Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008917

Physical Location & Seq

Genomic Coordinates Reverse (-)

9066284 .. 9067675

Gene Structure 1392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G009760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAACCTCCGCCATTGTCAGAGCCACTTGACCAAGACCAGAGAGGGAAAAGGCCGATGCTTGAAGCACATCCGCTTTTCAAATTTCAATCCAGGTAAACCCTCCACTCTCAACTATATACCCTTTTACTTGTTAATGCAAAATCCAAATGCTTTGTTTACTTGGCACAAAGCTAAAGCAGAGAGCTTTACCCACAATGGTTTACAGTCTTACCTCCAAAATTCATGTGGGCTGTCCTTAGAATCCGCCATTTCAGCTGCCCAGAAGCTTCAGATTGAATCCAAACACACCCCTGAATGGGTTCTGAGCCTATTCAGAACCCACGGATTGAATCAAACCCACATCAGGAACATAATATCTAAACTAACTCTTCCTACAATGTATACATTTGATACACAGAGGACTTTTAAGCCAAAGATTGATTATTTGAAATCAGTTGGGTTTTCGGAACTTGACATTGCAAGGGTTTTATCCAGTGAGCCTTATATTCTCACAAGGAGCCTTAAAAATCAAATTGCTCCAAGTGTTGAAACGCTTAGGCGAGTTCTTGGCTGTGATGATGATGTTGTGAAGGTTGTAAAGAAATGCTATCGGATACTTGAAAAATCTTTGGAGAAGGTGCTTGAGCCAAATATAGATATATTGAGGAGCCATGCATTGCTTCTAACTCCATATCAAGTTAGAGAGGGTATTGGTTTTGTTAAAAGTTTAGGTTTCAGTCCCAATAATCTGAAGCTTCTTCTAGCTCTGCATTCTGCGGCGGTGATGAGTAAGGCACTCTGGGAGCAGAAGTTGGAAACTTATAGGAGTTGTGGTATGTCAAAAGATGAGATTTATTCAGCATTCAAATTGCAACCCATGTGTATGCTTGTTCCAGTGAAGAAGATTCATAAAATGATGAATTTCTTCCAGAGTAAAGGGAATTTGAATTCCTCAATTATTTCAAAGAATCCAAATCTTTTAAGGCTTAGCTTGGAGAAGAGTGTTATTCCCAGGTGTTCAGAAAGATATTATGTTGTTTATGTGCTCAAAATGACTGAGGAGACTTTCAAGGAGAAGATAATGAGCAAGTTTAACGAAGTGGTTCCAGATGTTATTAAGGCACACAAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

371

Amino Acids

42.56

Weight (kDa)

9.7

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	102 - 217	3.1e-12	mTERF
mTERF	PF02536	227 - 337	3.4e-09	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64950
fragaria_vesca	FvH4_5g07880
malus_domestica	MD02G1127600.v1.1
prunus_persica	Prupe.2G049400_v2.0.a1 Prupe.5G155900_v2.0.a1 Prupe.5G155900_v2.0.a1 Prupe.6G175800_v2.0.a1
pyrus_communis	pycom02g09970 pycom06g13440
rosa_chinensis	RchiOBHm_Chr7g0190571
rosa_laevigata	RLG00000004514
rosa_multiflora	Rmu_sc0029645.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264500
rosa_rugosa	Rorug06G0505400
rosa_samantha	Rh7AG111900 Rh7BG114700 Rh7CG116600 Rh7CG116700 Rh7CG116800 Rh7DG115800 Rh7DG115900
rosa_wichuraiana	Rw7G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	383
AciI	CCGC	5 cut(s)	10, 73, 246, 758, 761
AcsI	RAATTY	5 cut(s)	82, 220, 901, 922, 928
AcuI	CTGAAG	2 cut(s)	254, 752
AfiI	CCNNNNNNNGG	3 cut(s)	297, 298, 345
AjnI	CCWGG	2 cut(s)	91, 992
AluBI	AGCT	7 cut(s)	173, 186, 257, 268, 736, 746, 972
AluI	AGCT	7 cut(s)	173, 186, 257, 268, 736, 746, 972
Alw21I	GWGCWC	1 cut(s)	1029
Alw26I	GTCTC	1 cut(s)	1037
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	5 cut(s)	82, 220, 901, 922, 928
Asp700I	GAANNNNTTC	3 cut(s)	300, 905, 1083
AsuHPI	GGTGA	1 cut(s)	775
Bbv12I	GWGCWC	1 cut(s)	1029
BbvI	GCAGC	1 cut(s)	244
BciT130I	CCWGG	2 cut(s)	93, 994
BciVI	GTATCC	1 cut(s)	588
BcoDI	GTCTC	1 cut(s)	1037
BfaI	CTAG	2 cut(s)	743, 1114
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	2 cut(s)	258, 759
BlpI	GCTNAGC	1 cut(s)	968
BlsI	GCNGC	2 cut(s)	259, 760
Bme1390I	CCNGG	2 cut(s)	93, 994
BmiI	GGNNCC	3 cut(s)	500, 650, 1086
BmrFI	CCNGG	2 cut(s)	93, 994
BmsI	GCATC	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	536
Bpu1102I	GCTNAGC	1 cut(s)	968
BpuEI	CTTGAG	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	322, 992
BsaXI	ACNNNNNCTCC	4 cut(s)	776, 799, 806, 829
Bsc4I	CCNNNNNNNGG	3 cut(s)	297, 298, 345
Bse1I	ACTGG	2 cut(s)	474, 875
Bse3DI	GCAATG	2 cut(s)	456, 656
BseBI	CCWGG	2 cut(s)	93, 994
BseDI	CCNNGG	2 cut(s)	322, 992
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	3 cut(s)	297, 298, 345
BseMI	GCAATG	2 cut(s)	456, 656
BseMII	CTCAG	2 cut(s)	296, 1029
BseNI	ACTGG	2 cut(s)	474, 875
BseRI	GAGGAG	2 cut(s)	661, 1055
BseXI	GCAGC	1 cut(s)	244
BshFI	GGCC	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	1029
BslFI	GGGAC	1 cut(s)	705
BslI	CCNNNNNNNGG	3 cut(s)	297, 298, 345
BsmAI	GTCTC	1 cut(s)	1037
BsmFI	GGGAC	1 cut(s)	705
BsmI	GAATGC	2 cut(s)	751, 842
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	1029
Bsp1720I	GCTNAGC	1 cut(s)	968
BspACI	CCGC	5 cut(s)	10, 73, 246, 758, 761
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	2 cut(s)	297, 1030
BspLI	GGNNCC	3 cut(s)	500, 650, 1086
BsrDI	GCAATG	2 cut(s)	456, 656
BsrI	ACTGG	2 cut(s)	474, 875
BssECI	CCNNGG	2 cut(s)	322, 992
BssNAI	GTATAC	1 cut(s)	384
Bst1107I	GTATAC	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	93, 994
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	2 cut(s)	375, 974
BstDEI	CTNAG	5 cut(s)	238, 305, 536, 968, 1038
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	1037
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	93, 994
BstSCI	CCNGG	2 cut(s)	91, 992
BstV1I	GCAGC	1 cut(s)	244
BstZ17I	GTATAC	1 cut(s)	384
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	481, 882
CviAII	CATG	3 cut(s)	225, 653, 859
DdeI	CTNAG	5 cut(s)	238, 305, 536, 968, 1038
Eam1104I	CTCTTC	2 cut(s)	375, 974
EarI	CTCTTC	2 cut(s)	375, 974
EciI	GGCGGA	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	254, 752
EcoRI	GAATTC	1 cut(s)	928
EcoRII	CCWGG	2 cut(s)	91, 992
EcoT22I	ATGCAT	1 cut(s)	658
FaeI	CATG	3 cut(s)	228, 656, 862
FaqI	GGGAC	1 cut(s)	705
FatI	CATG	3 cut(s)	224, 652, 858
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	2 cut(s)	258, 759
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	2 cut(s)	258, 759
FspBI	CTAG	2 cut(s)	743, 1114
GluI	GCNGC	2 cut(s)	258, 759
HaeIII	GGCC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	228, 656, 862
HindIII	AAGCTT	2 cut(s)	266, 734
HinfI	GANTC	5 cut(s)	242, 278, 331, 886, 949
HphI	GGTGA	1 cut(s)	775
Hpy166II	GTNNAC	4 cut(s)	98, 159, 203, 384
Hpy188I	TCNGA	8 cut(s)	21, 273, 306, 317, 448, 594, 732, 1003
Hpy188III	TCNNGA	3 cut(s)	346, 910, 1088
Hpy8I	GTNNAC	4 cut(s)	98, 159, 203, 384
HpyAV	CCTTC	2 cut(s)	565, 610
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4V	TGCA	5 cut(s)	139, 461, 656, 751, 853
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	5 cut(s)	238, 305, 536, 968, 1038
Hsp92II	CATG	3 cut(s)	228, 656, 862
LmnI	GCTCC	4 cut(s)	498, 523, 648, 784
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	2 cut(s)	743, 1114
MboII	GAAGA	7 cut(s)	362, 731, 892, 895, 898, 991, 1069
MhlI	GDGCHC	1 cut(s)	1029
MluCI	AATT	8 cut(s)	82, 220, 513, 848, 901, 922, 928, 936
MmeI	TCCRAC	1 cut(s)	774
MnlI	CCTC	9 cut(s)	17, 37, 112, 224, 393, 639, 679, 943, 1033
Mph1103I	ATGCAT	1 cut(s)	658
MroXI	GAANNNNTTC	3 cut(s)	300, 905, 1083
MseI	TTAA	7 cut(s)	134, 408, 504, 702, 962, 1074, 1098
MslI	CAYNNNNRTG	1 cut(s)	863
MspA1I	CMGCKG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	93, 994
Mva1269I	GAATGC	2 cut(s)	751, 842
MvaI	CCWGG	2 cut(s)	93, 994
MwoI	GCNNNNNNNGC	1 cut(s)	254
NlaIII	CATG	3 cut(s)	228, 656, 862
NlaIV	GGNNCC	3 cut(s)	500, 650, 1086
NsiI	ATGCAT	1 cut(s)	658
PctI	GAATGC	2 cut(s)	751, 842
PdmI	GAANNNNTTC	3 cut(s)	300, 905, 1083
PfeI	GAWTC	5 cut(s)	242, 278, 331, 886, 949
PkrI	GCNGC	2 cut(s)	259, 760
Psp6I	CCWGG	2 cut(s)	91, 992
PspGI	CCWGG	2 cut(s)	91, 992
PspN4I	GGNNCC	3 cut(s)	500, 650, 1086
PvuII	CAGCTG	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	863
SaqAI	TTAA	7 cut(s)	134, 408, 504, 702, 962, 1074, 1098
SatI	GCNGC	2 cut(s)	258, 759
ScrFI	CCNGG	2 cut(s)	93, 994
SduI	GDGCHC	1 cut(s)	1029
SfaNI	GCATC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	863
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	8 cut(s)	82, 220, 513, 848, 901, 922, 928, 936
SsiI	CCGC	5 cut(s)	10, 73, 246, 758, 761
SspMI	CTAG	2 cut(s)	743, 1114
StyD4I	CCNGG	2 cut(s)	91, 992
TaaI	ACNGT	1 cut(s)	207
TasI	AATT	8 cut(s)	82, 220, 513, 848, 901, 922, 928, 936
TauI	GCSGC	1 cut(s)	761
TfiI	GAWTC	5 cut(s)	242, 278, 331, 886, 949
Tru1I	TTAA	7 cut(s)	134, 408, 504, 702, 962, 1074, 1098
Tru9I	TTAA	7 cut(s)	134, 408, 504, 702, 962, 1074, 1098
TscAI	CASTG	2 cut(s)	481, 882
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	4 cut(s)	17, 213, 878, 914
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	2 cut(s)	481, 882
XapI	RAATTY	5 cut(s)	82, 220, 901, 922, 928
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	383
XmnI	GAANNNNTTC	3 cut(s)	300, 905, 1083
XspI	CTAG	2 cut(s)	743, 1114
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.