Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008917

Physical Location & Seq

Genomic Coordinates Reverse (-)

6905387 .. 6906574

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCAAATGCAAGCTTTGAAACCGCTTGTGTTCTTGCGCTCACCTCTATATTTCCAGTATCTTCCCTCTAATGCAGCCAAACTTTCCATCTCTCTTTTCTCATCTCTATCTTCACCCACCCAATTTCTAAAACCAAATGGAAACTCCCACCTCGCCGATTACCTTGTCAATACCTTCAAATTCACCAAAACCCAAGCCTTATCAATCTCAAGTCGATTCTCATGGGTCACATCCCCTGAAAAGCCTCAATCTGTATATAGCTTTCTTCGAGAACTTGGATTCTCTGACACCCATATCCGATCCGCTGTGCGTGTCTCACCCCAAATTTTGTTTTCTAATATTGACAAAACCCTGAGGCCTAAGCTTGACTTCTTTCAACAATTGGGTCTTTTGGGTTCTGATCTCGCTAGGTTCATTTCCAAAAATTCCACACTGTTGACTGCTAGTTTGGACAGAAAATTAGTACCCTGTACTGAAATTCTGAAGAAAATTTTGGGGAATGATGAGAATGCTAAAGATTTGATTCGGGTTTTACATAGATGTAATTGGGTGGTTACAAGGGACCCAAAATCAAGGTTGTTAGGAAATATTGCCTTTATGGAGAGTTGCGGAATTGTTGGTTCTCAGCTTTCCACGCTATTGAAGAGGCAGCCATGGCTTTTCATTGTTCAGGAATCTGTACTTAGAAGCCTTGTTGCACAGGTTGTGGAAATGGGTTTCTCATTGAATTCTGGGATGTTGGTTCATGGTTTATATACAGTTAGCTGTTTACGGAATGGGACAATTAGTAAAAAATTGGACTTGCTTTGTGGTTTTGGTTTCTCAAAGGATGAATGTATGGATATGTTTAGAAGAACGCCAGGTTTGTTTAGGACCTCAGAGGAGAAGTTAAAGTTTGGAATTGATTTTTTCTTGAATACAGTCAAGTTCAAAAAGTCGGTATTAATTCATACCCCTTGGATTTTGATGTATAGCATGGAGAACCGAGTGAGTGCTCGATACAGGATTTTAGAGGTTATAAAGTCAAAACGGTTATTGAAGAGAGATCCGAGTTTTTATGATGCACTTATTTTGCCGGAGAATGAATTTTTGGACAAGTTTATATCAAGATTTAGAGGTGATGCAGAGGAGTTGTTGGTTACTTACAAGGCTCGTCTCCTGGATTCTACTGACGAAGAAGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

396

Amino Acids

45.15

Weight (kDa)

9.58

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	87 - 172	1.5e-11	mTERF
mTERF	PF02536	197 - 363	6.5e-18	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64950
fragaria_vesca	FvH4_5g07880
malus_domestica	MD02G1127600.v1.1
prunus_persica	Prupe.2G049400_v2.0.a1 Prupe.5G155900_v2.0.a1 Prupe.5G155900_v2.0.a1 Prupe.6G175800_v2.0.a1
pyrus_communis	pycom02g09970 pycom06g13440
rosa_chinensis	RchiOBHm_Chr7g0190571
rosa_laevigata	RLG00000004514
rosa_multiflora	Rmu_sc0029645.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264500
rosa_rugosa	Rorug06G0505400
rosa_samantha	Rh7AG111900 Rh7BG114700 Rh7CG116600 Rh7CG116700 Rh7CG116800 Rh7DG115800 Rh7DG115900
rosa_wichuraiana	Rw7G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1019
AciI	CCGC	3 cut(s)	23, 303, 609
AclWI	GGATC	2 cut(s)	294, 1040
AcsI	RAATTY	7 cut(s)	179, 324, 424, 477, 489, 727, 1085
AcuI	CTGAAG	1 cut(s)	503
AfaI	GTAC	3 cut(s)	465, 472, 681
AgsI	TTSAA	8 cut(s)	19, 178, 377, 643, 727, 916, 931, 1039
AjnI	CCWGG	2 cut(s)	859, 1158
AjuI	GAANNNNNNNTTGG	4 cut(s)	476, 508, 1073, 1105
AluBI	AGCT	5 cut(s)	14, 261, 364, 628, 765
AluI	AGCT	5 cut(s)	14, 261, 364, 628, 765
Alw21I	GWGCWC	1 cut(s)	997
Alw26I	GTCTC	2 cut(s)	319, 1160
AlwI	GGATC	2 cut(s)	294, 1040
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	2 cut(s)	74, 649
ApoI	RAATTY	7 cut(s)	179, 324, 424, 477, 489, 727, 1085
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
AseI	ATTAAT	1 cut(s)	944
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	562, 873
AsuHPI	GGTGA	5 cut(s)	33, 105, 175, 309, 1130
AvaII	GGWCC	2 cut(s)	562, 873
AxyI	CCTNAGG	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	997
BbvI	GCAGC	2 cut(s)	86, 661
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	861, 1160
BcoDI	GTCTC	2 cut(s)	319, 1160
BfaI	CTAG	2 cut(s)	408, 444
BisI	GCNGC	2 cut(s)	75, 650
BlsI	GCNGC	2 cut(s)	76, 651
Bme1390I	CCNGG	2 cut(s)	861, 1160
Bme18I	GGWCC	2 cut(s)	562, 873
BmgT120I	GGNCC	2 cut(s)	562, 873
BmiI	GGNNCC	2 cut(s)	563, 564
BmrFI	CCNGG	2 cut(s)	861, 1160
BmsI	GCATC	2 cut(s)	1051, 1111
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	653, 956
Bse1I	ACTGG	1 cut(s)	55
Bse21I	CCTNAGG	1 cut(s)	353
BseBI	CCWGG	2 cut(s)	861, 1160
BseDI	CCNNGG	2 cut(s)	653, 956
BseGI	GGATG	3 cut(s)	230, 741, 835
BseMII	CTCAG	3 cut(s)	344, 638, 891
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	2 cut(s)	896, 1142
BseXI	GCAGC	2 cut(s)	86, 661
BshFI	GGCC	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	997
BsiSI	CCGG	1 cut(s)	1076
BslFI	GGGAC	2 cut(s)	575, 793
BsmAI	GTCTC	2 cut(s)	319, 1160
BsmBI	CGTCTC	1 cut(s)	1160
BsmFI	GGGAC	2 cut(s)	575, 793
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	358
Bsp1286I	GDGCHC	1 cut(s)	997
Bsp143I	GATC	3 cut(s)	299, 400, 1045
Bsp19I	CCATGG	1 cut(s)	653
BspACI	CCGC	3 cut(s)	23, 303, 609
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	3 cut(s)	345, 637, 890
BspLI	GGNNCC	2 cut(s)	563, 564
BspPI	GGATC	2 cut(s)	294, 1040
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	653, 956
BssMI	GATC	3 cut(s)	299, 400, 1045
BssT1I	CCWWGG	2 cut(s)	653, 956
Bst2UI	CCWGG	2 cut(s)	861, 1160
Bst4CI	ACNGT	4 cut(s)	435, 760, 922, 1032
Bst6I	CTCTTC	2 cut(s)	638, 1034
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	6 cut(s)	353, 360, 624, 683, 877, 1185
BstDSI	CCRYGG	1 cut(s)	653
BstF5I	GGATG	3 cut(s)	230, 741, 835
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	3 cut(s)	302, 403, 1048
BstMAI	GTCTC	2 cut(s)	319, 1160
BstMBI	GATC	3 cut(s)	299, 400, 1045
BstMWI	GCNNNNNNNGC	2 cut(s)	634, 655
BstNI	CCWGG	2 cut(s)	861, 1160
BstSCI	CCNGG	2 cut(s)	859, 1158
BstV1I	GCAGC	2 cut(s)	86, 661
BstX2I	RGATCY	1 cut(s)	1045
BstYI	RGATCY	1 cut(s)	1045
Bsu36I	CCTNAGG	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	358
BtgI	CCRYGG	1 cut(s)	653
BtsCI	GGATG	3 cut(s)	230, 741, 835
BtsIMutI	CAGTG	1 cut(s)	431
Cac8I	GCNNGC	1 cut(s)	12
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	562, 873
Csp6I	GTAC	3 cut(s)	464, 471, 680
CviAII	CATG	4 cut(s)	222, 654, 746, 976
CviQI	GTAC	3 cut(s)	464, 471, 680
DdeI	CTNAG	6 cut(s)	353, 360, 624, 683, 877, 1185
DpnI	GATC	3 cut(s)	301, 402, 1047
DpnII	GATC	3 cut(s)	299, 400, 1045
Eam1104I	CTCTTC	2 cut(s)	638, 1034
EarI	CTCTTC	2 cut(s)	638, 1034
Eco130I	CCWWGG	2 cut(s)	653, 956
Eco147I	AGGCCT	1 cut(s)	358
Eco47I	GGWCC	2 cut(s)	562, 873
Eco57I	CTGAAG	1 cut(s)	503
Eco81I	CCTNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	2 cut(s)	562, 873
EcoRI	GAATTC	1 cut(s)	727
EcoRII	CCWGG	2 cut(s)	859, 1158
EcoT14I	CCWWGG	2 cut(s)	653, 956
ErhI	CCWWGG	2 cut(s)	653, 956
Esp3I	CGTCTC	1 cut(s)	1160
FaeI	CATG	4 cut(s)	225, 657, 749, 979
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FaqI	GGGAC	2 cut(s)	575, 793
FatI	CATG	4 cut(s)	221, 653, 745, 975
Fnu4HI	GCNGC	2 cut(s)	75, 650
FokI	GGATG	3 cut(s)	217, 748, 842
Fsp4HI	GCNGC	2 cut(s)	75, 650
FspBI	CTAG	2 cut(s)	408, 444
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	2 cut(s)	75, 650
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	1 cut(s)	1076
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	225, 657, 749, 979
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HindIII	AAGCTT	2 cut(s)	12, 362
HinfI	GANTC	6 cut(s)	216, 279, 523, 674, 1163, 1181
HpaII	CCGG	1 cut(s)	1076
HphI	GGTGA	5 cut(s)	33, 105, 175, 309, 1130
Hpy166II	GTNNAC	2 cut(s)	438, 770
Hpy188I	TCNGA	6 cut(s)	286, 299, 400, 483, 880, 1050
Hpy188III	TCNNGA	4 cut(s)	269, 671, 913, 1107
Hpy8I	GTNNAC	2 cut(s)	438, 770
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	4 cut(s)	435, 760, 922, 1032
HpyCH4V	TGCA	6 cut(s)	4, 10, 74, 698, 1064, 1124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	634, 655
HpyF3I	CTNAG	6 cut(s)	353, 360, 624, 683, 877, 1185
Hsp92II	CATG	4 cut(s)	225, 657, 749, 979
HspAI	GCGC	1 cut(s)	37
KflI	GGGWCCC	1 cut(s)	562
Kzo9I	GATC	3 cut(s)	299, 400, 1045
Lsp1109I	GCAGC	2 cut(s)	86, 661
LweI	GCATC	2 cut(s)	1051, 1111
MaeI	CTAG	2 cut(s)	408, 444
MaeIII	GTNAC	3 cut(s)	226, 553, 1138
MalI	GATC	3 cut(s)	301, 402, 1047
MboI	GATC	3 cut(s)	299, 400, 1045
MboII	GAAGA	8 cut(s)	53, 102, 257, 496, 655, 864, 1051, 1187
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	1 cut(s)	1045
MhlI	GDGCHC	1 cut(s)	997
MseI	TTAA	2 cut(s)	890, 944
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	1 cut(s)	1076
MspR9I	CCNGG	2 cut(s)	861, 1160
MunI	CAATTG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	514
MvaI	CCWGG	2 cut(s)	861, 1160
MwoI	GCNNNNNNNGC	2 cut(s)	634, 655
NcoI	CCATGG	1 cut(s)	653
NdeII	GATC	3 cut(s)	299, 400, 1045
NlaIII	CATG	4 cut(s)	225, 657, 749, 979
NlaIV	GGNNCC	2 cut(s)	563, 564
NmuCI	GTSAC	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	358
PctI	GAATGC	1 cut(s)	514
PfeI	GAWTC	6 cut(s)	216, 279, 523, 674, 1163, 1181
PfoI	TCCNGGA	1 cut(s)	1158
PkrI	GCNGC	2 cut(s)	76, 651
PpuMI	RGGWCCY	2 cut(s)	562, 873
PshBI	ATTAAT	1 cut(s)	944
PsiI	TTATAA	1 cut(s)	1019
Psp5II	RGGWCCY	2 cut(s)	562, 873
Psp6I	CCWGG	2 cut(s)	859, 1158
PspGI	CCWGG	2 cut(s)	859, 1158
PspN4I	GGNNCC	2 cut(s)	563, 564
PspPI	GGNCC	2 cut(s)	562, 873
PspPPI	RGGWCCY	2 cut(s)	562, 873
PsuI	RGATCY	1 cut(s)	1045
RsaI	GTAC	3 cut(s)	465, 472, 681
RsaNI	GTAC	3 cut(s)	464, 471, 680
SaqAI	TTAA	2 cut(s)	890, 944
SatI	GCNGC	2 cut(s)	75, 650
Sau3AI	GATC	3 cut(s)	299, 400, 1045
Sau96I	GGNCC	2 cut(s)	562, 873
ScrFI	CCNGG	2 cut(s)	861, 1160
SduI	GDGCHC	1 cut(s)	997
SfaNI	GCATC	2 cut(s)	1051, 1111
SinI	GGWCC	2 cut(s)	562, 873
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	3 cut(s)	23, 303, 609
SspI	AATATT	2 cut(s)	340, 589
SspMI	CTAG	2 cut(s)	408, 444
StuI	AGGCCT	1 cut(s)	358
StyD4I	CCNGG	2 cut(s)	859, 1158
StyI	CCWWGG	2 cut(s)	653, 956
TaaI	ACNGT	4 cut(s)	435, 760, 922, 1032
TaqI	TCGA	3 cut(s)	214, 268, 997
TatI	WGTACW	2 cut(s)	470, 679
TfiI	GAWTC	6 cut(s)	216, 279, 523, 674, 1163, 1181
Tru1I	TTAA	2 cut(s)	890, 944
Tru9I	TTAA	2 cut(s)	890, 944
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	74, 649
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	6 cut(s)	403, 652, 734, 846, 938, 1098
TspGWI	ACGGA	1 cut(s)	787
TspRI	CASTG	1 cut(s)	438
VpaK11BI	GGWCC	2 cut(s)	562, 873
VspI	ATTAAT	1 cut(s)	944
XapI	RAATTY	7 cut(s)	179, 324, 424, 477, 489, 727, 1085
XspI	CTAG	2 cut(s)	408, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.