AT5G64950
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008917
Physical Location & Seq
Forward (+)
25953844 .. 25955202
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G64950.1

Sequence Viewer

Length: 1176 bp
ATGCAATTTCTAGCTTCTCTCGTTTCCAATTCCAGAAAGTTTGGTCGGAGATGGGATCGAGCTCTCTCGTTGCATCATTTCTCTTCGAATGCGACACCAGCTTCGATATCAAATCCAGCGTTCGTCGAGTTTCTCAGGGACAATGGGTTCCAGAAACCTCTAGCAATTGCCATCGCAATGCGTTACCCTAACCTCAAATCCCTAGAACAACCTCGGTCAGTGATTCAAATGCTTAAAAGTTACAGTTTTTCCGATACCCAGATCCAGAAATCGATCCGGGTCCATCCTCGAATGATGTTCTACAACGTGGAGAAAATTCTAGAACCCAAACTTCGATTCTTTAAAGATATTGGATTTACTGGCTCTGGTCTTGGTAAGTTCGTCTCTCAAAACTCATCAGTCGTTGGTGTAAGTCTAGTGAAGAAATTGATTCCTACCGTTGAGATTCTGAAATCGATTGTTGCCCCAAAACATGAAGACCTTCCTGTCATTCTTAGTAGATGTGGTTGGCTTCTTCTCAGTAGAGACCCTAACTTGTTTCTCTTACCAAACATCTCATACCTTGAAACCTGTGGAATTGTTGGGTCTCAGCTTGCTTCTTTACTTAGAAGACAGCCAAGAATCTTCAATCTCTCTGAGGAAAAACTCAGAGGATATGTCTCTCGTGCTTTGGATCTTGGTTTTACTTTGAACTCGAGGATGCTTGTGCACGCTGTTATCTCGTTAAGTTCTTTGAGCGAGAAAACGTTTGATCGAAAGGTTAAGTTGTTTATGGCTAATGGATTCTCTGAAGATGAGATAACAGATATTATACGAAGATCTCCAGGTTTGATCCGGTGCTCAGAAGATAAGCTTACACTGGGGTTTGAGTTTTACTTGAAGAGAATGGGGTTAGAGAGGGAAGCTTTGGCGAAACGTCCTTGTGTGTTGTCGTATAATCTTGAGAAGAGGGTGATTCCTAGGCTTAAAGTTTTGCAGATCTTGAGGGAAAAAGGGTTGTTGTTAAAAGAGGAGAAGAAGAAGAAGAACATGGTTGGCATTGTTGAGATGACTGAGGAAGCTTTTCTAGAGAAATATGTTGTGAGATTTGGAGATGAGATTGCTGAGGAACTGCTGGTTGCTTACAAGTGCGTGTGTTTAGTCGATGAAACGCTACTTGATCGTATCAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

391

Amino Acids

44.7

Weight (kDa)

9.68

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 42 - 355 2.4e-35 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 485
AclI AACGTT 1 cut(s) 746
AclWI GGATC 5 cut(s) 63, 256, 268, 681, 826
AcsI RAATTY 1 cut(s) 315
AcuI CTGAAG 1 cut(s) 810
AgsI TTSAA 5 cut(s) 227, 566, 628, 691, 880
AjnI CCWGG 1 cut(s) 823
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AloI GAACNNNNNNTCC 2 cut(s) 131, 163
AluBI AGCT 7 cut(s) 14, 62, 101, 592, 853, 905, 1061
AluI AGCT 7 cut(s) 14, 62, 101, 592, 853, 905, 1061
Alw21I GWGCWC 3 cut(s) 64, 711, 842
Alw26I GTCTC 4 cut(s) 388, 519, 591, 664
Alw44I GTGCAC 1 cut(s) 707
AlwI GGATC 5 cut(s) 63, 256, 268, 681, 826
Ama87I CYCGRG 1 cut(s) 694
ApaLI GTGCAC 1 cut(s) 707
ApoI RAATTY 1 cut(s) 315
ArsI GACNNNNNNTTYG 2 cut(s) 85, 117
Asp700I GAANNNNTTC 2 cut(s) 480, 1062
AspA2I CCTAGG 1 cut(s) 959
AspS9I GGNCC 1 cut(s) 280
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 964
AsuII TTCGAA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 694
AvaII GGWCC 1 cut(s) 280
AvrII CCTAGG 1 cut(s) 959
BaeGI GKGCMC 1 cut(s) 711
BanII GRGCYC 1 cut(s) 64
BauI CACGAG 1 cut(s) 663
BbsI GAAGAC 2 cut(s) 483, 616
Bbv12I GWGCWC 3 cut(s) 64, 711, 842
BbvCI CCTCAGC 1 cut(s) 1104
BccI CCATC 3 cut(s) 45, 179, 291
BciT130I CCWGG 1 cut(s) 825
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 4 cut(s) 388, 519, 591, 664
BfaI CTAG 7 cut(s) 11, 161, 203, 320, 416, 960, 1067
BglII AGATCT 3 cut(s) 818, 978, 1170
BlnI CCTAGG 1 cut(s) 959
Bme1390I CCNGG 2 cut(s) 278, 825
Bme18I GGWCC 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 694
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 2 cut(s) 149, 281
BmrFI CCNGG 2 cut(s) 278, 825
BmrI ACTGGG 1 cut(s) 869
BmsI GCATC 2 cut(s) 82, 690
BmuI ACTGGG 1 cut(s) 869
BpiI GAAGAC 2 cut(s) 483, 616
BpmI CTGGAG 1 cut(s) 807
Bpu10I CCTNAGC 1 cut(s) 1104
Bpu14I TTCGAA 1 cut(s) 86
BpuEI CTTGAG 2 cut(s) 962, 1003
BpuMI CCSGG 1 cut(s) 278
Bsa29I ATCGAT 2 cut(s) 272, 455
BsaI GGTCTC 2 cut(s) 519, 591
BsaJI CCNNGG 2 cut(s) 212, 959
BsaWI WCCGGW 1 cut(s) 834
Bse1I ACTGG 2 cut(s) 364, 864
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 825
BseCI ATCGAT 2 cut(s) 272, 455
BseDI CCNNGG 2 cut(s) 212, 959
BseGI GGATG 2 cut(s) 283, 705
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 8 cut(s) 148, 532, 602, 627, 661, 855, 1044, 1095
BseNI ACTGG 2 cut(s) 364, 864
BseRI GAGGAG 1 cut(s) 1025
BseSI GKGCMC 1 cut(s) 711
BshVI ATCGAT 2 cut(s) 272, 455
BsiHKAI GWGCWC 3 cut(s) 64, 711, 842
BsiHKCI CYCGRG 1 cut(s) 694
BsiSI CCGG 2 cut(s) 277, 835
BslFI GGGAC 1 cut(s) 152
BsmAI GTCTC 4 cut(s) 388, 519, 591, 664
BsmBI CGTCTC 1 cut(s) 388
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 94
Bso31I GGTCTC 2 cut(s) 519, 591
BsoBI CYCGRG 1 cut(s) 694
Bsp119I TTCGAA 1 cut(s) 86
Bsp1286I GDGCHC 3 cut(s) 64, 711, 842
BspCNI CTCAG 8 cut(s) 147, 531, 601, 628, 660, 854, 1045, 1096
BspDI ATCGAT 2 cut(s) 272, 455
BspLI GGNNCC 2 cut(s) 149, 281
BspPI GGATC 5 cut(s) 63, 256, 268, 681, 826
BspT104I TTCGAA 1 cut(s) 86
BspTNI GGTCTC 2 cut(s) 519, 591
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 2 cut(s) 364, 864
BssECI CCNNGG 2 cut(s) 212, 959
BssSI CACGAG 1 cut(s) 663
BssT1I CCWWGG 1 cut(s) 959
Bst2BI CACGAG 1 cut(s) 663
Bst2UI CCWGG 1 cut(s) 825
Bst4CI ACNGT 2 cut(s) 245, 439
Bst6I CTCTTC 3 cut(s) 88, 875, 941
BstBI TTCGAA 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 594, 711
BstF5I GGATG 2 cut(s) 283, 705
BstMAI GTCTC 4 cut(s) 388, 519, 591, 664
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 825
BstSCI CCNGG 2 cut(s) 276, 823
BstSLI GKGCMC 1 cut(s) 711
BstV2I GAAGAC 2 cut(s) 483, 616
BstX2I RGATCY 5 cut(s) 261, 673, 818, 978, 1170
BstYI RGATCY 5 cut(s) 261, 673, 818, 978, 1170
Bsu15I ATCGAT 2 cut(s) 272, 455
BsuTUI ATCGAT 2 cut(s) 272, 455
BtgZI GCGATG 1 cut(s) 157
BtsCI GGATG 2 cut(s) 283, 705
BtsIMutI CAGTG 2 cut(s) 225, 857
Cac8I GCNNGC 2 cut(s) 594, 711
Cfr13I GGNCC 1 cut(s) 280
ClaI ATCGAT 2 cut(s) 272, 455
CviAII CATG 2 cut(s) 473, 1030
DraI TTTAAA 1 cut(s) 343
DrdI GACNNNNNNGTC 1 cut(s) 485
DseDI GACNNNNNNGTC 1 cut(s) 485
Eam1104I CTCTTC 3 cut(s) 88, 875, 941
EarI CTCTTC 3 cut(s) 88, 875, 941
Ecl136II GAGCTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 959
Eco24I GRGCYC 1 cut(s) 64
Eco31I GGTCTC 2 cut(s) 519, 591
Eco32I GATATC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 810
Eco88I CYCGRG 1 cut(s) 694
EcoICRI GAGCTC 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 823
EcoRV GATATC 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 959
EcoT38I GRGCYC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 959
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 2 cut(s) 476, 1033
FaiI YATR 8 cut(s) 474, 559, 657, 773, 812, 936, 1031, 1077
FalI AAGNNNNNCTT 2 cut(s) 837, 869
FaqI GGGAC 1 cut(s) 152
FatI CATG 2 cut(s) 472, 1029
FokI GGATG 2 cut(s) 270, 712
FriOI GRGCYC 1 cut(s) 64
FspBI CTAG 7 cut(s) 11, 161, 203, 320, 416, 960, 1067
GsuI CTGGAG 1 cut(s) 807
HapII CCGG 2 cut(s) 277, 835
Hin1II CATG 2 cut(s) 476, 1033
HindIII AAGCTT 3 cut(s) 851, 903, 1059
HinfI GANTC 7 cut(s) 223, 336, 430, 445, 621, 783, 955
HpaII CCGG 2 cut(s) 277, 835
HphI GGTGA 1 cut(s) 964
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 7 cut(s) 48, 253, 450, 637, 650, 790, 844
Hpy188III TCNNGA 8 cut(s) 33, 151, 265, 320, 941, 982, 1067, 1168
Hpy8I GTNNAC 1 cut(s) 709
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 2 cut(s) 245, 439
HpyCH4IV ACGT 3 cut(s) 306, 746, 916
HpyCH4V TGCA 4 cut(s) 4, 73, 709, 976
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpySE526I ACGT 3 cut(s) 306, 746, 916
Hsp92II CATG 2 cut(s) 476, 1033
LweI GCATC 2 cut(s) 82, 690
MaeI CTAG 7 cut(s) 11, 161, 203, 320, 416, 960, 1067
MaeII ACGT 3 cut(s) 306, 746, 916
MaeIII GTNAC 2 cut(s) 182, 239
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 5 cut(s) 261, 673, 818, 978, 1170
MhlI GDGCHC 3 cut(s) 64, 711, 842
MluCI AATT 6 cut(s) 5, 28, 165, 315, 425, 576
MmeI TCCRAC 1 cut(s) 26
MroXI GAANNNNTTC 2 cut(s) 480, 1062
MseI TTAA 6 cut(s) 234, 342, 725, 762, 966, 1004
MslI CAYNNNNRTG 1 cut(s) 176
MspI CCGG 2 cut(s) 277, 835
MspR9I CCNGG 2 cut(s) 278, 825
MunI CAATTG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 1 cut(s) 825
MwoI GCNNNNNNNGC 1 cut(s) 98
NciI CCSGG 1 cut(s) 278
NlaIII CATG 2 cut(s) 476, 1033
NlaIV GGNNCC 2 cut(s) 149, 281
NspV TTCGAA 1 cut(s) 86
PaeR7I CTCGAG 1 cut(s) 694
PctI GAATGC 1 cut(s) 94
PdmI GAANNNNTTC 2 cut(s) 480, 1062
PfeI GAWTC 7 cut(s) 223, 336, 430, 445, 621, 783, 955
Psp124BI GAGCTC 1 cut(s) 64
Psp1406I AACGTT 1 cut(s) 746
Psp6I CCWGG 1 cut(s) 823
PspGI CCWGG 1 cut(s) 823
PspN4I GGNNCC 2 cut(s) 149, 281
PspPI GGNCC 1 cut(s) 280
PspXI VCTCGAGB 1 cut(s) 694
PsuI RGATCY 5 cut(s) 261, 673, 818, 978, 1170
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 64
SaqAI TTAA 6 cut(s) 234, 342, 725, 762, 966, 1004
Sau96I GGNCC 1 cut(s) 280
ScrFI CCNGG 2 cut(s) 278, 825
SduI GDGCHC 3 cut(s) 64, 711, 842
SfaNI GCATC 2 cut(s) 82, 690
Sfr274I CTCGAG 1 cut(s) 694
SfuI TTCGAA 1 cut(s) 86
SinI GGWCC 1 cut(s) 280
SlaI CTCGAG 1 cut(s) 694
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 3 cut(s) 694, 941, 982
SmoI CTYRAG 3 cut(s) 694, 941, 982
Sse9I AATT 6 cut(s) 5, 28, 165, 315, 425, 576
SspMI CTAG 7 cut(s) 11, 161, 203, 320, 416, 960, 1067
SstI GAGCTC 1 cut(s) 64
StyD4I CCNGG 2 cut(s) 276, 823
StyI CCWWGG 1 cut(s) 959
TaaI ACNGT 2 cut(s) 245, 439
TaiI ACGT 3 cut(s) 309, 749, 919
TaqII GACCGA 1 cut(s) 204
TasI AATT 6 cut(s) 5, 28, 165, 315, 425, 576
TfiI GAWTC 7 cut(s) 223, 336, 430, 445, 621, 783, 955
Tru1I TTAA 6 cut(s) 234, 342, 725, 762, 966, 1004
Tru9I TTAA 6 cut(s) 234, 342, 725, 762, 966, 1004
TscAI CASTG 2 cut(s) 225, 864
TspDTI ATGAA 2 cut(s) 489, 1161
TspRI CASTG 2 cut(s) 225, 864
VneI GTGCAC 1 cut(s) 707
VpaK11BI GGWCC 1 cut(s) 280
XapI RAATTY 1 cut(s) 315
XbaI TCTAGA 2 cut(s) 319, 1066
XhoI CTCGAG 1 cut(s) 694
XmaJI CCTAGG 1 cut(s) 959
XmnI GAANNNNTTC 2 cut(s) 480, 1062
XspI CTAG 7 cut(s) 11, 161, 203, 320, 416, 960, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.