Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008917

Physical Location & Seq

Genomic Coordinates Forward (+)

4581618 .. 4583639

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGCTTCGTTTACTCCGCAAAAACCTAAAGCAGAGACCTTTACCATTCACCCATGTCAACTTGTTCTCAACCTCAACCCCAAAACCCATCTCAAAACCCTCCAATTCCTCAGACCCAAAATCATTTACAGTCTCTTACCTCAGAAAATCATGTGGGTTTTCCTTAGAATCCGCAGTCTCAGCTGCCCAGAAGCTTCAGATTGAACCCAAACACAGCCCTGACTCGGTTCTGAGCTTGTTCAAAACCCATGGATTGAACCAAACCCAGATCAGGAACATTATATCTAAACGCCCCATGTTGCTTTTGGCTGATTTCGATGGAAAAATTAGGCCTAATTTGGAGTTGCTAAACTCCTTGGGGCTTTCAGGGACTAGCCTTGCCCAAGTGATTCTCAAAGAGCCAACTGTGCTTGAGAGTGATGCAAAATCTGTGCTCGAGTGTTTTAGAAGTCATGGTTTTAGTGAAGAGGAGATATTAACTCTCACTATGAAGCTACCTACATTGTATACATATGATGCAGAGAAGAAGATTAAGCCAAAGTTGGAGTTTTTGAAGTCAGTTGGGTTTTCGGAACTTGACATTGCGAGGGTTTTATCCAGTGAGCCTTATATTCTTACTAGGAGCCTTGAAAACCAAATCATTCCGAGTATTGAAATTCTTAGGCGAGTGCTTGGTAGTGAAGAGGATGTTGTGAAGGTTGTAAAGAGATGCTACCGGATACTTGAGAAACCTTTGGACAAGCTGCTTGAGCAGAATATAGATGCATTGAGCACCAATGGAGTACCTCAATCACTTATTTCGAAACTTTTGGTGATTCATCCAGCAGTATTGCTTCTAAGCCCGTATCAAGTTTGTGAGGGTATTGCTTTTGTTAAAAGTTTAGGTTTCAATCCCAATAGTCTGAAATTTCTTCTCGCTGTGCGTTCTGTGGCGGGGATGAGCAAAGCACTCTGGGAGCAGAAACTGGAAACTTTTAGGAGTTGTGGCATGTCAAAAGATGACATTGATTCAGCATTCAAAGTGCAACCCATGTGTATGGTTGTTTCGGTGAAGAAGATTCAGAAAATGATGAATTTCTACCTGAGTAAAGTGCATTTGAATCCCTTGGCTATTCGCAAGAATCCAAAACTTTTATTTTATAGCCTGGAGAAGAGGGTTATTCCTAGGTGTTCAGTTCTGCAACTTCTATTGTCTCATGACTTGATAAGGGAAGATAGTAATTATTTTGTTCATGTTATCAGAATGAATGAGGAGGCTTTCAAGGAGAAGATAATAAGCAAGTATAAAGATGTGGTTCCAGATGTTATCAAGGCACACAAAGGTATGATAGAATTTGAAGGGTTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

450

Amino Acids

50.81

Weight (kDa)

9.46

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	77 - 140	1.6e-09	mTERF
mTERF	PF02536	145 - 304	5.2e-22	mTERF
mTERF	PF02536	313 - 420	3.6e-12	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64950
fragaria_vesca	FvH4_5g07880
malus_domestica	MD02G1127600.v1.1
prunus_persica	Prupe.2G049400_v2.0.a1 Prupe.5G155900_v2.0.a1 Prupe.5G155900_v2.0.a1 Prupe.6G175800_v2.0.a1
pyrus_communis	pycom02g09970 pycom06g13440
rosa_chinensis	RchiOBHm_Chr7g0190571
rosa_laevigata	RLG00000004514
rosa_multiflora	Rmu_sc0029645.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264500
rosa_rugosa	Rorug06G0505400
rosa_samantha	Rh7AG111900 Rh7BG114700 Rh7CG116600 Rh7CG116700 Rh7CG116800 Rh7DG115800 Rh7DG115900
rosa_wichuraiana	Rw7G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	506
AciI	CCGC	3 cut(s)	16, 171, 932
AcsI	RAATTY	4 cut(s)	654, 905, 1072, 1331
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	1 cut(s)	783
AfiI	CCNNNNNNNGG	2 cut(s)	223, 270
AjnI	CCWGG	1 cut(s)	1143
AluBI	AGCT	5 cut(s)	182, 193, 234, 493, 742
AluI	AGCT	5 cut(s)	182, 193, 234, 493, 742
Alw21I	GWGCWC	2 cut(s)	435, 773
Alw26I	GTCTC	4 cut(s)	28, 136, 181, 1197
AlwNI	CAGNNNCTG	1 cut(s)	964
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	182, 742
ApoI	RAATTY	4 cut(s)	654, 905, 1072, 1331
AspA2I	CCTAGG	1 cut(s)	1163
AsuHPI	GGTGA	3 cut(s)	40, 823, 1060
AsuII	TTCGAA	1 cut(s)	800
AvaI	CYCGRG	1 cut(s)	434
AvrII	CCTAGG	1 cut(s)	1163
Bbv12I	GWGCWC	2 cut(s)	435, 773
BbvI	GCAGC	2 cut(s)	169, 729
BccI	CCATC	2 cut(s)	95, 311
BciT130I	CCWGG	1 cut(s)	1145
BciVI	GTATCC	1 cut(s)	711
BcoDI	GTCTC	4 cut(s)	28, 136, 181, 1197
BfaI	CTAG	3 cut(s)	372, 618, 1164
BfuI	GTATCC	1 cut(s)	711
BisI	GCNGC	2 cut(s)	183, 743
BlnI	CCTAGG	1 cut(s)	1163
BlsI	GCNGC	2 cut(s)	184, 744
Bme1390I	CCNGG	1 cut(s)	1145
BmeT110I	CYCGRG	1 cut(s)	434
BmiI	GGNNCC	2 cut(s)	623, 1296
BmrFI	CCNGG	1 cut(s)	1145
BmsI	GCATC	4 cut(s)	409, 505, 698, 751
BpmI	CTGGAG	1 cut(s)	1166
Bpu14I	TTCGAA	1 cut(s)	800
BpuEI	CTTGAG	3 cut(s)	431, 743, 767
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	4 cut(s)	247, 354, 1104, 1163
BsaWI	WCCGGW	1 cut(s)	714
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 270
Bse1I	ACTGG	2 cut(s)	597, 969
Bse3DI	GCAATG	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	1145
BseDI	CCNNGG	4 cut(s)	247, 354, 1104, 1163
BseGI	GGATG	3 cut(s)	691, 817, 942
BseLI	CCNNNNNNNGG	2 cut(s)	223, 270
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	5 cut(s)	123, 154, 192, 221, 1073
BseNI	ACTGG	2 cut(s)	597, 969
BseRI	GAGGAG	2 cut(s)	482, 1265
BseXI	GCAGC	2 cut(s)	169, 729
BshFI	GGCC	1 cut(s)	331
BsiHKAI	GWGCWC	2 cut(s)	435, 773
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	715
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	223, 270
BsmAI	GTCTC	4 cut(s)	28, 136, 181, 1197
BsmFI	GGGAC	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	1013
BsnI	GGCC	1 cut(s)	331
Bso31I	GGTCTC	1 cut(s)	28
BsoBI	CYCGRG	1 cut(s)	434
Bsp119I	TTCGAA	1 cut(s)	800
Bsp1286I	GDGCHC	2 cut(s)	435, 773
Bsp143I	GATC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	3 cut(s)	16, 171, 932
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	5 cut(s)	122, 153, 191, 222, 1074
BspHI	TCATGA	2 cut(s)	1195, 1346
BspLI	GGNNCC	2 cut(s)	623, 1296
BspT104I	TTCGAA	1 cut(s)	800
BspTNI	GGTCTC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	579
BsrI	ACTGG	2 cut(s)	597, 969
BssECI	CCNNGG	4 cut(s)	247, 354, 1104, 1163
BssMI	GATC	1 cut(s)	267
BssNAI	GTATAC	1 cut(s)	507
BssT1I	CCWWGG	4 cut(s)	247, 354, 1104, 1163
Bst1107I	GTATAC	1 cut(s)	507
Bst2UI	CCWGG	1 cut(s)	1145
Bst4CI	ACNGT	2 cut(s)	130, 406
Bst6I	CTCTTC	3 cut(s)	459, 675, 1145
BstBI	TTCGAA	1 cut(s)	800
BstDEI	CTNAG	8 cut(s)	109, 140, 163, 178, 230, 659, 836, 1082
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	3 cut(s)	691, 817, 942
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	4 cut(s)	28, 136, 181, 1197
BstMBI	GATC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 406, 748
BstNI	CCWGG	1 cut(s)	1145
BstNSI	RCATGY	1 cut(s)	991
BstSCI	CCNGG	1 cut(s)	1143
BstV1I	GCAGC	2 cut(s)	169, 729
BstXI	CCANNNNNNTGG	1 cut(s)	1036
BstZ17I	GTATAC	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	711
BsuRI	GGCC	1 cut(s)	331
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	3 cut(s)	691, 817, 942
BtsIMutI	CAGTG	1 cut(s)	604
CaiI	CAGNNNCTG	1 cut(s)	964
CciI	TCATGA	2 cut(s)	1195, 1346
Csp6I	GTAC	1 cut(s)	782
CviQI	GTAC	1 cut(s)	782
DdeI	CTNAG	8 cut(s)	109, 140, 163, 178, 230, 659, 836, 1082
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
Eam1104I	CTCTTC	3 cut(s)	459, 675, 1145
EarI	CTCTTC	3 cut(s)	459, 675, 1145
Eco130I	CCWWGG	4 cut(s)	247, 354, 1104, 1163
Eco147I	AGGCCT	1 cut(s)	331
Eco31I	GGTCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	1143
EcoT14I	CCWWGG	4 cut(s)	247, 354, 1104, 1163
EcoT22I	ATGCAT	1 cut(s)	766
ErhI	CCWWGG	4 cut(s)	247, 354, 1104, 1163
FaqI	GGGAC	1 cut(s)	382
FauI	CCCGC	1 cut(s)	925
FauNDI	CATATG	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	2 cut(s)	183, 743
FokI	GGATG	3 cut(s)	698, 804, 949
Fsp4HI	GCNGC	2 cut(s)	183, 743
FspBI	CTAG	3 cut(s)	372, 618, 1164
GluI	GCNGC	2 cut(s)	183, 743
GsuI	CTGGAG	1 cut(s)	1166
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	1 cut(s)	715
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	8 cut(s)	167, 221, 388, 814, 1007, 1057, 1099, 1120
HpaII	CCGG	1 cut(s)	715
HphI	GGTGA	3 cut(s)	40, 823, 1060
Hpy166II	GTNNAC	3 cut(s)	11, 58, 507
Hpy188I	TCNGA	9 cut(s)	112, 143, 198, 231, 571, 645, 903, 1062, 1241
Hpy188III	TCNNGA	4 cut(s)	271, 1196, 1298, 1347
Hpy8I	GTNNAC	3 cut(s)	11, 58, 507
HpyAV	CCTTC	2 cut(s)	688, 1331
HpyCH4III	ACNGT	2 cut(s)	130, 406
HpyCH4V	TGCA	6 cut(s)	422, 518, 764, 1024, 1093, 1180
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 406, 748
HpyF3I	CTNAG	8 cut(s)	109, 140, 163, 178, 230, 659, 836, 1082
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	621, 955
Lsp1109I	GCAGC	2 cut(s)	169, 729
LweI	GCATC	4 cut(s)	409, 505, 698, 751
MaeI	CTAG	3 cut(s)	372, 618, 1164
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MhlI	GDGCHC	2 cut(s)	435, 773
MluCI	AATT	8 cut(s)	103, 324, 334, 654, 905, 1072, 1219, 1331
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	522
Mph1103I	ATGCAT	1 cut(s)	766
MseI	TTAA	3 cut(s)	476, 531, 873
MslI	CAYNNNNRTG	1 cut(s)	1034
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	1 cut(s)	715
MspR9I	CCNGG	1 cut(s)	1145
Mva1269I	GAATGC	1 cut(s)	1013
MvaI	CCWGG	1 cut(s)	1145
MwoI	GCNNNNNNNGC	3 cut(s)	179, 406, 748
NcoI	CCATGG	1 cut(s)	247
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	1 cut(s)	267
NlaIV	GGNNCC	2 cut(s)	623, 1296
NsiI	ATGCAT	1 cut(s)	766
NspI	RCATGY	1 cut(s)	991
NspV	TTCGAA	1 cut(s)	800
PaeR7I	CTCGAG	1 cut(s)	434
PagI	TCATGA	2 cut(s)	1195, 1346
PceI	AGGCCT	1 cut(s)	331
PctI	GAATGC	1 cut(s)	1013
PfeI	GAWTC	7 cut(s)	167, 388, 814, 1007, 1057, 1099, 1120
PkrI	GCNGC	2 cut(s)	184, 744
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	1143
PspGI	CCWGG	1 cut(s)	1143
PspN4I	GGNNCC	2 cut(s)	623, 1296
PspXI	VCTCGAGB	1 cut(s)	434
PstNI	CAGNNNCTG	1 cut(s)	964
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	783
RsaNI	GTAC	1 cut(s)	782
RseI	CAYNNNNRTG	1 cut(s)	1034
SaqAI	TTAA	3 cut(s)	476, 531, 873
SatI	GCNGC	2 cut(s)	183, 743
Sau3AI	GATC	1 cut(s)	267
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	1145
SduI	GDGCHC	2 cut(s)	435, 773
SfaNI	GCATC	4 cut(s)	409, 505, 698, 751
Sfr274I	CTCGAG	1 cut(s)	434
SfuI	TTCGAA	1 cut(s)	800
SlaI	CTCGAG	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	1034
SmlI	CTYRAG	4 cut(s)	410, 434, 722, 746
SmoI	CTYRAG	4 cut(s)	410, 434, 722, 746
Sse9I	AATT	8 cut(s)	103, 324, 334, 654, 905, 1072, 1219, 1331
SseBI	AGGCCT	1 cut(s)	331
SsiI	CCGC	3 cut(s)	16, 171, 932
SspMI	CTAG	3 cut(s)	372, 618, 1164
StuI	AGGCCT	1 cut(s)	331
StyD4I	CCNGG	1 cut(s)	1143
StyI	CCWWGG	4 cut(s)	247, 354, 1104, 1163
TaaI	ACNGT	2 cut(s)	130, 406
TaqI	TCGA	3 cut(s)	315, 435, 800
TasI	AATT	8 cut(s)	103, 324, 334, 654, 905, 1072, 1219, 1331
TfiI	GAWTC	7 cut(s)	167, 388, 814, 1007, 1057, 1099, 1120
Tru1I	TTAA	3 cut(s)	476, 531, 873
Tru9I	TTAA	3 cut(s)	476, 531, 873
TscAI	CASTG	1 cut(s)	604
TseI	GCWGC	2 cut(s)	182, 742
TspDTI	ATGAA	6 cut(s)	503, 806, 1085, 1220, 1259, 1335
TspRI	CASTG	1 cut(s)	604
XapI	RAATTY	4 cut(s)	654, 905, 1072, 1331
XceI	RCATGY	1 cut(s)	991
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XhoI	CTCGAG	1 cut(s)	434
XmaJI	CCTAGG	1 cut(s)	1163
XmiI	GTMKAC	1 cut(s)	506
XspI	CTAG	3 cut(s)	372, 618, 1164
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.