RLG00000004514
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008917
Physical Location & Seq
Forward (+)
59965768 .. 59967006
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004514

Sequence Viewer

Length: 573 bp
ATGAACCTCCGCCCTAGTCAGTGCCACTTGACCACGGCCAGAGAGGGAAGAGGCCAATGCTTGAAGCACATCCGCTTTTCAAATTTCAATCCAGTGGTTCTTAAAGACCCAATTGTGCTTGAAAGTGATGCAAAATCTGTGCTTGAGTTTTTTAGAAATCATGGGTTTAGTGAAAAGGATATATTGGGTTTTCGGAACTTGACATTGCCAAGGGTTTTATCCAGTGAGCCTTATATTCTCACAAGGAGCCTTAAAAATCAAATTGCTCCGAGTGTTGAAACGCTTAGGCGAGTTCTTGGCTGTGATAAGGATGTTGTGAAGGTTGTAAAGAAATGCTATCGGATACTTGAAAAATCTTTGGAGAAGGTGCTTGAGCCGAATATAGATATATTGAGGAGCCATGCGGTGATGAGTAAAGCACTCTGGGAGCAGAAGTTGGAAACTTATAGGAGTTGTGTGAAGAAGATTCAGAAAATGATGAATTTCTTCCTGAGTAAAGTGAATTTGAATCCCTCGACTATTTCAAAGTATCCAAATCTTTCAATGCTTAGCTTGGAGAAGAGTTATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

191

Amino Acids

21.93

Weight (kDa)

9.75

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 62 - 187 1.5e-08 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 10, 73, 404
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 3 cut(s) 82, 481, 502
AgsI TTSAA 9 cut(s) 64, 81, 88, 122, 278, 350, 508, 525, 543
AluBI AGCT 1 cut(s) 552
AluI AGCT 1 cut(s) 552
AoxI GGCC 2 cut(s) 36, 52
ApoI RAATTY 3 cut(s) 82, 481, 502
Asp700I GAANNNNTTC 1 cut(s) 485
AsuHPI GGTGA 1 cut(s) 418
BceAI ACGGC 1 cut(s) 51
BciVI GTATCC 2 cut(s) 336, 540
BfaI CTAG 2 cut(s) 15, 571
BfuI GTATCC 2 cut(s) 336, 540
BlpI GCTNAGC 1 cut(s) 548
BmiI GGNNCC 2 cut(s) 248, 398
BmsI GCATC 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 284
Bpu1102I GCTNAGC 1 cut(s) 548
BpuEI CTTGAG 2 cut(s) 164, 392
BsaJI CCNNGG 2 cut(s) 33, 209
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bse1I ACTGG 2 cut(s) 92, 222
Bse3DI GCAATG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 33, 209
BseGI GGATG 2 cut(s) 69, 316
BseMI GCAATG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 2 cut(s) 92, 222
BseRI GAGGAG 1 cut(s) 409
BshFI GGCC 2 cut(s) 38, 54
BsnI GGCC 2 cut(s) 38, 54
Bsp1720I GCTNAGC 1 cut(s) 548
BspACI CCGC 3 cut(s) 10, 73, 404
BspANI GGCC 2 cut(s) 38, 54
BspCNI CTCAG 1 cut(s) 483
BspLI GGNNCC 2 cut(s) 248, 398
BsrDI GCAATG 1 cut(s) 203
BsrI ACTGG 2 cut(s) 92, 222
BssECI CCNNGG 2 cut(s) 33, 209
BssT1I CCWWGG 1 cut(s) 209
Bst6I CTCTTC 2 cut(s) 43, 554
BstDEI CTNAG 3 cut(s) 284, 491, 548
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 69, 316
BsuI GTATCC 2 cut(s) 336, 540
BsuRI GGCC 2 cut(s) 38, 54
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 69, 316
BtsIMutI CAGTG 3 cut(s) 26, 99, 229
CviAII CATG 2 cut(s) 161, 401
CviJI RGCY 8 cut(s) 38, 54, 229, 249, 300, 376, 399, 552
CviKI_1 RGCY 8 cut(s) 38, 54, 229, 249, 300, 376, 399, 552
DdeI CTNAG 3 cut(s) 284, 491, 548
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 43, 554
EarI CTCTTC 2 cut(s) 43, 554
Eco130I CCWWGG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 2 cut(s) 164, 404
FaiI YATR 7 cut(s) 162, 182, 234, 383, 389, 402, 447
FatI CATG 2 cut(s) 160, 400
FokI GGATG 2 cut(s) 56, 323
FspBI CTAG 2 cut(s) 15, 571
HaeIII GGCC 2 cut(s) 38, 54
Hin1II CATG 2 cut(s) 164, 404
HinfI GANTC 2 cut(s) 466, 508
HphI GGTGA 1 cut(s) 418
Hpy188I TCNGA 4 cut(s) 195, 270, 342, 471
Hpy188III TCNNGA 1 cut(s) 490
HpyAV CCTTC 2 cut(s) 313, 358
HpyCH4V TGCA 1 cut(s) 131
HpyF3I CTNAG 3 cut(s) 284, 491, 548
Hsp92II CATG 2 cut(s) 164, 404
LmnI GCTCC 4 cut(s) 246, 271, 396, 427
LpnPI CCDG 5 cut(s) 52, 105, 235, 409, 503
LweI GCATC 1 cut(s) 118
MaeI CTAG 2 cut(s) 15, 571
MboII GAAGA 5 cut(s) 60, 472, 475, 478, 571
MfeI CAATTG 1 cut(s) 111
MluCI AATT 5 cut(s) 82, 111, 261, 481, 502
MmeI TCCRAC 1 cut(s) 417
MnlI CCTC 5 cut(s) 17, 37, 44, 387, 523
MroXI GAANNNNTTC 1 cut(s) 485
MseI TTAA 2 cut(s) 102, 252
MunI CAATTG 1 cut(s) 111
NlaIII CATG 2 cut(s) 164, 404
NlaIV GGNNCC 2 cut(s) 248, 398
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 2 cut(s) 466, 508
PspN4I GGNNCC 2 cut(s) 248, 398
SaqAI TTAA 2 cut(s) 102, 252
SetI ASST 4 cut(s) 9, 324, 369, 554
SfaNI GCATC 1 cut(s) 118
SmlI CTYRAG 2 cut(s) 143, 371
SmoI CTYRAG 2 cut(s) 143, 371
Sse9I AATT 5 cut(s) 82, 111, 261, 481, 502
SsiI CCGC 3 cut(s) 10, 73, 404
SspMI CTAG 2 cut(s) 15, 571
StyI CCWWGG 1 cut(s) 209
TaqI TCGA 1 cut(s) 515
TasI AATT 5 cut(s) 82, 111, 261, 481, 502
TfiI GAWTC 2 cut(s) 466, 508
Tru1I TTAA 2 cut(s) 102, 252
Tru9I TTAA 2 cut(s) 102, 252
TscAI CASTG 3 cut(s) 26, 99, 229
TspDTI ATGAA 2 cut(s) 17, 494
TspRI CASTG 3 cut(s) 26, 99, 229
XapI RAATTY 3 cut(s) 82, 481, 502
XmnI GAANNNNTTC 1 cut(s) 485
XspI CTAG 2 cut(s) 15, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.