Rh7CG116700
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0008917
Physical Location & Seq
Reverse (-)
8975847 .. 8976404
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG116700.1

Sequence Viewer

Length: 558 bp
ATGTATACATTTGATACACAGAAGACTTTTACGCCAAAGATTGATTATTTGAAATCAGTTGGGTTTTCGGAACTTGACATTGCAAGGGTTTTATCCAGTGAGCCTTGTATTCTCACAAGGAGCCTTAAAAATCAAATTGCTCCAGTGTTGAAACGCTTAGGCGAGTTCTTGGCAGTGATGATGATGTTGGGAAAGGTTGTAAAGAAATGCTATCGGGTACTTGAAAAATCTTTGGAGAAGGTGCTTGAGCCGAATATAGATATATTGAAGAGCCATGGTGTGCCTGAATCACTTATTTTGAAATTTTTTGTGGATCATCCACCAGCATTGCTTCTAAGTCCATATCAAGTTAGTGAGGGTATTGGTTTTGTTAAAAGTTTAGGTTTCAGTCCCAATAATCTGAAGTTTCTTCTAGCTCTGCATTCTGCGGCGGTGATGAGTAAGGCACTCTGGGAGCAGAAGTTGGAAACTTATAGGAGTTGTGGTATGTCAAAAGATGAGATTTATTCAGCATTCAAATTGCAAGTTTGCAACCCATGTGTATGCTTGTTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

185

Amino Acids

20.87

Weight (kDa)

8.98

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 5 - 173 1.5e-14 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 428, 431
AclWI GGATC 1 cut(s) 321
AcsI RAATTY 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 1 cut(s) 219
AgsI TTSAA 6 cut(s) 52, 151, 224, 268, 301, 517
AluBI AGCT 1 cut(s) 416
AluI AGCT 1 cut(s) 416
AlwI GGATC 1 cut(s) 321
ApoI RAATTY 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 445
BbsI GAAGAC 1 cut(s) 29
BfaI CTAG 1 cut(s) 413
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
BmiI GGNNCC 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 274
BsaXI ACNNNNNCTCC 4 cut(s) 446, 469, 476, 499
Bse1I ACTGG 2 cut(s) 96, 143
Bse3DI GCAATG 2 cut(s) 78, 326
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 1 cut(s) 316
BseMI GCAATG 2 cut(s) 78, 326
BseNI ACTGG 2 cut(s) 96, 143
BslFI GGGAC 1 cut(s) 375
BsmFI GGGAC 1 cut(s) 375
BsmI GAATGC 2 cut(s) 421, 512
Bsp143I GATC 1 cut(s) 313
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 2 cut(s) 428, 431
BspLI GGNNCC 1 cut(s) 122
BspPI GGATC 1 cut(s) 321
BspQI GCTCTTC 1 cut(s) 263
BsrDI GCAATG 2 cut(s) 78, 326
BsrI ACTGG 2 cut(s) 96, 143
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 1 cut(s) 313
BssNAI GTATAC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 274
Bst1107I GTATAC 1 cut(s) 6
Bst6I CTCTTC 1 cut(s) 263
BstDEI CTNAG 2 cut(s) 157, 335
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 1 cut(s) 316
BstMBI GATC 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 29
BstZ17I GTATAC 1 cut(s) 6
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 1 cut(s) 316
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 3 cut(s) 103, 150, 180
Csp6I GTAC 1 cut(s) 218
CspCI CAANNNNNGTGG 2 cut(s) 309, 344
CviAII CATG 2 cut(s) 275, 537
CviJI RGCY 5 cut(s) 103, 123, 250, 273, 416
CviKI_1 RGCY 5 cut(s) 103, 123, 250, 273, 416
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 2 cut(s) 157, 335
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 422
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 278, 540
FaiI YATR 9 cut(s) 6, 257, 263, 276, 343, 474, 488, 538, 544
FaqI GGGAC 1 cut(s) 375
FatI CATG 2 cut(s) 274, 536
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 429
FspBI CTAG 1 cut(s) 413
GluI GCNGC 1 cut(s) 429
GsuI CTGGAG 1 cut(s) 126
Hin1II CATG 2 cut(s) 278, 540
HinfI GANTC 1 cut(s) 287
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 70, 402
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 232
HpyCH4V TGCA 4 cut(s) 83, 421, 523, 531
HpyF3I CTNAG 2 cut(s) 157, 335
Hsp92II CATG 2 cut(s) 278, 540
Kzo9I GATC 1 cut(s) 313
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 3 cut(s) 120, 145, 454
LpnPI CCDG 5 cut(s) 109, 156, 297, 336, 436
MaeI CTAG 1 cut(s) 413
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 3 cut(s) 34, 280, 401
MluCI AATT 3 cut(s) 135, 302, 518
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 1 cut(s) 349
MseI TTAA 2 cut(s) 126, 372
MslI CAYNNNNRTG 1 cut(s) 541
Mva1269I GAATGC 2 cut(s) 421, 512
NcoI CCATGG 1 cut(s) 274
NdeII GATC 1 cut(s) 313
NlaIII CATG 2 cut(s) 278, 540
NlaIV GGNNCC 1 cut(s) 122
PciSI GCTCTTC 1 cut(s) 263
PctI GAATGC 2 cut(s) 421, 512
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 122
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 541
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 2 cut(s) 126, 372
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 1 cut(s) 313
SetI ASST 4 cut(s) 198, 243, 385, 418
SmiMI CAYNNNNRTG 1 cut(s) 541
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 3 cut(s) 135, 302, 518
SsiI CCGC 2 cut(s) 428, 431
SspMI CTAG 1 cut(s) 413
StyI CCWWGG 1 cut(s) 274
TasI AATT 3 cut(s) 135, 302, 518
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 2 cut(s) 126, 372
Tru9I TTAA 2 cut(s) 126, 372
TscAI CASTG 3 cut(s) 103, 150, 180
TspRI CASTG 3 cut(s) 103, 150, 180
XapI RAATTY 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.