Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008917

Physical Location & Seq

Genomic Coordinates Forward (+)

18005766 .. 18010077

Gene Structure 4312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G175800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAAAGCTCTGAAACCGCTTATGTTCTTTCGTTCACCTCCAAAATTCCAATGCCTTCCCTCTAACACAGCCAAACTTTCAATATCTCGTTTCTCTTCTCTATCTTCACCCATGAAAATCCCAAACCCAAATGGAAACTCTCACATAACAGATTACCTTATCAGTACCTTCAAATTTACCAAAACCCAAGCGTCCTCAATCTCGAATCGCTTCTCCTGGGTCACATCCCCTGAAAAGCCCCAATCCGTCCGTAGCTTTCTTCGAGAGCTTGGATTCTCCGATACCCATATCCGCTCTGCTGTGCGTGGCTCACCCCAAATCTTGTTTTCTAATATTGATAAGACCCTAAGGCCAAAGCTTGAGTTCTTTCAACAGTTAGGTCTTTCCAGTTCTGATCTCGCTAGTTTGATTTCCAAGAATTCCACGCTTTTGACTGTTAGTTTGGAAAGAAAATTAGTACCCTGTATTGAAATTCTCAAGAAAATCTTAGGGAATGATGAGAATGCCAAGGATTTGATTCGGGTTTTGTGTAGATGCAATTGGGTAGTGAGGAAAGATCCAGAATCGAGATTGTTGGGCAACATTGCCTTTATGGAGAGTTGTGGAATTGTTGGTTCTCAGCTTACCATGCTATTGAAGAGGCAGCCATGGCTTTTCATTGTGCAAGAATCTGTACTTAGAAGCCTTGTTTCACGGGTTCTGGAAATGGGTTTCTCATTGAATTCTAGGATGTTGGTTCATGCTCTCTACACAGTCAGTTGTTTGCGCAGTGGGACAATCAGCAGAAAACTGGACCTGCTTTGTATTTTTGGCTTTTCAGAGGATGAATGTATGGAAATGTTTAGAAGAACTCCAGGTTTGCTTAGGACATCAGAGGAGAAGTTAAAGTTAGGAATTGATTTCTTCTTGAACACGGTTAAGTTCAAAAAGTCAGTATTAATTCATACACCTTGGATTTTGATGTTTAGCATGGAGAACCGAGTGATTGCCCGATACAGGGTTTTAGAGGTTATAAAGTCAAAACGGCTATTGAAGAGGGATCCAACTTTTTATGGTGCACTTGTTTTGACAGAGGAGGAATTTTTGGATAAGTTTATATCAAGATTTAGAGATGACGCAGAGGTATTGTTAGTAGCTTACAAAGCTCATCTGCTGGATTCTACTCAGGAAGAAGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

394

Amino Acids

44.99

Weight (kDa)

9.66

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64950
fragaria_vesca	FvH4_5g07880
malus_domestica	MD02G1127600.v1.1
prunus_persica	Prupe.2G049400_v2.0.a1 Prupe.5G155900_v2.0.a1 Prupe.5G155900_v2.0.a1 Prupe.6G175800_v2.0.a1
pyrus_communis	pycom02g09970 pycom06g13440
rosa_chinensis	RchiOBHm_Chr7g0190571
rosa_laevigata	RLG00000004514
rosa_multiflora	Rmu_sc0029645.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264500
rosa_rugosa	Rorug06G0505400
rosa_samantha	Rh7AG111900 Rh7BG114700 Rh7CG116600 Rh7CG116700 Rh7CG116800 Rh7DG115800 Rh7DG115900
rosa_wichuraiana	Rw7G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1013
Acc16I	TGCGCA	1 cut(s)	767
Acc36I	ACCTGC	1 cut(s)	804
AccBSI	CCGCTC	1 cut(s)	294
AciI	CCGC	2 cut(s)	17, 292
AclWI	GGATC	3 cut(s)	551, 1034, 1047
AcsI	RAATTY	6 cut(s)	44, 173, 418, 471, 721, 1079
AfaI	GTAC	3 cut(s)	166, 459, 675
AfiI	CCNNNNNNNGG	2 cut(s)	996, 997
AgsI	TTSAA	9 cut(s)	81, 172, 371, 470, 637, 721, 910, 925, 1033
AjnI	CCWGG	2 cut(s)	215, 853
AluBI	AGCT	7 cut(s)	8, 255, 268, 358, 622, 1136, 1145
AluI	AGCT	7 cut(s)	8, 255, 268, 358, 622, 1136, 1145
Alw21I	GWGCWC	1 cut(s)	1060
Alw44I	GTGCAC	1 cut(s)	1056
AlwI	GGATC	3 cut(s)	551, 1034, 1047
AoxI	GGCC	1 cut(s)	350
ApaLI	GTGCAC	1 cut(s)	1056
ApeKI	GCWGC	1 cut(s)	643
ApoI	RAATTY	6 cut(s)	44, 173, 418, 471, 721, 1079
ArsI	GACNNNNNNTTYG	2 cut(s)	424, 456
AseI	ATTAAT	1 cut(s)	938
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	768
AspS9I	GGNCC	1 cut(s)	793
AsuHPI	GGTGA	3 cut(s)	27, 99, 303
AvaII	GGWCC	1 cut(s)	793
AxyI	CCTNAGG	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	1060
BamHI	GGATCC	1 cut(s)	1039
Bbv12I	GWGCWC	1 cut(s)	1060
BbvI	GCAGC	1 cut(s)	655
BceAI	ACGGC	1 cut(s)	1040
BciT130I	CCWGG	2 cut(s)	217, 855
BfaI	CTAG	2 cut(s)	402, 726
BfuAI	ACCTGC	1 cut(s)	804
BisI	GCNGC	1 cut(s)	644
BlsI	GCNGC	1 cut(s)	645
Bme1390I	CCNGG	2 cut(s)	217, 855
Bme18I	GGWCC	1 cut(s)	793
BmgT120I	GGNCC	1 cut(s)	793
BmiI	GGNNCC	1 cut(s)	1041
BmrFI	CCNGG	2 cut(s)	217, 855
BmsI	GCATC	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	837
Bpu10I	CCTNAGC	1 cut(s)	863
BpuEI	CTTGAG	2 cut(s)	380, 461
BsaJI	CCNNGG	4 cut(s)	216, 507, 647, 950
Bsc4I	CCNNNNNNNGG	2 cut(s)	996, 997
Bse1I	ACTGG	2 cut(s)	387, 795
Bse21I	CCTNAGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	2 cut(s)	217, 855
BseDI	CCNNGG	4 cut(s)	216, 507, 647, 950
BseGI	GGATG	3 cut(s)	224, 735, 829
BseLI	CCNNNNNNNGG	2 cut(s)	996, 997
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	2 cut(s)	632, 1178
BseNI	ACTGG	2 cut(s)	387, 795
BseRI	GAGGAG	2 cut(s)	890, 1088
BseSI	GKGCMC	1 cut(s)	1060
BseXI	GCAGC	1 cut(s)	655
BshFI	GGCC	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	1060
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	2 cut(s)	996, 997
BsmFI	GGGAC	1 cut(s)	787
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	1060
Bsp143I	GATC	3 cut(s)	394, 556, 1039
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	2 cut(s)	17, 292
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	2 cut(s)	631, 1177
BspLI	GGNNCC	1 cut(s)	1041
BspMI	ACCTGC	1 cut(s)	804
BspPI	GGATC	3 cut(s)	551, 1034, 1047
BsrBI	CCGCTC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	2 cut(s)	387, 795
BssECI	CCNNGG	4 cut(s)	216, 507, 647, 950
BssMI	GATC	3 cut(s)	394, 556, 1039
BssT1I	CCWWGG	3 cut(s)	507, 647, 950
Bst2UI	CCWGG	2 cut(s)	217, 855
Bst4CI	ACNGT	4 cut(s)	375, 436, 754, 916
Bst6I	CTCTTC	3 cut(s)	100, 632, 1028
BstDEI	CTNAG	7 cut(s)	347, 487, 618, 677, 863, 1164, 1179
BstDSI	CCRYGG	1 cut(s)	647
BstF5I	GGATG	3 cut(s)	224, 735, 829
BstHHI	GCGC	1 cut(s)	768
BstKTI	GATC	3 cut(s)	397, 559, 1042
BstMBI	GATC	3 cut(s)	394, 556, 1039
BstMWI	GCNNNNNNNGC	3 cut(s)	628, 649, 1142
BstNI	CCWGG	2 cut(s)	217, 855
BstSCI	CCNGG	2 cut(s)	215, 853
BstSLI	GKGCMC	1 cut(s)	1060
BstV1I	GCAGC	1 cut(s)	655
BstX2I	RGATCY	2 cut(s)	556, 1039
BstYI	RGATCY	2 cut(s)	556, 1039
Bsu36I	CCTNAGG	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	647
BtsCI	GGATG	3 cut(s)	224, 735, 829
BtsI	GCAGTG	1 cut(s)	775
BtsIMutI	CAGTG	1 cut(s)	775
BveI	ACCTGC	1 cut(s)	804
CfoI	GCGC	1 cut(s)	768
Cfr13I	GGNCC	1 cut(s)	793
CseI	GACGC	2 cut(s)	180, 1124
Csp6I	GTAC	3 cut(s)	165, 458, 674
CviAII	CATG	5 cut(s)	112, 628, 648, 740, 970
CviQI	GTAC	3 cut(s)	165, 458, 674
DdeI	CTNAG	7 cut(s)	347, 487, 618, 677, 863, 1164, 1179
DpnI	GATC	3 cut(s)	396, 558, 1041
DpnII	GATC	3 cut(s)	394, 556, 1039
Eam1104I	CTCTTC	3 cut(s)	100, 632, 1028
EarI	CTCTTC	3 cut(s)	100, 632, 1028
Eco130I	CCWWGG	3 cut(s)	507, 647, 950
Eco47I	GGWCC	1 cut(s)	793
Eco81I	CCTNAGG	1 cut(s)	347
EcoRI	GAATTC	2 cut(s)	418, 721
EcoRII	CCWGG	2 cut(s)	215, 853
EcoT14I	CCWWGG	3 cut(s)	507, 647, 950
ErhI	CCWWGG	3 cut(s)	507, 647, 950
FaeI	CATG	5 cut(s)	115, 631, 651, 743, 973
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	5 cut(s)	111, 627, 647, 739, 969
Fnu4HI	GCNGC	1 cut(s)	644
FokI	GGATG	3 cut(s)	211, 742, 836
Fsp4HI	GCNGC	1 cut(s)	644
FspBI	CTAG	2 cut(s)	402, 726
FspI	TGCGCA	1 cut(s)	767
GlaI	GCGC	1 cut(s)	767
GluI	GCNGC	1 cut(s)	644
GsuI	CTGGAG	1 cut(s)	837
HaeIII	GGCC	1 cut(s)	352
HgaI	GACGC	2 cut(s)	180, 1124
HhaI	GCGC	1 cut(s)	768
Hin1II	CATG	5 cut(s)	115, 631, 651, 743, 973
Hin6I	GCGC	1 cut(s)	766
HinP1I	GCGC	1 cut(s)	766
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	7 cut(s)	205, 273, 517, 563, 668, 1157, 1175
HphI	GGTGA	3 cut(s)	27, 99, 303
Hpy166II	GTNNAC	2 cut(s)	35, 1058
Hpy188I	TCNGA	5 cut(s)	12, 280, 394, 820, 874
Hpy188III	TCNNGA	9 cut(s)	202, 263, 478, 560, 567, 701, 907, 1101, 1166
Hpy8I	GTNNAC	2 cut(s)	35, 1058
HpyAV	CCTTC	2 cut(s)	65, 178
HpyCH4III	ACNGT	4 cut(s)	375, 436, 754, 916
HpyCH4V	TGCA	3 cut(s)	537, 664, 1058
HpyF10VI	GCNNNNNNNGC	3 cut(s)	628, 649, 1142
HpyF3I	CTNAG	7 cut(s)	347, 487, 618, 677, 863, 1164, 1179
Hsp92II	CATG	5 cut(s)	115, 631, 651, 743, 973
HspAI	GCGC	1 cut(s)	766
Kzo9I	GATC	3 cut(s)	394, 556, 1039
Lsp1109I	GCAGC	1 cut(s)	655
LweI	GCATC	1 cut(s)	524
MaeI	CTAG	2 cut(s)	402, 726
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	3 cut(s)	396, 558, 1041
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	3 cut(s)	394, 556, 1039
MboII	GAAGA	8 cut(s)	87, 96, 251, 649, 858, 895, 1045, 1181
MfeI	CAATTG	1 cut(s)	538
MflI	RGATCY	2 cut(s)	556, 1039
MhlI	GDGCHC	1 cut(s)	1060
MmeI	TCCRAC	1 cut(s)	1067
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	3 cut(s)	884, 918, 938
MspR9I	CCNGG	2 cut(s)	217, 855
MunI	CAATTG	1 cut(s)	538
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	2 cut(s)	217, 855
MwoI	GCNNNNNNNGC	3 cut(s)	628, 649, 1142
NcoI	CCATGG	1 cut(s)	647
NdeII	GATC	3 cut(s)	394, 556, 1039
NlaIII	CATG	5 cut(s)	115, 631, 651, 743, 973
NlaIV	GGNNCC	1 cut(s)	1041
NmuCI	GTSAC	1 cut(s)	220
NsbI	TGCGCA	1 cut(s)	767
PctI	GAATGC	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	7 cut(s)	205, 273, 517, 563, 668, 1157, 1175
PkrI	GCNGC	1 cut(s)	645
PshBI	ATTAAT	1 cut(s)	938
PsiI	TTATAA	1 cut(s)	1013
Psp6I	CCWGG	2 cut(s)	215, 853
PspGI	CCWGG	2 cut(s)	215, 853
PspN4I	GGNNCC	1 cut(s)	1041
PspPI	GGNCC	1 cut(s)	793
PsuI	RGATCY	2 cut(s)	556, 1039
RsaI	GTAC	3 cut(s)	166, 459, 675
RsaNI	GTAC	3 cut(s)	165, 458, 674
SaqAI	TTAA	3 cut(s)	884, 918, 938
SatI	GCNGC	1 cut(s)	644
Sau3AI	GATC	3 cut(s)	394, 556, 1039
Sau96I	GGNCC	1 cut(s)	793
ScrFI	CCNGG	2 cut(s)	217, 855
SduI	GDGCHC	1 cut(s)	1060
SfaNI	GCATC	1 cut(s)	524
SinI	GGWCC	1 cut(s)	793
SmlI	CTYRAG	2 cut(s)	359, 476
SmoI	CTYRAG	2 cut(s)	359, 476
SsiI	CCGC	2 cut(s)	17, 292
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	2 cut(s)	402, 726
StyD4I	CCNGG	2 cut(s)	215, 853
StyI	CCWWGG	3 cut(s)	507, 647, 950
TaaI	ACNGT	4 cut(s)	375, 436, 754, 916
TaqI	TCGA	3 cut(s)	203, 262, 566
TatI	WGTACW	1 cut(s)	673
TfiI	GAWTC	7 cut(s)	205, 273, 517, 563, 668, 1157, 1175
Tru1I	TTAA	3 cut(s)	884, 918, 938
Tru9I	TTAA	3 cut(s)	884, 918, 938
TscAI	CASTG	1 cut(s)	775
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	643
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	6 cut(s)	17, 128, 646, 728, 840, 932
TspGWI	ACGGA	2 cut(s)	235, 239
TspRI	CASTG	1 cut(s)	775
VneI	GTGCAC	1 cut(s)	1056
VpaK11BI	GGWCC	1 cut(s)	793
VspI	ATTAAT	1 cut(s)	938
XapI	RAATTY	6 cut(s)	44, 173, 418, 471, 721, 1079
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	2 cut(s)	402, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.