Rroxscaffold_3G00264500
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008917
Physical Location & Seq
Forward (+)
58130245 .. 58130977
733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264500.1

Sequence Viewer

Length: 639 bp
ATGCCTACATGTTCTCCCAAACCCACAAATTCCTCAGACCCACAATCGTTTACAGTCTCTTACATCCAAAATTCATGTGGGCTGTCCTTAGACTCCGCCATTTCAGCTGCCCAGAAGCGTCAGATTGAATCCAAACACACCCCTGACTCGGTTCTGAGCTTATTCAGAACCCACGGATTGGATCAAACCCACATCAGGAACATAATATCTAAACGTCCATTGTTGCTTTTGGCTGGTTTAGATGGAAAAATTAGTCCCAATTTGGAGTTGCTGAACTCCTTGGGGTTGCTCAAGTGGTTCTTAAAGACCCAATTGTGCTTGAGAAAGACTTTTAAGCCAAAGATTGATTATTTGAAATCAGTTGGGTTTTCGGAACTTGACATTGCAAGGGTTTTATCCAGTGAGCCTTATATTCTCACAAGGAGCCTTAAAAATCAAATTGCTCCGAGTGTTGAAATGCTTATGCGAGTTCTTGGCTGTGATAAGGATGATGTGAAGGTTGTAAAGAAATGCTATCGGATACTTGAAATTTTTTTGGAGAAGGTGCTTGAGCCGAATATAGATATATTGGGGAGCCATGGTGTGCCTGAATCACTTATTTTGAAATTTTTTTGGATCATCCACCAGCATTGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

212

Amino Acids

23.93

Weight (kDa)

9.12

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 108 - 198 5.2e-10 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 178
AciI CCGC 1 cut(s) 96
AclWI GGATC 2 cut(s) 189, 623
AcsI RAATTY 4 cut(s) 28, 70, 528, 605
AfiI CCNNNNNNNGG 3 cut(s) 148, 178, 195
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 5 cut(s) 128, 355, 455, 527, 604
AluBI AGCT 2 cut(s) 107, 159
AluI AGCT 2 cut(s) 107, 159
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 2 cut(s) 189, 623
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 4 cut(s) 28, 70, 528, 605
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 236
BciVI GTATCC 1 cut(s) 513
BcoDI GTCTC 1 cut(s) 61
BfuI GTATCC 1 cut(s) 513
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmiI GGNNCC 2 cut(s) 425, 575
BpuEI CTTGAG 3 cut(s) 275, 340, 569
BsaJI CCNNGG 3 cut(s) 172, 279, 577
BsaXI ACNNNNNCTCC 3 cut(s) 28, 565, 595
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 178, 195
Bse1I ACTGG 1 cut(s) 399
Bse3DI GCAATG 2 cut(s) 381, 628
BseDI CCNNGG 3 cut(s) 172, 279, 577
BseGI GGATG 3 cut(s) 63, 493, 618
BseLI CCNNNNNNNGG 3 cut(s) 148, 178, 195
BseMI GCAATG 2 cut(s) 381, 628
BseMII CTCAG 2 cut(s) 48, 146
BseNI ACTGG 1 cut(s) 399
BseXI GCAGC 1 cut(s) 94
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 3 cut(s) 148, 178, 195
BsmAI GTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 181, 615
Bsp19I CCATGG 1 cut(s) 577
BspACI CCGC 1 cut(s) 96
BspCNI CTCAG 2 cut(s) 47, 147
BspLI GGNNCC 2 cut(s) 425, 575
BspPI GGATC 2 cut(s) 189, 623
BsrDI GCAATG 2 cut(s) 381, 628
BsrI ACTGG 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 172, 279, 577
BssMI GATC 2 cut(s) 181, 615
BssT1I CCWWGG 2 cut(s) 279, 577
Bst4CI ACNGT 1 cut(s) 55
BstDEI CTNAG 3 cut(s) 34, 88, 155
BstDSI CCRYGG 2 cut(s) 172, 577
BstF5I GGATG 3 cut(s) 63, 493, 618
BstKTI GATC 2 cut(s) 184, 618
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 2 cut(s) 181, 615
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 94
BsuI GTATCC 1 cut(s) 513
BtgI CCRYGG 2 cut(s) 172, 577
BtsCI GGATG 3 cut(s) 63, 493, 618
BtsIMutI CAGTG 1 cut(s) 406
CseI GACGC 1 cut(s) 107
CspCI CAANNNNNGTGG 1 cut(s) 611
CviAII CATG 3 cut(s) 9, 75, 578
DdeI CTNAG 3 cut(s) 34, 88, 155
DpnI GATC 2 cut(s) 183, 617
DpnII GATC 2 cut(s) 181, 615
EciI GGCGGA 1 cut(s) 85
Eco130I CCWWGG 2 cut(s) 279, 577
EcoT14I CCWWGG 2 cut(s) 279, 577
ErhI CCWWGG 2 cut(s) 279, 577
FaeI CATG 3 cut(s) 12, 78, 581
FaiI YATR 8 cut(s) 10, 76, 203, 411, 464, 560, 566, 579
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FaqI GGGAC 1 cut(s) 240
FatI CATG 3 cut(s) 8, 74, 577
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 3 cut(s) 50, 500, 605
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
HgaI GACGC 1 cut(s) 107
Hin1II CATG 3 cut(s) 12, 78, 581
HinfI GANTC 4 cut(s) 92, 128, 146, 590
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 7 cut(s) 37, 123, 156, 167, 373, 447, 519
Hpy188III TCNNGA 1 cut(s) 196
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 2 cut(s) 490, 535
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 1 cut(s) 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 3 cut(s) 34, 88, 155
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 3 cut(s) 12, 78, 581
Kzo9I GATC 2 cut(s) 181, 615
LmnI GCTCC 3 cut(s) 423, 448, 573
LpnPI CCDG 6 cut(s) 125, 156, 181, 219, 412, 600
Lsp1109I GCAGC 1 cut(s) 94
MaeII ACGT 1 cut(s) 214
MalI GATC 2 cut(s) 183, 617
MboI GATC 2 cut(s) 181, 615
MfeI CAATTG 1 cut(s) 311
MluCI AATT 8 cut(s) 28, 70, 249, 259, 311, 438, 528, 605
MlyI GAGTC 2 cut(s) 86, 140
MnlI CCTC 1 cut(s) 43
MseI TTAA 3 cut(s) 302, 333, 429
MspA1I CMGCKG 1 cut(s) 107
MunI CAATTG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 104
NcoI CCATGG 1 cut(s) 577
NdeII GATC 2 cut(s) 181, 615
NlaIII CATG 3 cut(s) 12, 78, 581
NlaIV GGNNCC 2 cut(s) 425, 575
NspI RCATGY 1 cut(s) 12
PciI ACATGT 1 cut(s) 8
PfeI GAWTC 2 cut(s) 128, 590
PflMI CCANNNNNTGG 1 cut(s) 178
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 2 cut(s) 86, 140
PpsI GAGTC 2 cut(s) 86, 140
PscI ACATGT 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 425, 575
PvuII CAGCTG 1 cut(s) 107
SaqAI TTAA 3 cut(s) 302, 333, 429
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 2 cut(s) 181, 615
SchI GAGTC 2 cut(s) 86, 140
SetI ASST 5 cut(s) 109, 161, 217, 501, 546
SmlI CTYRAG 3 cut(s) 290, 319, 548
SmoI CTYRAG 3 cut(s) 290, 319, 548
Sse9I AATT 8 cut(s) 28, 70, 249, 259, 311, 438, 528, 605
SsiI CCGC 1 cut(s) 96
StyI CCWWGG 2 cut(s) 279, 577
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 217
TasI AATT 8 cut(s) 28, 70, 249, 259, 311, 438, 528, 605
TfiI GAWTC 2 cut(s) 128, 590
Tru1I TTAA 3 cut(s) 302, 333, 429
Tru9I TTAA 3 cut(s) 302, 333, 429
TscAI CASTG 1 cut(s) 406
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 406
Van91I CCANNNNNTGG 1 cut(s) 178
XapI RAATTY 4 cut(s) 28, 70, 528, 605
XceI RCATGY 1 cut(s) 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.