Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008917

Physical Location & Seq

Genomic Coordinates Reverse (-)

5664325 .. 5666286

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G049400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCTAACACTGCCCTCAGAAATCTGCTTTCTTTAGTACAAAAACGCCTTCTTGCAACATTACCAACGCCTACAGCTGCATTATGTTCATCTTTTACAGTTGAGTACCTGGTGAAGTCATGCGGGCTTCCTTTAGAATCTGCAATCTCAGCCTCCAAGAAGCTCCAGATTGATAAGAAGCAAACACATCGGATAGATTCTATGCTCAAATTCTTGAAATCTAACGGATTTGATGATGCCCAAATCGCCAAATTGATCACCAAGCGCCCCACAATCCTCCATTACAAGGTACTCAGCAATCTGGAGCCCAAATTCAACTTTCTCATTGAAAATGGCTTTGTGGGTCAGAATCTGCCAGAGCTCGTTTTATTGAATCCAGTCATTTTGACTCGGAGTTTGGATTCTCACATAAAACCAGCAGTTCAATTTCTCAAGAAATTGCTTTCAACCAATGATATGTTGGCGGCGGCCAAGCGCTCTTCATGGCTGTTAAACATGGATAGTGTGGGTACAATTCAACCCAATGTGGCCCTTTTGCAGAGTGAAGGTGTTCCCTTAGATGTTATAACAAAAATGATATTGTTTCAGCCAAGGACTGTAATGCAAAATGTTGACAGAATGGCTTATGCAGTTAGAACAATAAAAGATTTGGGCATTGACCCGACTGGTCCGATGTTTGTCCGGGCTGTTCGAGTTATGATCTCTATGAAAGAGTCAACATGGAAAAGGAAAATTGAATTTTTTAAGAGTTACGGGTGGTCTGAAGATGTTGTTCTGTCAGTTTTTAAGCGCCAACCATTTTGTTTAGCTTGTTCGGAGGAGAAACTTGGGAGAGTCATGGATTTCTTTCTGAACACTGTGAAGTTGGAACCGGAGACTATGATTGCCAATCCCATGCTTCTTATGCATGGTTTTGAGAAAACAGTTCTACCAAGGTATAATGTTTTCAAGATTTTGGTTTCTAAGGAGCTGATTAATAGGGACAACAAGAGGCTGTGTTGGTTGATCACACAAAGTGAGAGGAGATTTTTGGATTATTATGTTCTTAAGTATTTGAATGAAGTCCCAGACCTACTGGAGATATACCATAGTTCTAAGGAAGAGACAATAGAGATTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

374

Amino Acids

42.68

Weight (kDa)

9.42

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64950
fragaria_vesca	FvH4_5g07880
malus_domestica	MD02G1127600.v1.1
prunus_persica	Prupe.2G049400_v2.0.a1 Prupe.5G155900_v2.0.a1 Prupe.5G155900_v2.0.a1 Prupe.6G175800_v2.0.a1
pyrus_communis	pycom02g09970 pycom06g13440
rosa_chinensis	RchiOBHm_Chr7g0190571
rosa_laevigata	RLG00000004514
rosa_multiflora	Rmu_sc0029645.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264500
rosa_rugosa	Rorug06G0505400
rosa_samantha	Rh7AG111900 Rh7BG114700 Rh7CG116600 Rh7CG116700 Rh7CG116800 Rh7DG115800 Rh7DG115900
rosa_wichuraiana	Rw7G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	566
AciI	CCGC	3 cut(s)	123, 464, 467
AcoI	YGGCCR	1 cut(s)	468
AcsI	RAATTY	3 cut(s)	209, 311, 737
AcuI	CTGAAG	1 cut(s)	783
AdeI	CACNNNGTG	1 cut(s)	1016
AfaI	GTAC	4 cut(s)	39, 107, 291, 511
AfeI	AGCGCT	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	286
AflII	CTTAAG	1 cut(s)	1046
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	5 cut(s)	77, 163, 361, 809, 970
AluI	AGCT	5 cut(s)	77, 163, 361, 809, 970
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	869, 1097
AlwNI	CAGNNNCTG	1 cut(s)	352
Aor51HI	AGCGCT	1 cut(s)	476
AoxI	GGCC	2 cut(s)	468, 528
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	3 cut(s)	209, 311, 737
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
AseI	ATTAAT	1 cut(s)	975
Asp700I	GAANNNNTTC	1 cut(s)	549
AspLEI	GCGC	3 cut(s)	267, 477, 792
AspS9I	GGNCC	2 cut(s)	529, 668
AsuC2I	CCSGG	1 cut(s)	683
AsuHPI	GGTGA	2 cut(s)	124, 250
AvaII	GGWCC	1 cut(s)	668
BanII	GRGCYC	2 cut(s)	309, 363
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	64
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	2 cut(s)	255, 1005
BcnI	CCSGG	1 cut(s)	683
BcoDI	GTCTC	2 cut(s)	869, 1097
BfmI	CTRYAG	1 cut(s)	72
BfoI	RGCGCY	3 cut(s)	268, 478, 793
BfrI	CTTAAG	1 cut(s)	1046
BisI	GCNGC	3 cut(s)	78, 465, 468
BlsI	GCNGC	3 cut(s)	79, 466, 469
Bme1390I	CCNGG	2 cut(s)	110, 683
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	2 cut(s)	529, 668
BmiI	GGNNCC	2 cut(s)	306, 870
BmrFI	CCNGG	2 cut(s)	110, 683
BmsI	GCATC	1 cut(s)	226
BpmI	CTGGAG	3 cut(s)	149, 323, 1097
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	683
BsaJI	CCNNGG	2 cut(s)	590, 932
BsaWI	WCCGGW	1 cut(s)	871
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse1I	ACTGG	3 cut(s)	377, 670, 1080
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	590, 932
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	3 cut(s)	31, 162, 307
BseNI	ACTGG	3 cut(s)	377, 670, 1080
BseRI	GAGGAG	2 cut(s)	833, 1036
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	2 cut(s)	470, 530
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	682, 872
BslFI	GGGAC	2 cut(s)	995, 1049
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	2 cut(s)	869, 1097
BsmFI	GGGAC	2 cut(s)	995, 1049
BsnI	GGCC	2 cut(s)	470, 530
Bsp1286I	GDGCHC	2 cut(s)	309, 363
Bsp143I	GATC	3 cut(s)	255, 699, 1005
BspACI	CCGC	3 cut(s)	123, 464, 467
BspANI	GGCC	2 cut(s)	470, 530
BspCNI	CTCAG	3 cut(s)	30, 161, 306
BspLI	GGNNCC	2 cut(s)	306, 870
BspQI	GCTCTTC	1 cut(s)	484
BspTI	CTTAAG	1 cut(s)	1046
BsrI	ACTGG	3 cut(s)	377, 670, 1080
BssECI	CCNNGG	2 cut(s)	590, 932
BssMI	GATC	3 cut(s)	255, 699, 1005
BssT1I	CCWWGG	2 cut(s)	590, 932
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	4 cut(s)	100, 598, 859, 925
Bst6I	CTCTTC	2 cut(s)	484, 1095
BstAFI	CTTAAG	1 cut(s)	1046
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	7 cut(s)	17, 148, 293, 556, 963, 1095, 1119
BstH2I	RGCGCY	3 cut(s)	268, 478, 793
BstHHI	GCGC	3 cut(s)	267, 477, 792
BstKTI	GATC	3 cut(s)	258, 702, 1008
BstMAI	GTCTC	2 cut(s)	869, 1097
BstMBI	GATC	3 cut(s)	255, 699, 1005
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 149, 245, 904
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	108, 681
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	470, 530
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	9, 855
Cac8I	GCNNGC	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	352
CfoI	GCGC	3 cut(s)	267, 477, 792
Cfr13I	GGNCC	2 cut(s)	529, 668
CsiI	ACCWGGT	1 cut(s)	108
Csp6I	GTAC	4 cut(s)	38, 106, 290, 510
CviAII	CATG	7 cut(s)	120, 483, 496, 720, 838, 895, 908
CviQI	GTAC	4 cut(s)	38, 106, 290, 510
DdeI	CTNAG	7 cut(s)	17, 148, 293, 556, 963, 1095, 1119
DpnI	GATC	3 cut(s)	257, 701, 1007
DpnII	GATC	3 cut(s)	255, 699, 1005
DraIII	CACNNNGTG	1 cut(s)	1016
EaeI	YGGCCR	1 cut(s)	468
Eam1104I	CTCTTC	2 cut(s)	484, 1095
EarI	CTCTTC	2 cut(s)	484, 1095
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	2 cut(s)	590, 932
Eco24I	GRGCYC	2 cut(s)	309, 363
Eco47I	GGWCC	1 cut(s)	668
Eco47III	AGCGCT	1 cut(s)	476
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	783
EcoICRI	GAGCTC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	590, 932
EcoT22I	ATGCAT	1 cut(s)	909
EcoT38I	GRGCYC	2 cut(s)	309, 363
ErhI	CCWWGG	2 cut(s)	590, 932
FaeI	CATG	7 cut(s)	123, 486, 499, 723, 841, 898, 911
FaqI	GGGAC	2 cut(s)	995, 1049
FatI	CATG	7 cut(s)	119, 482, 495, 719, 837, 894, 907
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	2 cut(s)	255, 1005
Fnu4HI	GCNGC	3 cut(s)	78, 465, 468
FriOI	GRGCYC	2 cut(s)	309, 363
Fsp4HI	GCNGC	3 cut(s)	78, 465, 468
GlaI	GCGC	3 cut(s)	266, 476, 791
GluI	GCNGC	3 cut(s)	78, 465, 468
GsuI	CTGGAG	3 cut(s)	149, 323, 1097
HaeII	RGCGCY	3 cut(s)	268, 478, 793
HaeIII	GGCC	2 cut(s)	470, 530
HapII	CCGG	2 cut(s)	682, 872
HhaI	GCGC	3 cut(s)	267, 477, 792
Hin1II	CATG	7 cut(s)	123, 486, 499, 723, 841, 898, 911
Hin6I	GCGC	3 cut(s)	265, 475, 790
HinP1I	GCGC	3 cut(s)	265, 475, 790
HincII	GTYRAC	2 cut(s)	613, 717
HindII	GTYRAC	2 cut(s)	613, 717
HinfI	GANTC	9 cut(s)	137, 197, 349, 373, 388, 401, 713, 834, 1114
HpaII	CCGG	2 cut(s)	682, 872
HphI	GGTGA	2 cut(s)	124, 250
Hpy166II	GTNNAC	2 cut(s)	613, 717
Hpy188I	TCNGA	8 cut(s)	20, 192, 348, 393, 672, 763, 817, 852
Hpy188III	TCNNGA	5 cut(s)	166, 214, 302, 433, 949
Hpy8I	GTNNAC	2 cut(s)	613, 717
HpyAV	CCTTC	2 cut(s)	59, 539
HpyCH4III	ACNGT	4 cut(s)	100, 598, 859, 925
HpyCH4V	TGCA	7 cut(s)	56, 80, 143, 538, 604, 629, 907
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 149, 245, 904
HpyF3I	CTNAG	7 cut(s)	17, 148, 293, 556, 963, 1095, 1119
Hsp92II	CATG	7 cut(s)	123, 486, 499, 723, 841, 898, 911
HspAI	GCGC	3 cut(s)	265, 475, 790
Ksp22I	TGATCA	2 cut(s)	255, 1005
Kzo9I	GATC	3 cut(s)	255, 699, 1005
LguI	GCTCTTC	1 cut(s)	484
LmnI	GCTCC	3 cut(s)	168, 304, 967
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	1 cut(s)	226
MabI	ACCWGGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	749
MalI	GATC	3 cut(s)	257, 701, 1007
MboI	GATC	3 cut(s)	255, 699, 1005
MboII	GAAGA	3 cut(s)	471, 776, 1112
MhlI	GDGCHC	2 cut(s)	309, 363
MluCI	AATT	8 cut(s)	209, 251, 311, 425, 437, 513, 732, 737
MlyI	GAGTC	3 cut(s)	382, 722, 843
MmeI	TCCRAC	1 cut(s)	846
MnlI	CCTC	6 cut(s)	26, 163, 287, 811, 984, 1014
Mph1103I	ATGCAT	1 cut(s)	909
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	5 cut(s)	491, 744, 786, 975, 1047
MspA1I	CMGCKG	1 cut(s)	77
MspCI	CTTAAG	1 cut(s)	1046
MspI	CCGG	2 cut(s)	682, 872
MspR9I	CCNGG	2 cut(s)	110, 683
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	4 cut(s)	11, 149, 245, 904
NciI	CCSGG	1 cut(s)	683
NdeII	GATC	3 cut(s)	255, 699, 1005
NlaIII	CATG	7 cut(s)	123, 486, 499, 723, 841, 898, 911
NlaIV	GGNNCC	2 cut(s)	306, 870
NsiI	ATGCAT	1 cut(s)	909
PciSI	GCTCTTC	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	6 cut(s)	137, 197, 349, 373, 401, 1114
PkrI	GCNGC	3 cut(s)	79, 466, 469
PleI	GAGTC	3 cut(s)	382, 721, 842
PpsI	GAGTC	3 cut(s)	382, 721, 842
PshBI	ATTAAT	1 cut(s)	975
PsiI	TTATAA	1 cut(s)	566
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	306, 870
PspPI	GGNCC	2 cut(s)	529, 668
PstNI	CAGNNNCTG	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	4 cut(s)	39, 107, 291, 511
RsaNI	GTAC	4 cut(s)	38, 106, 290, 510
SacI	GAGCTC	1 cut(s)	363
SapI	GCTCTTC	1 cut(s)	484
SaqAI	TTAA	5 cut(s)	491, 744, 786, 975, 1047
SatI	GCNGC	3 cut(s)	78, 465, 468
Sau3AI	GATC	3 cut(s)	255, 699, 1005
Sau96I	GGNCC	2 cut(s)	529, 668
SchI	GAGTC	3 cut(s)	382, 722, 843
ScrFI	CCNGG	2 cut(s)	110, 683
SduI	GDGCHC	2 cut(s)	309, 363
SexAI	ACCWGGT	1 cut(s)	108
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	668
SmlI	CTYRAG	2 cut(s)	431, 1046
SmoI	CTYRAG	2 cut(s)	431, 1046
Sse9I	AATT	8 cut(s)	209, 251, 311, 425, 437, 513, 732, 737
SsiI	CCGC	3 cut(s)	123, 464, 467
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	108, 681
StyI	CCWWGG	2 cut(s)	590, 932
TaaI	ACNGT	4 cut(s)	100, 598, 859, 925
TaqI	TCGA	1 cut(s)	691
TasI	AATT	8 cut(s)	209, 251, 311, 425, 437, 513, 732, 737
TatI	WGTACW	1 cut(s)	37
TauI	GCSGC	2 cut(s)	467, 470
TfiI	GAWTC	6 cut(s)	137, 197, 349, 373, 401, 1114
Tru1I	TTAA	5 cut(s)	491, 744, 786, 975, 1047
Tru9I	TTAA	5 cut(s)	491, 744, 786, 975, 1047
TscAI	CASTG	2 cut(s)	16, 862
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	4 cut(s)	78, 471, 722, 1074
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	16, 862
Vha464I	CTTAAG	1 cut(s)	1046
VpaK11BI	GGWCC	1 cut(s)	668
VspI	ATTAAT	1 cut(s)	975
XapI	RAATTY	3 cut(s)	209, 311, 737
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	549
Zsp2I	ATGCAT	1 cut(s)	909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.