Rh7DG115900
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008917
Physical Location & Seq
Reverse (-)
9798574 .. 9799607
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG115900.1

Sequence Viewer

Length: 456 bp
ATGAACCTCCGCCATAGTCAGAGCCACTTGACCAAGACCAGAGAGGGAAAAGGCCGATGCTTGAAGCACATCCGCTTTTCAAATTTCAATCCAGTGAGCCTTATATTCTCACAAGGAGCCTTAAAAAATCAAATTGCTCCAAGTGTTGAAACGCTTAGGCGAGTTCTTGGCTGTGATGATGATGTTGTGAAGGTTGTAAAGAAATGCTATCGGATACTTGAAAAATCTTTAGAGAAGGTGCTTGAGCCAAATATAGATATATTGAGGAGCCATGGTGTGCCCGAATCACTTATTTTGAAATTTTTTGTGGATCATCCACCAGCATTGCTTCTAAGTCCATATCAAGTTAGTGAGGGTATTGGTTTTGTTAAAAGTTTAGGTTTCAGTCCCAATAATCTGAAGTTTCTTCTAGCTCTGCATTCTGCGGCGGTGATGAGTAAGGCACTCTGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

151

Amino Acids

16.96

Weight (kDa)

9.64

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 40 - 142 3.4e-08 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 10, 73, 425, 428
AclWI GGATC 1 cut(s) 318
AcsI RAATTY 2 cut(s) 82, 299
AcuI CTGAAG 1 cut(s) 419
AgsI TTSAA 6 cut(s) 64, 81, 88, 149, 221, 298
AluBI AGCT 1 cut(s) 413
AluI AGCT 1 cut(s) 413
AlwI GGATC 1 cut(s) 318
AoxI GGCC 1 cut(s) 52
ApoI RAATTY 2 cut(s) 82, 299
AsuHPI GGTGA 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 282
BciVI GTATCC 1 cut(s) 207
BfaI CTAG 1 cut(s) 410
BfuI GTATCC 1 cut(s) 207
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
BmiI GGNNCC 2 cut(s) 118, 269
BmsI GCATC 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bse1I ACTGG 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 323
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 2 cut(s) 69, 313
BseMI GCAATG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 280
BseSI GKGCMC 1 cut(s) 282
BshFI GGCC 1 cut(s) 54
BslFI GGGAC 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 372
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 310
Bsp19I CCATGG 1 cut(s) 271
BspACI CCGC 4 cut(s) 10, 73, 425, 428
BspANI GGCC 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 118, 269
BspPI GGATC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 323
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 271
BstDEI CTNAG 2 cut(s) 155, 332
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 2 cut(s) 69, 313
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 282
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 2 cut(s) 69, 313
BtsIMutI CAGTG 1 cut(s) 99
CspCI CAANNNNNGTGG 2 cut(s) 306, 341
CviAII CATG 1 cut(s) 272
CviJI RGCY 8 cut(s) 24, 54, 99, 119, 171, 247, 270, 413
CviKI_1 RGCY 8 cut(s) 24, 54, 99, 119, 171, 247, 270, 413
DdeI CTNAG 2 cut(s) 155, 332
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 419
EcoT14I CCWWGG 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 1 cut(s) 275
FaiI YATR 6 cut(s) 15, 104, 254, 260, 273, 340
FaqI GGGAC 1 cut(s) 372
FatI CATG 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 2 cut(s) 56, 300
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 1 cut(s) 410
GluI GCNGC 1 cut(s) 426
HaeIII GGCC 1 cut(s) 54
Hin1II CATG 1 cut(s) 275
HinfI GANTC 1 cut(s) 284
HphI GGTGA 1 cut(s) 442
Hpy188I TCNGA 3 cut(s) 21, 213, 399
HpyAV CCTTC 2 cut(s) 184, 229
HpyCH4V TGCA 1 cut(s) 418
HpyF3I CTNAG 2 cut(s) 155, 332
Hsp92II CATG 1 cut(s) 275
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 3 cut(s) 116, 142, 267
LpnPI CCDG 4 cut(s) 52, 105, 333, 433
LweI GCATC 1 cut(s) 47
MaeI CTAG 1 cut(s) 410
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 1 cut(s) 398
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 3 cut(s) 82, 132, 299
MnlI CCTC 4 cut(s) 17, 37, 258, 346
MseI TTAA 2 cut(s) 122, 369
Mva1269I GAATGC 1 cut(s) 418
NcoI CCATGG 1 cut(s) 271
NdeII GATC 1 cut(s) 310
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 2 cut(s) 118, 269
PctI GAATGC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 284
PkrI GCNGC 1 cut(s) 427
PspN4I GGNNCC 2 cut(s) 118, 269
SaqAI TTAA 2 cut(s) 122, 369
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 1 cut(s) 310
SduI GDGCHC 1 cut(s) 282
SetI ASST 5 cut(s) 9, 195, 240, 382, 415
SfaNI GCATC 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 3 cut(s) 82, 132, 299
SsiI CCGC 4 cut(s) 10, 73, 425, 428
SspMI CTAG 1 cut(s) 410
StyI CCWWGG 1 cut(s) 271
TasI AATT 3 cut(s) 82, 132, 299
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 2 cut(s) 122, 369
Tru9I TTAA 2 cut(s) 122, 369
TscAI CASTG 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 99
XapI RAATTY 2 cut(s) 82, 299
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.