RchiOBHm_Chr7g0190571
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008917
Physical Location & Seq
Reverse (-)
9611557 .. 9612814
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17022

Sequence Viewer

Length: 684 bp
ATGTATACATTTGAAGCACAGAAGACTTTTAAGCCAAAGATTGATTATTTGAAATCAGTTGGGTTTTCGGAACTTGACATTGCAAGGGTTTTATCCAGTGAGCCTTATATTCTCACAAGGAGCCTTAAAAATAAAATTGCTCCAGTGTTGAAACGCTTAGGCGAGTTCTTGGCAGTGCTTGAGCCAAATATAGATATATTGAGGAGCCATGGTGTGCCTGAATCACTTATTTTGAAATTTTTTGTGGATCATCCACCAGCATTGCTTCTAAGTCCATATCAAGTTAGTGAGGGTATTGGTTTTGTTAAAAGTTTAGGTTTCAGTCCCAATAATCTGAAGTTTCTTCTAGCTCTGCATTCTGCGGCGGTGATGAGTAAGGCTCTCTGGGAGCAGAAGTTGGAAACTTATAGGAGTTGTGGTATGTCAAAAGATGAGATTTATTCAGCATTCAAATTGCAACCCATGTGTATGCTTGTTCCAGTGAAGAAGATTCATAAAATGATGAATTTCTTCCAGAGTAAAGGGAATTTGAATCCCTCAATTATTTCAAAGAATCCAAATCTTTTAAGGCTTAGCTTGGACCGCTTGGAGAAGAGTGTTATTCCCAGGTGTTCAGTTCTGCACCTTCTGTTGTCTCATGACTTGATAAGGAAAGATATTATGTTGTTTATGTGTTCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

227

Amino Acids

25.83

Weight (kDa)

9.59

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 61 - 207 5e-11 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AciI CCGC 3 cut(s) 362, 365, 583
AclWI GGATC 1 cut(s) 255
AcsI RAATTY 3 cut(s) 236, 505, 526
AcuI CTGAAG 1 cut(s) 356
AgsI TTSAA 8 cut(s) 14, 52, 151, 235, 451, 532, 549, 678
AjnI CCWGG 1 cut(s) 605
AluBI AGCT 2 cut(s) 350, 576
AluI AGCT 2 cut(s) 350, 576
Alw26I GTCTC 1 cut(s) 639
AlwI GGATC 1 cut(s) 255
ApoI RAATTY 3 cut(s) 236, 505, 526
Asp700I GAANNNNTTC 1 cut(s) 509
AspS9I GGNCC 1 cut(s) 580
AsuHPI GGTGA 1 cut(s) 379
AvaII GGWCC 1 cut(s) 580
BbsI GAAGAC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 607
BcoDI GTCTC 1 cut(s) 639
BfaI CTAG 1 cut(s) 347
BisI GCNGC 1 cut(s) 363
BlpI GCTNAGC 1 cut(s) 572
BlsI GCNGC 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 607
Bme18I GGWCC 1 cut(s) 580
BmgT120I GGNCC 1 cut(s) 580
BmiI GGNNCC 2 cut(s) 122, 206
BmrFI CCNGG 1 cut(s) 607
BpiI GAAGAC 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 364, 396
BpmI CTGGAG 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 157
Bpu1102I GCTNAGC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 208, 605
BsaXI ACNNNNNCTCC 6 cut(s) 196, 226, 380, 403, 410, 433
Bse1I ACTGG 3 cut(s) 96, 143, 479
Bse3DI GCAATG 2 cut(s) 78, 260
BseBI CCWGG 1 cut(s) 607
BseDI CCNNGG 2 cut(s) 208, 605
BseGI GGATG 1 cut(s) 250
BseMI GCAATG 2 cut(s) 78, 260
BseNI ACTGG 3 cut(s) 96, 143, 479
BseRI GAGGAG 1 cut(s) 217
BsgI GTGCAG 1 cut(s) 605
BslFI GGGAC 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 639
BsmFI GGGAC 1 cut(s) 309
BsmI GAATGC 2 cut(s) 355, 446
Bsp143I GATC 1 cut(s) 247
Bsp1720I GCTNAGC 1 cut(s) 572
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 3 cut(s) 362, 365, 583
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 122, 206
BspPI GGATC 1 cut(s) 255
BsrDI GCAATG 2 cut(s) 78, 260
BsrI ACTGG 3 cut(s) 96, 143, 479
BssECI CCNNGG 2 cut(s) 208, 605
BssMI GATC 1 cut(s) 247
BssNAI GTATAC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 208
Bst1107I GTATAC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 607
Bst6I CTCTTC 1 cut(s) 587
BstDEI CTNAG 3 cut(s) 157, 269, 572
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 250
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 639
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 582
BstNI CCWGG 1 cut(s) 607
BstSCI CCNGG 1 cut(s) 605
BstV2I GAAGAC 1 cut(s) 29
BstZ17I GTATAC 1 cut(s) 6
BtgI CCRYGG 1 cut(s) 208
BtsCI GGATG 1 cut(s) 250
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 4 cut(s) 103, 150, 180, 486
CciI TCATGA 1 cut(s) 637
Cfr13I GGNCC 1 cut(s) 580
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 3 cut(s) 209, 463, 638
CviJI RGCY 9 cut(s) 34, 103, 123, 184, 207, 350, 380, 571, 576
CviKI_1 RGCY 9 cut(s) 34, 103, 123, 184, 207, 350, 380, 571, 576
DdeI CTNAG 3 cut(s) 157, 269, 572
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
Eco130I CCWWGG 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 605
EcoT14I CCWWGG 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 3 cut(s) 212, 466, 641
FaqI GGGAC 1 cut(s) 309
FatI CATG 3 cut(s) 208, 462, 637
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 1 cut(s) 347
GluI GCNGC 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 126
Hin1II CATG 3 cut(s) 212, 466, 641
HinfI GANTC 4 cut(s) 221, 490, 532, 553
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 70, 336
Hpy188III TCNNGA 2 cut(s) 514, 638
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 635
HpyCH4V TGCA 4 cut(s) 83, 355, 457, 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 582
HpyF3I CTNAG 3 cut(s) 157, 269, 572
Hsp92II CATG 3 cut(s) 212, 466, 641
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 4 cut(s) 120, 145, 204, 388
LpnPI CCDG 9 cut(s) 109, 156, 231, 270, 370, 492, 527, 592, 619
MaeI CTAG 1 cut(s) 347
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 6 cut(s) 34, 335, 496, 499, 502, 604
MluCI AATT 6 cut(s) 135, 236, 452, 505, 526, 540
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 3 cut(s) 195, 283, 547
MroXI GAANNNNTTC 1 cut(s) 509
MseI TTAA 4 cut(s) 30, 126, 306, 566
MslI CAYNNNNRTG 1 cut(s) 467
MspR9I CCNGG 1 cut(s) 607
Mva1269I GAATGC 2 cut(s) 355, 446
MvaI CCWGG 1 cut(s) 607
MwoI GCNNNNNNNGC 1 cut(s) 582
NcoI CCATGG 1 cut(s) 208
NdeII GATC 1 cut(s) 247
NlaIII CATG 3 cut(s) 212, 466, 641
NlaIV GGNNCC 2 cut(s) 122, 206
PagI TCATGA 1 cut(s) 637
PctI GAATGC 2 cut(s) 355, 446
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 4 cut(s) 221, 490, 532, 553
PkrI GCNGC 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 605
PspGI CCWGG 1 cut(s) 605
PspN4I GGNNCC 2 cut(s) 122, 206
PspPI GGNCC 1 cut(s) 580
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 4 cut(s) 30, 126, 306, 566
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 580
ScrFI CCNGG 1 cut(s) 607
SetI ASST 5 cut(s) 319, 352, 578, 611, 627
SinI GGWCC 1 cut(s) 580
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 6 cut(s) 135, 236, 452, 505, 526, 540
SsiI CCGC 3 cut(s) 362, 365, 583
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 1 cut(s) 605
StyI CCWWGG 1 cut(s) 208
TasI AATT 6 cut(s) 135, 236, 452, 505, 526, 540
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 4 cut(s) 221, 490, 532, 553
Tru1I TTAA 4 cut(s) 30, 126, 306, 566
Tru9I TTAA 4 cut(s) 30, 126, 306, 566
TscAI CASTG 4 cut(s) 103, 150, 180, 486
TspDTI ATGAA 2 cut(s) 482, 518
TspRI CASTG 4 cut(s) 103, 150, 180, 486
VpaK11BI GGWCC 1 cut(s) 580
XapI RAATTY 3 cut(s) 236, 505, 526
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.