Rh7BG114700
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008917
Physical Location & Seq
Reverse (-)
8583058 .. 8585290
2233 bp
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UTR
Exon/CDS
Intron
Rh7BG114700.1

Sequence Viewer

Length: 303 bp
ATGAAGCTTCCTACATTGTATACATTTGATGCACAGAAGACTTTTAAGCCAAAGATGGATTATTTGAAATCAGTTGGGTTTTCGGAACTTGACATTGCAAGGGTTTTATCCAGTGAGCCTTATATTCTCACAAGGAGCCTTAAAAATCAAATTGCTCCGAGTGTTGAAACGCTTTGGCGAGTTCTTGGCAGTGATGATGATGTTGTGAAGGTTGTAAAGAAATGCTATCGGATACTTGAAAAATCTTTGGAGAAGGTGCTTGAGCCGAATATTATCTATATTGAGGAGCCATGGTGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

100

Amino Acids

11.58

Weight (kDa)

7.7

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 6 - 91 8.3e-11 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 20
AgsI TTSAA 3 cut(s) 67, 167, 239
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 44
BccI CCATC 1 cut(s) 49
BciVI GTATCC 1 cut(s) 225
BfuI GTATCC 1 cut(s) 225
BmiI GGNNCC 2 cut(s) 137, 288
BmsI GCATC 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 290
BsaXI ACNNNNNCTCC 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 290
BseMI GCAATG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 299
Bsp19I CCATGG 1 cut(s) 290
BspLI GGNNCC 2 cut(s) 137, 288
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 290
BssNAI GTATAC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 290
Bst1107I GTATAC 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 290
BstV2I GAAGAC 1 cut(s) 44
BstZ17I GTATAC 1 cut(s) 21
BsuI GTATCC 1 cut(s) 225
BtgI CCRYGG 1 cut(s) 290
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 118, 196
CviAII CATG 1 cut(s) 291
CviJI RGCY 6 cut(s) 7, 49, 118, 138, 265, 289
CviKI_1 RGCY 6 cut(s) 7, 49, 118, 138, 265, 289
Eco130I CCWWGG 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 1 cut(s) 294
FaiI YATR 4 cut(s) 21, 123, 279, 292
FatI CATG 1 cut(s) 290
FblI GTMKAC 1 cut(s) 20
Hin1II CATG 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 3 cut(s) 85, 159, 231
Hpy8I GTNNAC 1 cut(s) 21
HpyAV CCTTC 2 cut(s) 202, 247
HpyCH4V TGCA 2 cut(s) 32, 98
Hsp92II CATG 1 cut(s) 294
LmnI GCTCC 3 cut(s) 135, 160, 286
LpnPI CCDG 1 cut(s) 124
LweI GCATC 1 cut(s) 19
MboII GAAGA 1 cut(s) 49
MluCI AATT 1 cut(s) 150
MnlI CCTC 1 cut(s) 277
MseI TTAA 2 cut(s) 45, 141
NcoI CCATGG 1 cut(s) 290
NlaIII CATG 1 cut(s) 294
NlaIV GGNNCC 2 cut(s) 137, 288
PspN4I GGNNCC 2 cut(s) 137, 288
SaqAI TTAA 2 cut(s) 45, 141
SetI ASST 3 cut(s) 9, 213, 258
SfaNI GCATC 1 cut(s) 19
SgeI CNNG 9 cut(s) 101, 111, 123, 144, 171, 191, 197, 248, 272
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 1 cut(s) 150
SspI AATATT 1 cut(s) 271
StyI CCWWGG 1 cut(s) 290
TasI AATT 1 cut(s) 150
Tru1I TTAA 2 cut(s) 45, 141
Tru9I TTAA 2 cut(s) 45, 141
TscAI CASTG 2 cut(s) 118, 196
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 118, 196
XmiI GTMKAC 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.