTNAG	4 cut(s)	589, 796, 847, 878
BstF5I	GGATG	2 cut(s)	697, 863
BstFNI	CGCG	2 cut(s)	1007, 1009
BstHHI	GCGC	2 cut(s)	1009, 1103
BstKTI	GATC	3 cut(s)	662, 708, 853
BstMAI	GTCTC	4 cut(s)	75, 214, 820, 1185
BstMBI	GATC	3 cut(s)	659, 705, 850
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	3 cut(s)	767, 791, 1103
BstNI	CCWGG	2 cut(s)	473, 1151
BstSCI	CCNGG	2 cut(s)	471, 1149
BstSLI	GKGCMC	1 cut(s)	550
BstUI	CGCG	2 cut(s)	1007, 1009
BstV1I	GCAGC	3 cut(s)	715, 1090, 1093
BstV2I	GAAGAC	1 cut(s)	889
BstX2I	RGATCY	2 cut(s)	659, 850
BstXI	CCANNNNNNTGG	1 cut(s)	1081
BstYI	RGATCY	2 cut(s)	659, 850
BsuI	GTATCC	2 cut(s)	524, 836
BsuRI	GGCC	4 cut(s)	548, 634, 997, 1138
BtsCI	GGATG	2 cut(s)	697, 863
BtsIMutI	CAGTG	5 cut(s)	184, 521, 874, 886, 966
Cac8I	GCNNGC	4 cut(s)	1005, 1011, 1055, 1099
CfoI	GCGC	2 cut(s)	1009, 1103
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	3 cut(s)	460, 546, 547
CseI	GACGC	1 cut(s)	945
Csp6I	GTAC	2 cut(s)	182, 691
CviAII	CATG	3 cut(s)	605, 686, 812
CviQI	GTAC	2 cut(s)	182, 691
DdeI	CTNAG	4 cut(s)	589, 796, 847, 878
DpnI	GATC	3 cut(s)	661, 707, 852
DpnII	GATC	3 cut(s)	659, 705, 850
EaeI	YGGCCR	2 cut(s)	632, 1136
Eco147I	AGGCCT	1 cut(s)	997
Eco24I	GRGCYC	1 cut(s)	550
Eco47I	GGWCC	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	546
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	2 cut(s)	471, 1149
EcoT22I	ATGCAT	1 cut(s)	865
EcoT38I	GRGCYC	1 cut(s)	550
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	3 cut(s)	608, 689, 815
FalI	AAGNNNNNCTT	4 cut(s)	387, 419, 779, 811
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	3 cut(s)	604, 685, 811
FauI	CCCGC	1 cut(s)	34
FauNDI	CATATG	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	110, 729, 1104, 1107
FokI	GGATG	2 cut(s)	684, 850
FriOI	GRGCYC	1 cut(s)	550
Fsp4HI	GCNGC	4 cut(s)	110, 729, 1104, 1107
FspBI	CTAG	1 cut(s)	656
GlaI	GCGC	2 cut(s)	1008, 1102
GluI	GCNGC	4 cut(s)	110, 729, 1104, 1107
GsaI	CCCAGC	3 cut(s)	18, 287, 447
GsuI	CTGGAG	2 cut(s)	1057, 1167
HaeIII	GGCC	4 cut(s)	548, 634, 997, 1138
HapII	CCGG	1 cut(s)	140
HgaI	GACGC	1 cut(s)	945
HhaI	GCGC	2 cut(s)	1009, 1103
Hin1I	GRCGYC	1 cut(s)	937
Hin1II	CATG	3 cut(s)	608, 689, 815
Hin6I	GCGC	2 cut(s)	1007, 1101
HinP1I	GCGC	2 cut(s)	1007, 1101
HindIII	AAGCTT	1 cut(s)	1051
HinfI	GANTC	3 cut(s)	251, 345, 909
HpaII	CCGG	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	182, 452
Hpy188I	TCNGA	4 cut(s)	219, 301, 892, 908
Hpy188III	TCNNGA	2 cut(s)	854, 1184
Hpy8I	GTNNAC	2 cut(s)	182, 452
Hpy99I	CGWCG	2 cut(s)	1122, 1137
HpyAV	CCTTC	3 cut(s)	114, 973, 1163
HpyCH4III	ACNGT	5 cut(s)	67, 464, 695, 716, 1133
HpyCH4IV	ACGT	1 cut(s)	1120
HpyCH4V	TGCA	7 cut(s)	425, 537, 604, 665, 770, 863, 1057
HpyF10VI	GCNNNNNNNGC	3 cut(s)	767, 791, 1103
HpyF3I	CTNAG	4 cut(s)	589, 796, 847, 878
HpySE526I	ACGT	1 cut(s)	1120
Hsp92I	GRCGYC	1 cut(s)	937
Hsp92II	CATG	3 cut(s)	608, 689, 815
HspAI	GCGC	2 cut(s)	1007, 1101
Kzo9I	GATC	3 cut(s)	659, 705, 850
LmnI	GCTCC	2 cut(s)	34, 100
Lsp1109I	GCAGC	3 cut(s)	715, 1090, 1093
LweI	GCATC	1 cut(s)	872
MaeI	CTAG	1 cut(s)	656
MaeII	ACGT	1 cut(s)	1120
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	3 cut(s)	661, 707, 852
MbiI	CCGCTC	2 cut(s)	29, 95
MboI	GATC	3 cut(s)	659, 705, 850
MboII	GAAGA	6 cut(s)	196, 238, 332, 353, 395, 889
MflI	RGATCY	2 cut(s)	659, 850
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	7 cut(s)	323, 426, 467, 593, 648, 923, 1190
MlyI	GAGTC	2 cut(s)	260, 918
MmeI	TCCRAC	4 cut(s)	98, 375, 508, 603
MnlI	CCTC	7 cut(s)	55, 108, 111, 164, 368, 472, 751
Mph1103I	ATGCAT	1 cut(s)	865
MseI	TTAA	3 cut(s)	429, 492, 1193
MslI	CAYNNNNRTG	2 cut(s)	65, 603
MspA1I	CMGCKG	1 cut(s)	436
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	473, 1151
MvaI	CCWGG	2 cut(s)	473, 1151
MvnI	CGCG	2 cut(s)	1007, 1009
MwoI	GCNNNNNNNGC	3 cut(s)	767, 791, 1103
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	3 cut(s)	659, 705, 850
NlaIII	CATG	3 cut(s)	608, 689, 815
NlaIV	GGNNCC	3 cut(s)	461, 547, 548
NmuCI	GTSAC	1 cut(s)	716
NsiI	ATGCAT	1 cut(s)	865
OliI	CACNNNNGTG	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	997
PfeI	GAWTC	1 cut(s)	345
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	4 cut(s)	111, 730, 1105, 1108
PleI	GAGTC	2 cut(s)	259, 917
PpsI	GAGTC	2 cut(s)	259, 917
PshBI	ATTAAT	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	471, 1149
PspFI	CCCAGC	3 cut(s)	14, 283, 443
PspGI	CCWGG	2 cut(s)	471, 1149
PspN4I	GGNNCC	3 cut(s)	461, 547, 548
PspOMI	GGGCCC	1 cut(s)	546
PspPI	GGNCC	3 cut(s)	460, 546, 547
PsuI	RGATCY	2 cut(s)	659, 850
PvuII	CAGCTG	1 cut(s)	436
RsaI	GTAC	2 cut(s)	183, 692
RsaNI	GTAC	2 cut(s)	182, 691
RseI	CAYNNNNRTG	2 cut(s)	65, 603
SaqAI	TTAA	3 cut(s)	429, 492, 1193
SatI	GCNGC	4 cut(s)	110, 729, 1104, 1107
Sau3AI	GATC	3 cut(s)	659, 705, 850
Sau96I	GGNCC	3 cut(s)	460, 546, 547
ScaI	AGTACT	1 cut(s)	692
SchI	GAGTC	2 cut(s)	260, 918
ScrFI	CCNGG	2 cut(s)	473, 1151
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	1 cut(s)	872
SinI	GGWCC	1 cut(s)	460
SmiMI	CAYNNNNRTG	2 cut(s)	65, 603
Sse9I	AATT	7 cut(s)	323, 426, 467, 593, 648, 923, 1190
SseBI	AGGCCT	1 cut(s)	997
SsiI	CCGC	4 cut(s)	27, 93, 110, 278
SspI	AATATT	1 cut(s)	736
SspMI	CTAG	1 cut(s)	656
StuI	AGGCCT	1 cut(s)	997
StyD4I	CCNGG	2 cut(s)	471, 1149
TaaI	ACNGT	5 cut(s)	67, 464, 695, 716, 1133
TaiI	ACGT	1 cut(s)	1123
TaqI	TCGA	2 cut(s)	131, 1159
TasI	AATT	7 cut(s)	323, 426, 467, 593, 648, 923, 1190
TatI	WGTACW	2 cut(s)	181, 690
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	345
Tru1I	TTAA	3 cut(s)	429, 492, 1193
Tru9I	TTAA	3 cut(s)	429, 492, 1193
TscAI	CASTG	5 cut(s)	184, 528, 874, 886, 973
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	3 cut(s)	728, 1103, 1106
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	4 cut(s)	333, 562, 1062, 1203
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	5 cut(s)	184, 528, 874, 886, 973
Van91I	CCANNNNNTGG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	460
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	2 cut(s)	467, 593
XcmI	CCANNNNNNNNNTGG	2 cut(s)	627, 826
XspI	CTAG	1 cut(s)	656
ZrmI	AGTACT	1 cut(s)	692
Zsp2I	ATGCAT	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.