Rh7AG111900
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0008917
Physical Location & Seq
Reverse (-)
8768528 .. 8769135
608 bp
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UTR
Exon/CDS
Intron
Rh7AG111900.1

Sequence Viewer

Length: 504 bp
ATGCCTACATGTTCTCCCAAACCCTCGAATTCCTCGGACCCACAATGGTTTACAGTCTCTTACCTTCAAAATTCATGTGGGCTGTCCTTAGAATCCGCCATTTCAGCTGCCCAGAAGCTTCAGATTGAATCCAAACACACCCCTGACTCGGCCCAATTTGGAGTTGCTCAAGTGGTTCTTAAAGACCCAATTGTGCTTGAGAGTGATGCAAAATCTGTGCTTGAGTTTTTTAGAAATCATGGTTTTAGTGAAAAGGATATAGTAACTCTTCCTACAATGTATACATTTGATGCACAGAGGACTTTTAAGCCAAAGATGGATTATTTGAAATCAGTTGGGTTTTTGGAACTTGACATTGCAAGGGTTTTATCCAGTGAGCCTTATATTCTCACAAGGAGCCATAAAAATCAAATTGCTCCGAGTGTTGAAACGCTTAGGCGAGTTCTTGGCAATGATGATGATGTTGTGAAGGTTGTAAAGAAATGCTATCGGATCCATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

167

Amino Acids

18.75

Weight (kDa)

7.71

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 97 - 162 5e-07 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 281
AciI CCGC 1 cut(s) 96
AclWI GGATC 2 cut(s) 487, 500
AcsI RAATTY 2 cut(s) 28, 70
AcuI CTGAAG 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 148
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 4 cut(s) 68, 128, 328, 428
AluBI AGCT 2 cut(s) 107, 118
AluI AGCT 2 cut(s) 107, 118
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 2 cut(s) 487, 500
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 2 cut(s) 28, 70
AspS9I GGNCC 2 cut(s) 37, 151
AvaII GGWCC 1 cut(s) 37
BamHI GGATCC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 61
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 151
BmiI GGNNCC 3 cut(s) 39, 398, 494
BmsI GCATC 2 cut(s) 196, 280
Bpu10I CCTNAGC 1 cut(s) 434
BpuEI CTTGAG 3 cut(s) 153, 218, 242
BsaJI CCNNGG 1 cut(s) 33
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 372
Bse3DI GCAATG 2 cut(s) 354, 457
BseDI CCNNGG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 2 cut(s) 354, 457
BseNI ACTGG 1 cut(s) 372
BseXI GCAGC 1 cut(s) 94
BshFI GGCC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 492
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 152
BspLI GGNNCC 3 cut(s) 39, 398, 494
BspPI GGATC 2 cut(s) 487, 500
BsrDI GCAATG 2 cut(s) 354, 457
BsrI ACTGG 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 492
BssNAI GTATAC 1 cut(s) 282
Bst1107I GTATAC 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 88, 434
BstKTI GATC 1 cut(s) 495
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 1 cut(s) 492
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BstZ17I GTATAC 1 cut(s) 282
BsuRI GGCC 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 37, 151
CviAII CATG 3 cut(s) 9, 75, 239
CviJI RGCY 7 cut(s) 82, 107, 118, 152, 310, 379, 399
CviKI_1 RGCY 7 cut(s) 82, 107, 118, 152, 310, 379, 399
DdeI CTNAG 2 cut(s) 88, 434
DpnI GATC 1 cut(s) 494
DpnII GATC 1 cut(s) 492
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
EciI GGCGGA 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 28
FaeI CATG 3 cut(s) 12, 78, 242
FaiI YATR 8 cut(s) 10, 76, 240, 260, 282, 384, 402, 498
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FatI CATG 3 cut(s) 8, 74, 238
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 1 cut(s) 152
Hin1II CATG 3 cut(s) 12, 78, 242
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 3 cut(s) 92, 128, 146
Hpy166II GTNNAC 2 cut(s) 51, 282
Hpy188I TCNGA 4 cut(s) 37, 123, 420, 492
Hpy8I GTNNAC 2 cut(s) 51, 282
HpyAV CCTTC 2 cut(s) 74, 463
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 3 cut(s) 209, 293, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 88, 434
Hsp92II CATG 3 cut(s) 12, 78, 242
Kzo9I GATC 1 cut(s) 492
LmnI GCTCC 2 cut(s) 396, 421
LpnPI CCDG 3 cut(s) 125, 156, 385
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 2 cut(s) 196, 280
MaeIII GTNAC 1 cut(s) 262
MalI GATC 1 cut(s) 494
MboI GATC 1 cut(s) 492
MboII GAAGA 1 cut(s) 260
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 1 cut(s) 492
MluCI AATT 5 cut(s) 28, 70, 155, 189, 411
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 3 cut(s) 34, 43, 291
MseI TTAA 2 cut(s) 180, 306
MspA1I CMGCKG 1 cut(s) 107
MunI CAATTG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 1 cut(s) 492
NlaIII CATG 3 cut(s) 12, 78, 242
NlaIV GGNNCC 3 cut(s) 39, 398, 494
NmeAIII GCCGAG 1 cut(s) 128
NspI RCATGY 1 cut(s) 12
PciI ACATGT 1 cut(s) 8
PfeI GAWTC 2 cut(s) 92, 128
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PscI ACATGT 1 cut(s) 8
PspN4I GGNNCC 3 cut(s) 39, 398, 494
PspPI GGNCC 2 cut(s) 37, 151
PsuI RGATCY 1 cut(s) 492
PvuII CAGCTG 1 cut(s) 107
SaqAI TTAA 2 cut(s) 180, 306
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 492
Sau96I GGNCC 2 cut(s) 37, 151
SchI GAGTC 1 cut(s) 140
SetI ASST 4 cut(s) 66, 109, 120, 474
SfaNI GCATC 2 cut(s) 196, 280
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 3 cut(s) 168, 197, 221
SmoI CTYRAG 3 cut(s) 168, 197, 221
Sse9I AATT 5 cut(s) 28, 70, 155, 189, 411
SsiI CCGC 1 cut(s) 96
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 26
TasI AATT 5 cut(s) 28, 70, 155, 189, 411
TfiI GAWTC 2 cut(s) 92, 128
Tru1I TTAA 2 cut(s) 180, 306
Tru9I TTAA 2 cut(s) 180, 306
TscAI CASTG 1 cut(s) 379
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 63
TspRI CASTG 1 cut(s) 379
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 2 cut(s) 28, 70
XceI RCATGY 1 cut(s) 12
XmiI GTMKAC 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.