Rmu_sc0029645.1_g000001
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029645.1
OG0008917
Physical Location & Seq
Forward (+)
1189 .. 1647
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029645.1_g000001.1.cds

Sequence Viewer

Length: 459 bp
atgtatacatttgatgcacagaagacttttaagccaaagattgattatttgaaatcagttgggttttcggaacttgacattgcaagggttttatccagtgagccttatattctcacaaggagccttaaaaatcaaattgctccaagtgttgaaacgcttaggcgagttcttggctgtgatgatgatgttgtgaaggttgtaaagaaatgctatcggatacttgaaaaatctttagagaaggtgcttgagccaaatatagatatattgaggagccatggtgtgcctgaatcacttattttgaaattttttgtggatcatccacctgcattgcttctaagtccatatcaagttagtgagggtattggttttgttaaaagtttaggtttcagtcccaataatctgaagtttcttctagctctgcattctgcggcggtgatgagtaaggcactctgggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

152

Amino Acids

17.12

Weight (kDa)

8.83

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 428, 431
AclWI GGATC 1 cut(s) 321
AcsI RAATTY 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 422
AgsI TTSAA 4 cut(s) 52, 152, 224, 301
AluBI AGCT 1 cut(s) 416
AluI AGCT 1 cut(s) 416
AlwI GGATC 1 cut(s) 321
ApoI RAATTY 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 445
BbsI GAAGAC 1 cut(s) 29
BciVI GTATCC 1 cut(s) 210
BfaI CTAG 1 cut(s) 413
BfuAI ACCTGC 1 cut(s) 331
BfuI GTATCC 1 cut(s) 210
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
BmiI GGNNCC 2 cut(s) 122, 272
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bse1I ACTGG 1 cut(s) 96
Bse3DI GCAATG 2 cut(s) 78, 326
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 1 cut(s) 316
BseMI GCAATG 2 cut(s) 78, 326
BseNI ACTGG 1 cut(s) 96
BseRI GAGGAG 1 cut(s) 283
BslFI GGGAC 1 cut(s) 375
BsmFI GGGAC 1 cut(s) 375
BsmI GAATGC 1 cut(s) 421
Bsp143I GATC 1 cut(s) 313
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 2 cut(s) 428, 431
BspLI GGNNCC 2 cut(s) 122, 272
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 1 cut(s) 321
BsrDI GCAATG 2 cut(s) 78, 326
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 1 cut(s) 313
BssNAI GTATAC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 274
Bst1107I GTATAC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 158, 335
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 1 cut(s) 316
BstMBI GATC 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 29
BstZ17I GTATAC 1 cut(s) 6
BsuI GTATCC 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 103
BveI ACCTGC 1 cut(s) 331
CspCI CAANNNNNGTGG 2 cut(s) 309, 344
CviAII CATG 1 cut(s) 275
CviJI RGCY 7 cut(s) 34, 103, 123, 174, 250, 273, 416
CviKI_1 RGCY 7 cut(s) 34, 103, 123, 174, 250, 273, 416
DdeI CTNAG 2 cut(s) 158, 335
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 422
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 1 cut(s) 278
FaiI YATR 6 cut(s) 6, 108, 257, 263, 276, 343
FaqI GGGAC 1 cut(s) 375
FatI CATG 1 cut(s) 274
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 429
FspBI CTAG 1 cut(s) 413
GluI GCNGC 1 cut(s) 429
Hin1II CATG 1 cut(s) 278
HinfI GANTC 1 cut(s) 287
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 70, 216, 402
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 187, 232
HpyCH4V TGCA 4 cut(s) 17, 83, 326, 421
HpyF3I CTNAG 2 cut(s) 158, 335
Hsp92II CATG 1 cut(s) 278
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 3 cut(s) 120, 145, 270
LpnPI CCDG 4 cut(s) 109, 297, 336, 436
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 413
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 2 cut(s) 34, 401
MluCI AATT 2 cut(s) 135, 302
MnlI CCTC 2 cut(s) 261, 349
MseI TTAA 3 cut(s) 30, 126, 372
Mva1269I GAATGC 1 cut(s) 421
NcoI CCATGG 1 cut(s) 274
NdeII GATC 1 cut(s) 313
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 2 cut(s) 122, 272
PaqCI CACCTGC 1 cut(s) 331
PctI GAATGC 1 cut(s) 421
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 430
PspN4I GGNNCC 2 cut(s) 122, 272
SaqAI TTAA 3 cut(s) 30, 126, 372
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 1 cut(s) 313
SetI ASST 5 cut(s) 198, 243, 325, 385, 418
SfaNI GCATC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 2 cut(s) 135, 302
SsiI CCGC 2 cut(s) 428, 431
SspMI CTAG 1 cut(s) 413
StyI CCWWGG 1 cut(s) 274
TasI AATT 2 cut(s) 135, 302
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 3 cut(s) 30, 126, 372
Tru9I TTAA 3 cut(s) 30, 126, 372
TscAI CASTG 1 cut(s) 103
TspRI CASTG 1 cut(s) 103
XapI RAATTY 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.